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Volumn 8, Issue 7, 2013, Pages

A Network Integration Approach to Predict Conserved Regulators Related to Pathogenicity of Influenza and SARS-CoV Respiratory Viruses

(24)  Mitchell, Hugh D a   Eisfeld, Amie J b   Sims, Amy C c   McDermott, Jason E a   Matzke, Melissa M a   Webb Robertson, Bobbi Jo M a   Tilton, Susan C a   Tchitchek, Nicolas d   Josset, Laurence d   Li, Chengjun b   Ellis, Amy L b   Chang, Jean H d   Heegel, Robert A a   Luna, Maria L a   Schepmoes, Athena A a   Shukla, Anil K a   Metz, Thomas O a   Neumann, Gabriele b   Benecke, Arndt G d,e   Smith, Richard D a   more..


Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; DATA BASE; INFLUENZA; INFLUENZA VIRUS; LUNG ALVEOLUS EPITHELIUM; MOUSE; NETWORK INTEGRATION APPROACH; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENESIS; PATHOGENICITY; PREDICTION; REGULATORY MECHANISM; SARS CORONAVIRUS; STATISTICAL MODEL; UNINDEXED SEQUENCE; VIRUS PATHOGENESIS;

EID: 84880780175     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0069374     Document Type: Article
Times cited : (58)

References (69)
  • 1
    • 84856094560 scopus 로고    scopus 로고
    • Differential network biology
    • Ideker T, Krogan NJ, (2012) Differential network biology. Mol Syst Biol 8: 565.
    • (2012) Mol Syst Biol , vol.8 , pp. 565
    • Ideker, T.1    Krogan, N.J.2
  • 2
    • 84862646763 scopus 로고    scopus 로고
    • Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis
    • McDermott JE, Diamond DL, Corley C, Rasmussen AL, Katze MG, et al. (2012) Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis. BMC Syst Biol 6: 28.
    • (2012) BMC Syst Biol , vol.6 , pp. 28
    • McDermott, J.E.1    Diamond, D.L.2    Corley, C.3    Rasmussen, A.L.4    Katze, M.G.5
  • 3
    • 33846400424 scopus 로고    scopus 로고
    • Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
    • Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, et al. (2007) Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol 5: e8.
    • (2007) PLoS Biol , vol.5
    • Faith, J.J.1    Hayete, B.2    Thaden, J.T.3    Mogno, I.4    Wierzbowski, J.5
  • 4
    • 59649108558 scopus 로고    scopus 로고
    • Bottlenecks and hubs in inferred networks are important for virulence in Salmonella typhimurium
    • McDermott JE, Taylor RC, Yoon H, Heffron F, (2009) Bottlenecks and hubs in inferred networks are important for virulence in Salmonella typhimurium. J Comput Biol 16: 169-180.
    • (2009) J Comput Biol , vol.16 , pp. 169-180
    • McDermott, J.E.1    Taylor, R.C.2    Yoon, H.3    Heffron, F.4
  • 5
    • 82555167845 scopus 로고    scopus 로고
    • Defining the players in higher-order networks: predictive modeling for reverse engineering functional influence networks
    • McDermott JE, Archuleta M, Stevens SL, Stenzel-Poore MP, Sanfilippo A (2011) Defining the players in higher-order networks: predictive modeling for reverse engineering functional influence networks. Pac Symp Biocomput: 314-325.
    • (2011) Pac Symp Biocomput , pp. 314-325
    • McDermott, J.E.1    Archuleta, M.2    Stevens, S.L.3    Stenzel-Poore, M.P.4    Sanfilippo, A.5
  • 6
    • 34247622363 scopus 로고    scopus 로고
    • The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics
    • Yu H, Kim PM, Sprecher E, Trifonov V, Gerstein M, (2007) The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLoS Comput Biol 3: e59.
    • (2007) PLoS Comput Biol , vol.3
    • Yu, H.1    Kim, P.M.2    Sprecher, E.3    Trifonov, V.4    Gerstein, M.5
  • 7
    • 84859031549 scopus 로고    scopus 로고
    • Network analysis of epidermal growth factor signaling using integrated genomic, proteomic and phosphorylation data
    • Waters KM, Liu T, Quesenberry RD, Willse AR, Bandyopadhyay S, et al. (2012) Network analysis of epidermal growth factor signaling using integrated genomic, proteomic and phosphorylation data. PLoS One 7: e34515.
