A theoretical study on the binding of O2, NO and CO to heme proteins

Journal of Inorganic Biochemistry

Volumn 99, Issue 4, 2005, Pages 949-958

  Blomberg, L Mattias ^a   Blomberg, Margareta R A ^a   Siegbahn, Per E M ^a  

^a STOCKHOLM UNIVERSITY   (Sweden)

Author keywords

B3LYP; CO; Cytochrome oxidase; DFT; Heme; Myoglobin; NO; O2

Indexed keywords

BENZENE; CARBON MONOXIDE; CYTOCHROME C OXIDASE; HEMOPROTEIN; HISTIDINE; MYOGLOBIN; NITRIC OXIDE; OXIDE; PORPHYRIN;

ARTICLE; COMPARATIVE STUDY; DENSITY FUNCTIONAL THEORY; ELECTROCHEMISTRY; ENTHALPY; GEOMETRY; MODEL; PROTEIN BINDING; THEORETICAL STUDY;

EID: 16244415918     PISSN: 01620134     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jinorgbio.2005.02.014     Document Type: Article

References (51)

1. G.C. Brown Biochim. Biophys. Acta 1504 2001 46 57
2. M.R.A. Blomberg, P.E.M. Siegbahn, G.T. Babcock, and M. Wikström J. Am. Chem. Soc. 122 2000 12848 12858
3. M.R.A. Blomberg, P.E.M. Siegbahn, and M. Wikström Inorg. Chem. 42 2003 5231 5243
4. J.E. Morgan, M.I. Verkhovsky, and M. Wikström J. Bioenerg. Biomemb. 26 1994 599 608
5. M. Wikström, J.E. Morgan, and M.I. Verkhovsky J. Bioenerg. Biomemb. 30 1998 139 145
6. M. Wikström Biochim. Biophys. Acta 1458 2000 188 198
7. M. Wikström, M.I. Verkhovsky, and G. Hummer Biochim. Biophys. Acta 1604 2003 61 65
8. H. Michel Proc. Natl. Acad. Sci. USA 95 1998 12819 12824
9. H. Michel Biochemistry 38 1999 15129 15140
10. M. Ruitenberg, A. Kannt, E. Bamberg, K. Fendler, and H. Michel Nature 417 2002 99 102
11. P. Brzezinski, and G. Larsson Biochim. Biophys. Acta 1604 2003 61 65
12. P.E.M. Siegbahn, M.R.A. Blomberg, and L.M. Blomberg J. Phys. Chem. B 107 2003 10946 10955
13. A. Giuffrè, G. Stubauer, P. Sarti, M. Brunori, W.G. Zumft, G. Buse, and T. Soulimane Proc. Natl. Acad. Sci. USA 96 1999 14718 14723
14. E. Forte, A. Urbani, M. Saraste, P. Sarti, M. Brunori, and A. Giuffrè Eur. J. Biochem. 268 2001 6486 6490
15. C.S. Butler, E. Forte, F.M. Scandurra, M. Arese, A. Giuffrè, C. Greenwood, and P. Sarti Biochem. Biophys. Res. Commun. 296 2002 1272 1278
16. G.C. Brown, and C.E. Cooper FEBS Lett. 356 1994 295 298
17. J.S. Olson, and G.N. Phillips Jr. J. Biol. Inorg. Chem. 2 1997 544 552
18. M. Kelm Biochim. Biophys. Acta 1411 1999 273 289
19. H. Ischiropoulos Arch. Biochem. Biophys. 356 1998 1 11
20. R. Radi, J.S. Beckman, K.M. Bush, and B.A. Freeman J. Biol. Chem. 266 1991 4244 4250
21. P.A. King, V.E. Anderson, J.O. Edwards, G. Gustafson, R.C. Plumb, and J.W. Suggs J. Am. Chem. Soc. 114 1992 5430 5432
