-
1
-
-
55849109584
-
The epigenetics of rRNA genes: from molecular to chromosome biology
-
McStay B, Grummt I. 2008. The epigenetics of rRNA genes: from molecular to chromosome biology. Annu. Rev. Cell Dev. Biol. 24:131-157.
-
(2008)
Annu. Rev. Cell Dev. Biol.
, vol.24
, pp. 131-157
-
-
McStay, B.1
Grummt, I.2
-
2
-
-
0033229970
-
The economics of ribosome biosynthesis in yeast
-
Warner JR. 1999. The economics of ribosome biosynthesis in yeast. Trends Biochem. Sci. 24:437-440.
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 437-440
-
-
Warner, J.R.1
-
3
-
-
0018423970
-
Yeast ribosomal DNA genes are located on chromosome XII
-
U. S. A.
-
Petes TD. 1979. Yeast ribosomal DNA genes are located on chromosome XII. Proc. Natl. Acad. Sci. U. S. A. 76:410-414.
-
(1979)
Proc. Natl. Acad. Sci.
, vol.76
, pp. 410-414
-
-
Petes, T.D.1
-
4
-
-
0027270476
-
Chromatin structures and transcription of rDNA in yeast Saccharomyces cerevisiae
-
Dammann R, Lucchini R, Koller T, Sogo JM. 1993. Chromatin structures and transcription of rDNA in yeast Saccharomyces cerevisiae. Nucleic Acids Res. 21:2331-2338.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 2331-2338
-
-
Dammann, R.1
Lucchini, R.2
Koller, T.3
Sogo, J.M.4
-
5
-
-
27644597191
-
Psoralen photocrosslinking, a tool to study the chromatin structure of RNA polymerase I-transcribed ribosomal genes
-
Toussaint M, Levasseur G, Tremblay M, Paquette M, Conconi A. 2005. Psoralen photocrosslinking, a tool to study the chromatin structure of RNA polymerase I-transcribed ribosomal genes. Biochem. Cell Biol. 83: 449-459.
-
(2005)
Biochem. Cell Biol.
, vol.83
, pp. 449-459
-
-
Toussaint, M.1
Levasseur, G.2
Tremblay, M.3
Paquette, M.4
Conconi, A.5
-
6
-
-
0024392359
-
Two different chromatin structures coexist in ribosomal RNA genes throughout the cell cycle
-
Conconi A, Widmer RM, Koller T, Sogo JM. 1989. Two different chromatin structures coexist in ribosomal RNA genes throughout the cell cycle. Cell 57:753-761.
-
(1989)
Cell
, vol.57
, pp. 753-761
-
-
Conconi, A.1
Widmer, R.M.2
Koller, T.3
Sogo, J.M.4
-
7
-
-
0037370054
-
In exponentially growing Saccharomyces cerevisiae cells, rRNA synthesis is determined by the summed RNA polymerase I loading rate rather than by the number of active genes
-
French SL, Osheim YN, Cioci F, Nomura M, Beyer AL. 2003. In exponentially growing Saccharomyces cerevisiae cells, rRNA synthesis is determined by the summed RNA polymerase I loading rate rather than by the number of active genes. Mol. Cell. Biol. 23:1558-1568.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 1558-1568
-
-
French, S.L.1
Osheim, Y.N.2
Cioci, F.3
Nomura, M.4
Beyer, A.L.5
-
8
-
-
2942584864
-
"Sleeping beauty": quiescence in Saccharomyces cerevisiae
-
Gray JV, Petsko GA, Johnston GC, Ringe D, Singer RA, Werner-Washburne M. 2004. "Sleeping beauty": quiescence in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 68:187-206.
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 187-206
-
-
Gray, J.V.1
Petsko, G.A.2
Johnston, G.C.3
Ringe, D.4
Singer, R.A.5
Werner-Washburne, M.6
-
9
-
-
43249097755
-
Actively transcribed rRNA genes in S. cerevisiae are organized in a specialized chromatin associated with the high-mobility group protein Hmo1 and are largely devoid of histone molecules
-
Merz K, Hondele M, Goetze H, Gmelch K, Stoeckl U, Griesenbeck J. 2008. Actively transcribed rRNA genes in S. cerevisiae are organized in a specialized chromatin associated with the high-mobility group protein Hmo1 and are largely devoid of histone molecules. Genes Dev. 22:1190-1204.