    • (2012) PLoS One , vol.7
    • Waters, K.M.1    Liu, T.2    Quesenberry, R.D.3    Willse, A.R.4    Bandyopadhyay, S.5
  • 9
    • 84863418134 scopus 로고    scopus 로고
    • Integrating the Alzheimer's disease proteome and transcriptome: a comprehensive network model of a complex disease
    • Hallock P, Thomas MA, (2012) Integrating the Alzheimer's disease proteome and transcriptome: a comprehensive network model of a complex disease. OMICS 16: 37-49.
    • (2012) OMICS , vol.16 , pp. 37-49
    • Hallock, P.1    Thomas, M.A.2
  • 10
    • 79551644334 scopus 로고    scopus 로고
    • Integrative identification of Arabidopsis mitochondrial proteome and its function exploitation through protein interaction network
    • Cui J, Liu J, Li Y, Shi T, (2011) Integrative identification of Arabidopsis mitochondrial proteome and its function exploitation through protein interaction network. PLoS One 6: e16022.
    • (2011) PLoS One , vol.6
    • Cui, J.1    Liu, J.2    Li, Y.3    Shi, T.4
  • 11
    • 84862333922 scopus 로고    scopus 로고
    • Integrated proteomic, transcriptomic, and biological network analysis of breast carcinoma reveals molecular features of tumorigenesis and clinical relapse
    • M111 014910
    • Imielinski M, Cha S, Rejtar T, Richardson EA, Karger BL, et al. (2012) Integrated proteomic, transcriptomic, and biological network analysis of breast carcinoma reveals molecular features of tumorigenesis and clinical relapse. Mol Cell Proteomics 11: M111 014910.
    • (2012) Mol Cell Proteomics , vol.11
    • Imielinski, M.1    Cha, S.2    Rejtar, T.3    Richardson, E.A.4    Karger, B.L.5
  • 12
    • 58149398620 scopus 로고    scopus 로고
    • Synthetic recombinant bat SARS-like coronavirus is infectious in cultured cells and in mice
    • Becker MM, Graham RL, Donaldson EF, Rockx B, Sims AC, et al. (2008) Synthetic recombinant bat SARS-like coronavirus is infectious in cultured cells and in mice. Proc Natl Acad Sci U S A 105: 19944-19949.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 19944-19949
    • Becker, M.M.1    Graham, R.L.2    Donaldson, E.F.3    Rockx, B.4    Sims, A.C.5
  • 13
    • 84875546545 scopus 로고    scopus 로고
    • Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells
    • Sims AC, Tilton SC, Menachery VD, Gralinski LE, Schafer A, et al. (2013) Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells. J Virol 87: 3885-3902.
    • (2013) J Virol , vol.87 , pp. 3885-3902
    • Sims, A.C.1    Tilton, S.C.2    Menachery, V.D.3    Gralinski, L.E.4    Schafer, A.5
  • 15
    • 0242268397 scopus 로고    scopus 로고
    • Reverse genetics with a full-length infectious cDNA of severe acute respiratory syndrome coronavirus
    • Yount B, Curtis KM, Fritz EA, Hensley LE, Jahrling PB, et al. (2003) Reverse genetics with a full-length infectious cDNA of severe acute respiratory syndrome coronavirus. Proc Natl Acad Sci U S A 100: 12995-13000.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 12995-13000
    • Yount, B.1    Curtis, K.M.2    Fritz, E.A.3    Hensley, L.E.4    Jahrling, P.B.5
  • 16
    • 27744472746 scopus 로고    scopus 로고
    • Severe acute respiratory syndrome coronavirus group-specific open reading frames encode nonessential functions for replication in cell cultures and mice
    • Yount B, Roberts RS, Sims AC, Deming D, Frieman MB, et al. (2005) Severe acute respiratory syndrome coronavirus group-specific open reading frames encode nonessential functions for replication in cell cultures and mice. J Virol 79: 14909-14922.