22. R. Kissner, T. Nauser, P. Bugnon, P.G. Lye, and W.H. Koppenol Chem. Res. Toxicol. 10 1997 1285 1292
23. L.M. Blomberg, M.R.A. Blomberg, and P.E.M. Siegbahn J. Biol. Inorg. Chem. 9 2004 923 935
24. T. Soulimane, G. Buse, G.P. Bourenkov, H.D. Bartunik, R. Huber, and M.E. Than EMBO J. 19 2000 1766 1776
25. R. Maurus, R. Bogumil, N.T. Nguyen, G. Mauk, and G. Brayer Nitric oxide: Biol. Chem. 332 1998 67 74
26. A.D. Becke J. Chem. Phys. 98 1993 5648 5652
27. C. Lee, W. Yang, and R.G. Parr Phys. Rev. B 37 1988 785 789
28. M.J. Frisch Gaussian 03, Revision B. 03 2003 Gaussian Inc. Pittsburgh, PA
29. Schrödinger, Inc., Portland, Oregon, Jaguar 4.2, 2000
30. D.J. Tannor, B. Marten, R. Murphy, R.A. Friesner, D. Sitkoff, A. Nicholls, M. Ringnalda, W.A. Goddard III, and B. Honig J. Am. Chem. Soc. 116 1994 11875 11882
31. M.R.A. Blomberg, P.E.M. Siegbahn, and G.T. Babcock J. Am. Chem. Soc. 120 1998 8812 8824
32. L. Noodleman, and A.C. Case Adv. Inorg. Chem. 38 1992 423 470
33. L.A. Curtiis, K. Raghavachari, R.C. Redfern, and J.A. Pople J. Chem. Phys. 112 2000 7374 7383
34. P.E.M. Siegbahn, and M.R.A. Blomberg Annu. Rev. Phys. Chem. 50 1999 221 249
35. P.E.M. Siegbahn, and M.R.A. Blomberg Chem. Rev. 100 2000 421 437
36. M.R.A. Blomberg, and P.E.M. Siegbahn J. Phys. Chem. B 105 2001 9375 9386
37. C.E. Cooper Biochim. Biophys. Acta 1411 1999 290 309
38. B.A. Springer, K.D. Egeberg, S.G. Sligar, R.J. Rohlfs, A.J. Mathews, and S. Olson J. Biol. Chem. 264 1989 3057 3060
39. B.A. Springer, S.G. Sligar, J.S. Olson, and J.G.N. Phillips Chem. Rev. 94 1994 699 714
40. E. Sigfridsson, and U. Ryde J. Biol. Inorg. Chem. 4 1999 99 110
41. E. Sigfridsson, and U. Ryde J. Inorg. Biochem. 91 2002 101 115
42. C. Rovira, K. Kunc, J. Hutter, P. Ballone, and M. Parrinello J. Phys. Chem. A 101 1997 8914 8925
43. C. Rovira, K. Kunc, J. Hutter, P. Ballone, and M. Parrinello Int. J. Quantum Chem. 69 1998 31 35
44. K.P. Jensen, B.O. Roos, and U. Ryde J. Inorg. Biochem. 99 2005 45 54
45. J.N. Harvey J. Am. Chem. Soc. 122 2000 12401 12402
46. J.N. Harvey Faraday Discuss. 127 2004 165 177
47. S. Franzen Proc. Natl. Acad. Sci. USA 99 2002 16754 16759
48. R. Hoffmann, M.M.-L. Chen, and D.L. Thorn Inorg. Chem. 16 1977 503 511
49. K.P. Jensen, B.O. Roos, U. Ryde, J. Inorg. Biochem, this issue; doi: 10.1016/j.jinorgbio.2005.02.013
50. M.L. Blomberg, M.R.A. Blomberg, and P.E.M. Siegbahn J. Phys. Chem. B 107 2003 3297 3308
51. M.R.A. Blomberg, P.E.M. Siegbahn, and M. Svensson J. Chem. Phys. 104 1996 9546 9554