Development and application of high-throughput amplified fragment length polymorphism technique in Calluna vulgaris (Ericaceae)

Electronic Journal of Biotechnology

Volumn 13, Issue 2, 2010, Pages 1-5

  Borchert, Thomas ^a   Gawenda, Inka ^b  

^a LEIBNIZ INSTITUTE OF VEGETABLE AND ORNAMENTAL CROPS   (Germany)

^b UNIVERSITY OF HOHENHEIM   (Germany)

Author keywords

DNA content; Mapping; Marker assisted selection; Ornamental; Plant tissue

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISMS; BANDING PATTERNS; CALLUNA; DNA CONTENT; DNA EXTRACTION; ERICACEAE; GENETIC APPLICATIONS; HIGH THROUGHPUT; HORTICULTURAL INDUSTRY; MARKER-ASSISTED SELECTION; MODIFIED DNA; MOLECULAR MARKER; MOLECULAR TECHNIQUES; ORNAMENTAL CROPS; ORNAMENTAL PLANTS; REACTION CONDITIONS; VULGARIS; WOODY CROP; WOODY SPECIES;

COST REDUCTION; CROPS; GENES; MAPPING; POLYMORPHISM; VISUALIZATION;

DNA;

GENOMIC DNA;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; CALLUNA VULGARIS; CROP; DNA EXTRACTION; DNA ISOLATION; HIGH THROUGHPUT SCREENING; METHODOLOGY; NONHUMAN; PLANT GROWTH; POLYACRYLAMIDE GEL ELECTROPHORESIS;

CALLUNA VULGARIS; ERICACEAE;

EID: 77954053963     PISSN: None     EISSN: 07173458     Source Type: Journal    
DOI: 10.2225/vol13-issue2-fulltext-2     Document Type: Article

References (15)

1. Albert, T.; Raspe, O. and Jacquemart, A.L. Clonal structure in Vaccinium myrtillus L. revealed by RAPD and AFLP markers. International Journal of Plant Sciences, 2003, vol. 164, no. 4, p. 649-655.
2. Bagley, Mark J.; Anderson, Susan L. and May, Bernie. Choice of methodology for assessing genetic impacts of environmental stressors: polymorphisms and reproducibility of RAPD and AFLP fingerprints. Ecotoxicology, August 2001, vol. 10, no. 4, p. 239-244.
3. Borchert, Thomas; Krüger, Joerg and Hohe, Annette. Implementation of a model for identifying Essentially Derived Varieties in vegetatively propagated Calluna vulgaris varieties. BMC Genetics, 2008, vol. 9, p. 56.
4. Borchert, T.; Eckardt, K.; Fuchs, J.; Krüger, K. and Hohe, A. Who's who' in two different flower types of Calluna vulgaris (Ericaceae): morphological and molecular analyses of flower organ identity. BMC Plant Biology, December 2009, vol. 9, p. 148.
5. Chen, D.H. and Ronald, P.C. A rapid DNA minipreparation method suitable for AFLP and other PCR applications. Plant Molecular Biology Reporter, March 1999, vol. 17, no. 1, p. 53-57.
6. De Riek, J.; Dendauw, J.; Mertens, M.; De Loose, M.; Heursel, J. and Van Bockstaele, E. Validation of criteria for the selection of AFLP markers to assess the genetic variation of a breeders' collection of evergreen azaleas. Theoretical and Applied Genetics, November 1999, vol. 99, no. 7-8, p. 1155-1165.
7. Dhanaraj, Anik L.; Slovin, Janit P. and Rowland, Lisa J. Analysis of gene expression associated with cold acclimatisation in blueberry floral buds using expressed sequence tags. Plant Science, April 2004, vol. 166, no. 4, p. 863-872.
8. Fay, Michael F.; Cowan, Robyn S. and Leitch, Ilia J. The effects of nuclear DNA content (C-value) on the quality and utility of AFLP fingerprints. Annals of Botany, January 2005, vol. 95, no. 1, p. 237-246.
9. Gawenda, I. and Debener, T. Genetic diversity of Osteospermum genotypes analysed by AFLP and Chloroplast SSR Markers. European Journal of Horticultural Science, 2009, vol. 74, no. 2, p. 86-94.
10. Graham, J.; Smith, K.; Mackenzie, K.; Jorgenson, L.; Hackett, C. and Powell, W. The construction of a genetic linkage map of red raspberry (Rubus idaeus subsp idaeus) based on AFLPs, genomic-SSR and EST-SSR markers. Theoretical and Applied Genetics, August 2004, vol. 109, no. 4, p. 740-749.
11. Meudt, Heidi M. and Clarke, Andrew C. Almost forgotten or latest practice? AFLP applications analyses and advances. Trends in Plant Science, March 2007, vol. 12, no. 3, p. 106-117.
12. Myburg, A.A.; Remington, D.L.; O'Malley, D.M.; Sederoff, R.R. and Whetten, R.W. High- throughput AFLP analysis using infrared dye-labeled primers and an automated DNA sequencer. BioTechniques, February 2001, vol. 30, p. 348-357.
13. Pooler, Margaret R.; Dix, Ruth L. and Griesbach, Robert J. Genetic diversity among accessions of the endangered box huckleberry (Gaylussacia brachycera) based on AFLP markers. Journal of the Torrey Botanical Society, 2006, vol. 133, no. 3, p. 439-448.
14. Rogstad, S.H. Plant DNA extraction using silica. Plant Molecular Biology Reporter, December 2003, vol. 21, no. 4, p. 463.
15. Vos, Pieter; Hogers, Rene; Bleeker, Marjo; Reijans, Martins; Van De Lee, Theo; Hornes, Miranda; Friters, Adrie; Pot, Jerina; Paleman, Johan; Kuiper, Martin and Zabeau, Marc. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research, 1995, vol. 23, no. 21, p. 4407-4414.