    • (2005) J Virol , vol.79 , pp. 14909-14922
    • Yount, B.1    Roberts, R.S.2    Sims, A.C.3    Deming, D.4    Frieman, M.B.5
  • 17
    • 80055109399 scopus 로고    scopus 로고
    • Host regulatory network response to infection with highly pathogenic H5N1 avian influenza virus
    • Li C, Bankhead A 3rd, Eisfeld AJ, Hatta Y, Jeng S, et al (2011) Host regulatory network response to infection with highly pathogenic H5N1 avian influenza virus. J Virol 85: 10955-10967.
    • (2011) J Virol , vol.85 , pp. 10955-10967
    • Li, C.1    Bankhead 3rd, A.2    Eisfeld, A.J.3    Hatta, Y.4    Jeng, S.5
  • 18
    • 81055148319 scopus 로고    scopus 로고
    • Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems
    • McDermott JE, Shankaran H, Eisfeld AJ, Belisle SE, Neuman G, et al. (2011) Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems. BMC Syst Biol 5: 190.
    • (2011) BMC Syst Biol , vol.5 , pp. 190
    • McDermott, J.E.1    Shankaran, H.2    Eisfeld, A.J.3    Belisle, S.E.4    Neuman, G.5
  • 19
    • 84859371992 scopus 로고    scopus 로고
    • Gene network inference and visualization tools for biologists: application to new human transcriptome datasets
    • Hurley D, Araki H, Tamada Y, Dunmore B, Sanders D, et al. (2012) Gene network inference and visualization tools for biologists: application to new human transcriptome datasets. Nucleic Acids Res 40: 2377-2398.
    • (2012) Nucleic Acids Res , vol.40 , pp. 2377-2398
    • Hurley, D.1    Araki, H.2    Tamada, Y.3    Dunmore, B.4    Sanders, D.5
  • 20
    • 84871811830 scopus 로고    scopus 로고
    • Infection Strategies of Bacterial and Viral Pathogens through Pathogen-Human Protein-Protein Interactions
    • Durmus Tekir S, Cakir T, Ulgen KO, (2012) Infection Strategies of Bacterial and Viral Pathogens through Pathogen-Human Protein-Protein Interactions. Front Microbiol 3: 46.
    • (2012) Front Microbiol , vol.3 , pp. 46
    • Durmus Tekir, S.1    Cakir, T.2    Ulgen, K.O.3
  • 21
    • 76349125478 scopus 로고    scopus 로고
    • Temporal proteome and lipidome profiles reveal hepatitis C virus-associated reprogramming of hepatocellular metabolism and bioenergetics
    • Diamond DL, Syder AJ, Jacobs JM, Sorensen CM, Walters KA, et al. (2010) Temporal proteome and lipidome profiles reveal hepatitis C virus-associated reprogramming of hepatocellular metabolism and bioenergetics. PLoS Pathog 6: e1000719.
    • (2010) PLoS Pathog , vol.6
    • Diamond, D.L.1    Syder, A.J.2    Jacobs, J.M.3    Sorensen, C.M.4    Walters, K.A.5
  • 22
    • 70349570737 scopus 로고    scopus 로고
    • Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients
    • Saris CG, Horvath S, van Vught PW, van Es MA, Blauw HM, et al. (2009) Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients. BMC Genomics 10: 405.
    • (2009) BMC Genomics , vol.10 , pp. 405
    • Saris, C.G.1    Horvath, S.2    van Vught, P.W.3    van Es, M.A.4    Blauw, H.M.5
  • 23
    • 72549116887 scopus 로고    scopus 로고
    • The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus
    • Brass AL, Huang IC, Benita Y, John SP, Krishnan MN, et al. (2009) The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus. Cell 139: 1243-1254.
    • (2009) Cell , vol.139 , pp. 1243-1254
    • Brass, A.L.1    Huang, I.C.2    Benita, Y.3    John, S.P.4    Krishnan, M.N.5
  • 24
    • 49649127852 scopus 로고    scopus 로고
    • Drosophila RNAi screen identifies host genes important for influenza virus replication
    • Hao L, Sakurai A, Watanabe T, Sorensen E, Nidom CA, et al. (2008) Drosophila RNAi screen identifies host genes important for influenza virus replication. Nature 454: 890-893.
