-
2
-
-
0036307754
-
The geometry of domain combination in proteins
-
DOI 10.1006/jmbi.2001.5288
-
Bashton M, Chothia C. 2002 The geometry of domain combination in proteins. J. Mol. Biol. 315, 927-939. (doi:10.1006/jmbi.2001.5288). (Pubitemid 34729337)
-
(2002)
Journal of Molecular Biology
, vol.315
, Issue.4
, pp. 927-939
-
-
Bashton, M.1
Chothia, C.2
-
3
-
-
13144259695
-
Relative rates of gene fusion and fission in multi-domain proteins
-
DOI 10.1016/j.tig.2004.11.007, PII S0168952504003099
-
Kummerfeld SK, Teichmann SA. 2005 Relative rates of gene fusion and fission in multi-domain proteins. Trends Genet. 21, 25-30. (doi:10.1016/j.tig. 2004. 11.007). (Pubitemid 40178845)
-
(2005)
Trends in Genetics
, vol.21
, Issue.1
, pp. 25-30
-
-
Kummerfeld, S.K.1
Teichmann, S.A.2
-
4
-
-
17544367678
-
Convergent evolution of domain architectures (is rare)
-
DOI 10.1093/bioinformatics/bti204
-
Gough J. 2005 Convergent evolution of domain architectures (is rare). Bioinformatics 21, 1464-1471. (doi:10.1093/bioinformatics/bti204). (Pubitemid 40552751)
-
(2005)
Bioinformatics
, vol.21
, Issue.8
, pp. 1464-1471
-
-
Gough, J.1
-
5
-
-
38949097787
-
Domain tree-based analysis of protein architecture evolution
-
DOI 10.1093/molbev/msm254
-
Forslund K, Henricson A, Hollich V, Sonnhammer EL. 2008 Domain tree-based analysis of protein architecture evolution. Mol. Biol. Evol. 25, 254-264. (doi:10.1093/molbev/msm254). (Pubitemid 351231600)
-
(2008)
Molecular Biology and Evolution
, vol.25
, Issue.2
, pp. 254-264
-
-
Forslund, K.1
Henricson, A.2
Hollich, V.3
Sonnhammer, E.L.L.4
-
6
-
-
26844454995
-
Domain rearrangements in protein evolution
-
DOI 10.1016/j.jmb.2005.08.067, PII S0022283605010478
-
Bjorklund AK, Ekman D, Light S, Frey-Skött J, Elofsson A. 2005 Domain rearrangements in protein evolution. J. Mol. Biol. 353, 911-923. (doi:10. 1016/j.jmb.2005.08.067). (Pubitemid 41457391)
-
(2005)
Journal of Molecular Biology
, vol.353
, Issue.4
, pp. 911-923
-
-
Bjorklund, A.K.1
Ekman, D.2
Light, S.3
Frey-Skott, J.4
Elofsson, A.5
-
7
-
-
33646268799
-
Domain deletions and substitutions in the modular protein evolution
-
doi:10. 1111/j.1742-4658.2006.05220.x
-
Weiner 3rd J, Beaussart F, Bornberg-Bauer E. 2006 Domain deletions and substitutions in the modular protein evolution. FEBS J. 273, 2037-2047. (doi:10. 1111/j.1742-4658.2006.05220.x).
-
(2006)
FEBS J.
, vol.273
, pp. 2037-2047
-
-
Weiner, J.1
Beaussart, F.2
Bornberg-Bauer, E.3
-
8
-
-
67650497792
-
Nature of the protein universe
-
doi:10. 1073/pnas.0905029106
-
Levitt M. 2009 Nature of the protein universe. Proc. Natl Acad. Sci. USA 106, 11 079-11 084. (doi:10. 1073/pnas.0905029106).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 11079-11084
-
-
Levitt, M.1
-
9
-
-
40449095056
-
Evolution of protein domain promiscuity in eukaryotes
-
DOI 10.1101/gr.6943508
-
Basu MK, Carmel L, Rogozin IB, Koonin EV. 2008 Evolution of protein domain promiscuity in eukaryotes. Genome Res. 18, 449-461. (doi:10.1101/gr. 6943508). (Pubitemid 351347088)
-
(2008)
Genome Research
, vol.18
, Issue.3
, pp. 449-461
-
-
Basu, M.K.1
Carmel, L.2
Rogozin, I.B.3
Koonin, E.V.4
-
10
-
-
84858077472
-
The pfam protein families database
-
doi:10.1093/nar/gkr1065
-
Punta M et al. 2011 The Pfam protein families database. Nucleic Acids Res. 40, D290-D301. (doi:10.1093/nar/gkr1065).