    • (2008) Nature , vol.454 , pp. 890-893
    • Hao, L.1    Sakurai, A.2    Watanabe, T.3    Sorensen, E.4    Nidom, C.A.5
  • 25
    • 76749090540 scopus 로고    scopus 로고
    • Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication
    • Karlas A, Machuy N, Shin Y, Pleissner KP, Artarini A, et al. (2010) Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication. Nature 463: 818-822.
    • (2010) Nature , vol.463 , pp. 818-822
    • Karlas, A.1    Machuy, N.2    Shin, Y.3    Pleissner, K.P.4    Artarini, A.5
  • 26
    • 76749108989 scopus 로고    scopus 로고
    • Human host factors required for influenza virus replication
    • Konig R, Stertz S, Zhou Y, Inoue A, Hoffmann HH, et al. (2010) Human host factors required for influenza virus replication. Nature 463: 813-817.
    • (2010) Nature , vol.463 , pp. 813-817
    • Konig, R.1    Stertz, S.2    Zhou, Y.3    Inoue, A.4    Hoffmann, H.H.5
  • 27
    • 72249103485 scopus 로고    scopus 로고
    • A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection
    • Shapira SD, Gat-Viks I, Shum BO, Dricot A, de Grace MM, et al. (2009) A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection. Cell 139: 1255-1267.
    • (2009) Cell , vol.139 , pp. 1255-1267
    • Shapira, S.D.1    Gat-Viks, I.2    Shum, B.O.3    Dricot, A.4    de Grace, M.M.5
  • 28
    • 64849116933 scopus 로고    scopus 로고
    • The use of Random Homozygous Gene Perturbation to identify novel host-oriented targets for influenza
    • Sui B, Bamba D, Weng K, Ung H, Chang S, et al. (2009) The use of Random Homozygous Gene Perturbation to identify novel host-oriented targets for influenza. Virology 387: 473-481.
    • (2009) Virology , vol.387 , pp. 473-481
    • Sui, B.1    Bamba, D.2    Weng, K.3    Ung, H.4    Chang, S.5
  • 29
    • 70449561448 scopus 로고    scopus 로고
    • Systems-based candidate genes for human response to influenza infection
    • Zhang L, Katz JM, Gwinn M, Dowling NF, Khoury MJ, (2009) Systems-based candidate genes for human response to influenza infection. Infect Genet Evol 9: 1148-1157.
    • (2009) Infect Genet Evol , vol.9 , pp. 1148-1157
    • Zhang, L.1    Katz, J.M.2    Gwinn, M.3    Dowling, N.F.4    Khoury, M.J.5
  • 30
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, et al. (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 102: 15545-15550.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 15545-15550
    • Subramanian, A.1    Tamayo, P.2    Mootha, V.K.3    Mukherjee, S.4    Ebert, B.L.5
  • 31
    • 33747813561 scopus 로고    scopus 로고
    • The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
    • Bonneau R, Reiss DJ, Shannon P, Facciotti M, Hood L, et al. (2006) The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo. Genome Biol 7: R36.
    • (2006) Genome Biol , vol.7
    • Bonneau, R.1    Reiss, D.J.2    Shannon, P.3    Facciotti, M.4    Hood, L.5
  • 32
    • 79951919797 scopus 로고    scopus 로고
    • Controlling the response: predictive modeling of a highly central, pathogen-targeted core response module in macrophage activation
    • McDermott JE, Archuleta M, Thrall BD, Adkins JN, Waters KM, (2011) Controlling the response: predictive modeling of a highly central, pathogen-targeted core response module in macrophage activation. PLoS One 6: e14673.
    • (2011) PLoS One , vol.6
    • McDermott, J.E.1    Archuleta, M.2    Thrall, B.D.3    Adkins, J.N.4    Waters, K.M.5
  • 33
    • 29744455608 scopus 로고    scopus 로고
    • Severe acute respiratory syndrome coronavirus infection of human ciliated airway epithelia: role of ciliated cells in viral spread in the conducting airways of the lungs
    • Sims AC, Baric RS, Yount B, Burkett SE, Collins PL, et al. (2005) Severe acute respiratory syndrome coronavirus infection of human ciliated airway epithelia: role of ciliated cells in viral spread in the conducting airways of the lungs. J Virol 79: 15511-15524.
    • (2005) J Virol , vol.79 , pp. 15511-15524
    • Sims, A.C.1    Baric, R.S.2    Yount, B.3    Burkett, S.E.4    Collins, P.L.5
  • 34
    • 79959590612 scopus 로고    scopus 로고
    • Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella
    • Yoon H, Ansong C, McDermott JE, Gritsenko M, Smith RD, et al. (2011) Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella. BMC Syst Biol 5: 100.
    • (2011) BMC Syst Biol , vol.5 , pp. 100
    • Yoon, H.1    Ansong, C.2    McDermott, J.E.3    Gritsenko, M.4    Smith, R.D.5
  • 37
    • 78650754831 scopus 로고    scopus 로고
    • Inflammasomes as mediators of immunity against influenza virus
    • Pang IK, Iwasaki A, (2011) Inflammasomes as mediators of immunity against influenza virus. Trends Immunol 32: 34-41.
    • (2011) Trends Immunol , vol.32 , pp. 34-41
    • Pang, I.K.1    Iwasaki, A.2
  • 40
    • 73949153497 scopus 로고    scopus 로고
    • Cellular immune responses to severe acute respiratory syndrome coronavirus (SARS-CoV) infection in senescent BALB/c mice: CD4+T cells are important in control of SARS-CoV infection
    • Chen J, Lau YF, Lamirande EW, Paddock CD, Bartlett JH, et al. (2010) Cellular immune responses to severe acute respiratory syndrome coronavirus (SARS-CoV) infection in senescent BALB/c mice: CD4+T cells are important in control of SARS-CoV infection. J Virol 84: 1289-1301.
    • (2010) J Virol , vol.84 , pp. 1289-1301
    • Chen, J.1    Lau, Y.F.2    Lamirande, E.W.3    Paddock, C.D.4    Bartlett, J.H.5
  • 41
    • 84865637166 scopus 로고    scopus 로고
    • Protective effects of long pentraxin PTX3 on lung injury in a severe acute respiratory syndrome model in mice
    • Han B, Ma X, Zhang J, Zhang Y, Bai X, et al. (2012) Protective effects of long pentraxin PTX3 on lung injury in a severe acute respiratory syndrome model in mice. Lab Invest 92: 1285-1296.
    • (2012) Lab Invest , vol.92 , pp. 1285-1296
    • Han, B.1    Ma, X.2    Zhang, J.3    Zhang, Y.4    Bai, X.5
  • 42
    • 79955401296 scopus 로고    scopus 로고
    • Distinct severe acute respiratory syndrome coronavirus-induced acute lung injury pathways in two different nonhuman primate species
    • Smits SL, van den Brand JM, de Lang A, Leijten LM, van Ijcken WF, et al. (2011) Distinct severe acute respiratory syndrome coronavirus-induced acute lung injury pathways in two different nonhuman primate species. J Virol 85: 4234-4245.
    • (2011) J Virol , vol.85 , pp. 4234-4245
    • Smits, S.L.1    van den Brand, J.M.2    de Lang, A.3    Leijten, L.M.4    van Ijcken, W.F.5
  • 43
    • 35148876973 scopus 로고    scopus 로고
    • The coronavirus spike protein induces endoplasmic reticulum stress and upregulation of intracellular chemokine mRNA concentrations
    • Versteeg GA, van de Nes PS, Bredenbeek PJ, Spaan WJ, (2007) The coronavirus spike protein induces endoplasmic reticulum stress and upregulation of intracellular chemokine mRNA concentrations. J Virol 81: 10981-10990.