-
(2011)
Nucleic Acids Res.
, vol.40
-
-
Punta, M.1
-
11
-
-
84858602406
-
Interpro in 2011: New developments in the family and domain prediction database
-
doi:10.1093/nar/gkr948
-
Hunter S et al. 2012 InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. 40, D306-D312. (doi:10.1093/nar/gkr948).
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Hunter, S.1
-
12
-
-
33748052051
-
Expansion of protein domain repeats
-
DOI 10.1371/journal.pcbi.0020114
-
Björklund AK, Ekman D, Elofsson A. 2006 Expansion of protein domain repeats. PLoS Comput. Biol. 2, e114. (doi:10.1371/journal.pcbi.0020114). (Pubitemid 44298484)
-
(2006)
PLoS Computational Biology
, vol.2
, Issue.8
, pp. 0959-0970
-
-
Bjorklund, A.K.1
Ekman, D.2
Elofsson, A.3
-
13
-
-
34548487255
-
Quantification of the Elevated Rate of Domain Rearrangements in Metazoa
-
DOI 10.1016/j.jmb.2007.06.022, PII S0022283607008170
-
Ekman D, Björklund AK, Elofsson A. 2007 Quantification of the elevated rate of domain rearrangements in Metazoa. J. Mol. Biol. 372, 1337-1348. (doi:10.1016/j.jmb.2007.06.022). (Pubitemid 47374714)
-
(2007)
Journal of Molecular Biology
, vol.372
, Issue.5
, pp. 1337-1348
-
-
Ekman, D.1
Bjorklund, A.K.2
Elofsson, A.3
-
14
-
-
16444381885
-
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
-
doi:10. 1186/gb-2004-5-2-r7
-
Koonin EV et al. 2004 A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes. Genome Biol. 5, R7. (doi:10. 1186/gb-2004-5-2-r7).
-
(2004)
Genome Biol.
, vol.5
-
-
Koonin, E.V.1
-
15
-
-
22244450719
-
Protein families and their evolution - A structural perspective
-
DOI 10.1146/annurev.biochem.74.082803.133029
-
Orengo CA, Thornton JM. 2005 Protein families and their evolution: A structural perspective. Annu. Rev. Biochem. 74, 867-900. (doi:10.1146/annurev. biochem.74.082803.133029). (Pubitemid 40995526)
-
(2005)
Annual Review of Biochemistry
, vol.74
, pp. 867-900
-
-
Orengo, C.A.1
Thornton, J.M.2
-
16
-
-
50849114838
-
Arrangements in the modular evolution of proteins
-
doi:10.1016/j.tibs.2008.05.008
-
Moore AD, Björklund AK, Ekman D, Bornberg-Bauer E, Elofsson A. 2008 Arrangements in the modular evolution of proteins. Trends Biochem. Sci. 33, 444-451. (doi:10.1016/j.tibs.2008.05.008).
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 444-451
-
-
Moore, A.D.1
Björklund, A.K.2
Ekman, D.3
Bornberg-Bauer, E.4
Elofsson, A.5
-
17
-
-
59849127275
-
The origin, evolution and structure of the protein world
-
doi:10.1042/BJ20082063
-
Caetano-Anolles G, Wang M, Caetano-Anolles D, Mittenthal JE. 2009 The origin, evolution and structure of the protein world. Biochem. J. 417, 621-637. (doi:10.1042/BJ20082063).
-
(2009)
Biochem. J.
, vol.417
, pp. 621-637
-
-
Caetano-Anolles, G.1
Wang, M.2
Caetano-Anolles, D.3
Mittenthal, J.E.4
-
18
-
-
84876528480
-
Dcgo: Database of domaincentric ontologies on functions, phenotypes, diseases and more
-
doi:10.1093/nar/gks1080
-
Fang H, Gough J. 2013 DcGO: database of domaincentric ontologies on functions, phenotypes, diseases and more. Nucleic Acids Res. 41, D536-D544. (doi:10.1093/nar/gks1080).
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Fang, H.1
Gough, J.2
|