    • (2007) J Virol , vol.81 , pp. 10981-10990
    • Versteeg, G.A.1    van de Nes, P.S.2    Bredenbeek, P.J.3    Spaan, W.J.4
  • 44
    • 33845414705 scopus 로고    scopus 로고
    • Augmentation of chemokine production by severe acute respiratory syndrome coronavirus 3a/X1 and 7a/X4 proteins through NF-kappaB activation
    • Kanzawa N, Nishigaki K, Hayashi T, Ishii Y, Furukawa S, et al. (2006) Augmentation of chemokine production by severe acute respiratory syndrome coronavirus 3a/X1 and 7a/X4 proteins through NF-kappaB activation. FEBS Lett 580: 6807-6812.
    • (2006) FEBS Lett , vol.580 , pp. 6807-6812
    • Kanzawa, N.1    Nishigaki, K.2    Hayashi, T.3    Ishii, Y.4    Furukawa, S.5
  • 46
    • 70449518082 scopus 로고    scopus 로고
    • ATF3 transcription factor and its emerging roles in immunity and cancer
    • Thompson MR, Xu D, Williams BR, (2009) ATF3 transcription factor and its emerging roles in immunity and cancer. J Mol Med (Berl) 87: 1053-1060.
    • (2009) J Mol Med (Berl) , vol.87 , pp. 1053-1060
    • Thompson, M.R.1    Xu, D.2    Williams, B.R.3
  • 47
    • 84863596116 scopus 로고    scopus 로고
    • A20 (Tnfaip3) deficiency in myeloid cells protects against influenza A virus infection
    • Maelfait J, Roose K, Bogaert P, Sze M, Saelens X, et al. (2012) A20 (Tnfaip3) deficiency in myeloid cells protects against influenza A virus infection. PLoS Pathog 8: e1002570.
    • (2012) PLoS Pathog , vol.8
    • Maelfait, J.1    Roose, K.2    Bogaert, P.3    Sze, M.4    Saelens, X.5
  • 48
    • 77649277983 scopus 로고    scopus 로고
    • Dynamic innate immune responses of human bronchial epithelial cells to severe acute respiratory syndrome-associated coronavirus infection
    • Yoshikawa T, Hill TE, Yoshikawa N, Popov VL, Galindo CL, et al. (2010) Dynamic innate immune responses of human bronchial epithelial cells to severe acute respiratory syndrome-associated coronavirus infection. PLoS One 5: e8729.
    • (2010) PLoS One , vol.5
    • Yoshikawa, T.1    Hill, T.E.2    Yoshikawa, N.3    Popov, V.L.4    Galindo, C.L.5
  • 49
    • 56449108780 scopus 로고    scopus 로고
    • Systematic assembly of a full-length infectious clone of human coronavirus NL63
    • Donaldson EF, Yount B, Sims AC, Burkett S, Pickles RJ, et al. (2008) Systematic assembly of a full-length infectious clone of human coronavirus NL63. J Virol 82: 11948-11957.
    • (2008) J Virol , vol.82 , pp. 11948-11957
    • Donaldson, E.F.1    Yount, B.2    Sims, A.C.3    Burkett, S.4    Pickles, R.J.5
  • 50
    • 77957954193 scopus 로고    scopus 로고
    • Culturing the unculturable: human coronavirus HKU1 infects, replicates, and produces progeny virions in human ciliated airway epithelial cell cultures
    • Pyrc K, Sims AC, Dijkman R, Jebbink M, Long C, et al. (2010) Culturing the unculturable: human coronavirus HKU1 infects, replicates, and produces progeny virions in human ciliated airway epithelial cell cultures. J Virol 84: 11255-11263.
    • (2010) J Virol , vol.84 , pp. 11255-11263
    • Pyrc, K.1    Sims, A.C.2    Dijkman, R.3    Jebbink, M.4    Long, C.5
  • 51
    • 33845422979 scopus 로고    scopus 로고
    • Characterization of the human pancreatic islet proteome by two-dimensional LC/MS/MS
    • Metz TO, Jacobs JM, Gritsenko MA, Fontes G, Qian WJ, et al. (2006) Characterization of the human pancreatic islet proteome by two-dimensional LC/MS/MS. J Proteome Res 5: 3345-3354.
    • (2006) J Proteome Res , vol.5 , pp. 3345-3354
    • Metz, T.O.1    Jacobs, J.M.2    Gritsenko, M.A.3    Fontes, G.4    Qian, W.J.5
  • 52
    • 53049108033 scopus 로고    scopus 로고
    • Characterization of the mouse pancreatic islet proteome and comparative analysis with other mouse tissues
    • Petyuk VA, Qian WJ, Hinault C, Gritsenko MA, Singhal M, et al. (2008) Characterization of the mouse pancreatic islet proteome and comparative analysis with other mouse tissues. J Proteome Res 7: 3114-3126.
    • (2008) J Proteome Res , vol.7 , pp. 3114-3126
    • Petyuk, V.A.1    Qian, W.J.2    Hinault, C.3    Gritsenko, M.A.4    Singhal, M.5
  • 53
    • 33646264529 scopus 로고    scopus 로고
    • Advances in proteomics data analysis and display using an accurate mass and time tag approach
    • Zimmer JS, Monroe ME, Qian WJ, Smith RD, (2006) Advances in proteomics data analysis and display using an accurate mass and time tag approach. Mass Spectrom Rev 25: 450-482.
    • (2006) Mass Spectrom Rev , vol.25 , pp. 450-482
    • Zimmer, J.S.1    Monroe, M.E.2    Qian, W.J.3    Smith, R.D.4
  • 54
    • 41149134523 scopus 로고    scopus 로고
    • Fully automated four-column capillary LC-MS system for maximizing throughput in proteomic analyses
    • Livesay EA, Tang K, Taylor BK, Buschbach MA, Hopkins DF, et al. (2008) Fully automated four-column capillary LC-MS system for maximizing throughput in proteomic analyses. Anal Chem 80: 294-302.
    • (2008) Anal Chem , vol.80 , pp. 294-302
    • Livesay, E.A.1    Tang, K.2    Taylor, B.K.3    Buschbach, M.A.4    Hopkins, D.F.5
  • 56
    • 62149121444 scopus 로고    scopus 로고
    • Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data
    • Jaitly N, Mayampurath A, Littlefield K, Adkins JN, Anderson GA, et al. (2009) Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data. BMC Bioinformatics 10: 87.
    • (2009) BMC Bioinformatics , vol.10 , pp. 87
    • Jaitly, N.1    Mayampurath, A.2    Littlefield, K.3    Adkins, J.N.4    Anderson, G.A.5
  • 57
    • 34548136221 scopus 로고    scopus 로고
    • VIPER: an advanced software package to support high-throughput LC-MS peptide identification
    • Monroe ME, Tolic N, Jaitly N, Shaw JL, Adkins JN, et al. (2007) VIPER: an advanced software package to support high-throughput LC-MS peptide identification. Bioinformatics 23: 2021-2023.
    • (2007) Bioinformatics , vol.23 , pp. 2021-2023
    • Monroe, M.E.1    Tolic, N.2    Jaitly, N.3    Shaw, J.L.4    Adkins, J.N.5
  • 58
    • 80053982558 scopus 로고    scopus 로고
    • Improved quality control processing of peptide-centric LC-MS proteomics data
    • Matzke MM, Waters KM, Metz TO, Jacobs JM, Sims AC, et al. (2011) Improved quality control processing of peptide-centric LC-MS proteomics data. Bioinformatics 27: 2866-2872.
    • (2011) Bioinformatics , vol.27 , pp. 2866-2872
    • Matzke, M.M.1    Waters, K.M.2    Metz, T.O.3    Jacobs, J.M.4    Sims, A.C.5
  • 59
    • 82955187002 scopus 로고    scopus 로고
    • A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors
    • Webb-Robertson BJ, Matzke MM, Jacobs JM, Pounds JG, Waters KM, (2011) A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors. Proteomics 11: 4736-4741.
    • (2011) Proteomics , vol.11 , pp. 4736-4741
    • Webb-Robertson, B.J.1    Matzke, M.M.2    Jacobs, J.M.3    Pounds, J.G.4    Waters, K.M.5
  • 61
    • 78149378686 scopus 로고    scopus 로고
    • Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data
    • Webb-Robertson BJ, McCue LA, Waters KM, Matzke MM, Jacobs JM, et al. (2010) Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data. J Proteome Res 9: 5748-5756.
    • (2010) J Proteome Res , vol.9 , pp. 5748-5756
    • Webb-Robertson, B.J.1    McCue, L.A.2    Waters, K.M.3    Matzke, M.M.4    Jacobs, J.M.5
  • 63
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 64
    • 77957963666 scopus 로고    scopus 로고
    • Transcriptomic analysis reveals a mechanism for a prefibrotic phenotype in STAT1 knockout mice during severe acute respiratory syndrome coronavirus infection
    • Zornetzer GA, Frieman MB, Rosenzweig E, Korth MJ, Page C, et al. (2010) Transcriptomic analysis reveals a mechanism for a prefibrotic phenotype in STAT1 knockout mice during severe acute respiratory syndrome coronavirus infection. J Virol 84: 11297-11309.
    • (2010) J Virol , vol.84 , pp. 11297-11309
    • Zornetzer, G.A.1    Frieman, M.B.2    Rosenzweig, E.3    Korth, M.J.4    Page, C.5
  • 65
    • 79955031158 scopus 로고    scopus 로고
    • Beta-2 microglobulin as an immunological marker to assess the progression of human immunodeficiency virus infected patients on highly active antiretroviral therapy
    • Chitra P, Bakthavatsalam B, Palvannan T, (2011) Beta-2 microglobulin as an immunological marker to assess the progression of human immunodeficiency virus infected patients on highly active antiretroviral therapy. Clin Chim Acta 412: 1151-1154.
    • (2011) Clin Chim Acta , vol.412 , pp. 1151-1154
    • Chitra, P.1    Bakthavatsalam, B.2    Palvannan, T.3
  • 66
    • 45749135827 scopus 로고    scopus 로고
    • Identification of a novel transcriptional repressor (HEPIS) that interacts with nsp-10 of SARS coronavirus
    • Hong M, Li W, Wang L, Jiang L, Liu L, et al. (2008) Identification of a novel transcriptional repressor (HEPIS) that interacts with nsp-10 of SARS coronavirus. Viral Immunol 21: 153-162.
    • (2008) Viral Immunol , vol.21 , pp. 153-162
    • Hong, M.1    Li, W.2    Wang, L.3    Jiang, L.4    Liu, L.5
  • 67
    • 79961074110 scopus 로고    scopus 로고
    • Critical role for macrophage migration inhibitory factor (MIF) in Ross River virus-induced arthritis and myositis
    • Herrero LJ, Nelson M, Srikiatkhachorn A, Gu R, Anantapreecha S, et al. (2011) Critical role for macrophage migration inhibitory factor (MIF) in Ross River virus-induced arthritis and myositis. Proc Natl Acad Sci U S A 108: 12048-12053.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 12048-12053
    • Herrero, L.J.1    Nelson, M.2    Srikiatkhachorn, A.3    Gu, R.4    Anantapreecha, S.5
  • 68
    • 0033628333 scopus 로고    scopus 로고
    • Detection of annexins I and IV in bronchoalveolar lavage fluids from calves inoculated with bovine herpes virus-1
    • Katoh N, (2000) Detection of annexins I and IV in bronchoalveolar lavage fluids from calves inoculated with bovine herpes virus-1. J Vet Med Sci 62: 37-41.
    • (2000) J Vet Med Sci , vol.62 , pp. 37-41
    • Katoh, N.1
  • 69
    • 33746679793 scopus 로고    scopus 로고
    • Gene expression profiling of the host response to HIV-1 B, C, or A/E infection in monocyte-derived dendritic cells
    • Solis M, Wilkinson P, Romieu R, Hernandez E, Wainberg MA, et al. (2006) Gene expression profiling of the host response to HIV-1 B, C, or A/E infection in monocyte-derived dendritic cells. Virology 352: 86-99.
    • (2006) Virology , vol.352 , pp. 86-99
    • Solis, M.1    Wilkinson, P.2    Romieu, R.3    Hernandez, E.4    Wainberg, M.A.5


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