-
(2008)
Genes Dev.
, vol.22
, pp. 1190-1204
-
-
Merz, K.1
Hondele, M.2
Goetze, H.3
Gmelch, K.4
Stoeckl, U.5
Griesenbeck, J.6
-
10
-
-
33746641324
-
Nucleosome displacement in transcription
-
Workman JL. 2006. Nucleosome displacement in transcription. Genes Dev. 20:2009-2017.
-
(2006)
Genes Dev
, vol.20
, pp. 2009-2017
-
-
Workman, J.L.1
-
11
-
-
27744577727
-
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
-
Carrozza MJ, Li B, Florens L, Suganuma T, Swanson SK, Lee KK, Shia WJ, Anderson S, Yates J, Washburn MP, Workman JL. 2005. Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 123:581-592.
-
(2005)
Cell
, vol.123
, pp. 581-592
-
-
Carrozza, M.J.1
Li, B.2
Florens, L.3
Suganuma, T.4
Swanson, S.K.5
Lee, K.K.6
Shia, W.J.7
Anderson, S.8
Yates, J.9
Washburn, M.P.10
Workman, J.L.11
-
12
-
-
84861531483
-
Overcoming the nucleosome barrier during transcript elongation
-
Petesch SJ, Lis JT. 2012. Overcoming the nucleosome barrier during transcript elongation. Trends Genet. 28:285-294.
-
(2012)
Trends Genet
, vol.28
, pp. 285-294
-
-
Petesch, S.J.1
Lis, J.T.2
-
13
-
-
79955802907
-
Establishment and maintenance of alternative chromatin states at a multicopy gene locus
-
Wittner M, Hamperl S, Stockl U, Seufert W, Tschochner H, Milkereit P, Griesenbeck J. 2011. Establishment and maintenance of alternative chromatin states at a multicopy gene locus. Cell 145:543-554.
-
(2011)
Cell
, vol.145
, pp. 543-554
-
-
Wittner, M.1
Hamperl, S.2
Stockl, U.3
Seufert, W.4
Tschochner, H.5
Milkereit, P.6
Griesenbeck, J.7
-
14
-
-
0037119973
-
RPD3 is required for the inactivation of yeast ribosomal DNA genes in stationary phase
-
Sandmeier JJ, French S, Osheim Y, Cheung WL, Gallo CM, Beyer AL, Smith JS. 2002. RPD3 is required for the inactivation of yeast ribosomal DNA genes in stationary phase. EMBO J. 21:4959-4968.
-
(2002)
EMBO J
, vol.21
, pp. 4959-4968
-
-
Sandmeier, J.J.1
French, S.2
Osheim, Y.3
Cheung, W.L.4
Gallo, C.M.5
Beyer, A.L.6
Smith, J.S.7
-
15
-
-
84880671139
-
Methods in yeast genetics, 2000 ed
-
Burke D, Dawson D, Stearns T. 2000. Methods in yeast genetics, 2000 ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2000)
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
-
Burke, D.1
Dawson, D.2
Stearns, T.3
-
16
-
-
0031820288
-
Additional modules for versatile and economical PCR-based gene deletion and modification in Sac-charomyces cerevisiae
-
Longtine MS, McKenzie A, III, Demarini DJ, Shah NG, Wach A, Brachat A, Philippsen P, Pringle JR. 1998. Additional modules for versatile and economical PCR-based gene deletion and modification in Sac-charomyces cerevisiae. Yeast 14:953-961.
-
(1998)
Yeast
, vol.14
, pp. 953-961
-
-
Longtine, M.S.1
McKenzie III, A.2
Demarini, D.J.3
Shah, N.G.4
Wach, A.5
Brachat, A.6
Philippsen, P.7
Pringle, J.R.8
-
17
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami S, Huh WK, Bower K, Howson RW, Belle A, Dephoure N, O'Shea EK, Weissman JS. 2003. Global analysis of protein expression in yeast. Nature 425:737-741.
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
18
-
-
67849106506
-
Genetic identification of factors that modulate ribosomal DNA transcription in Saccharomyces cerevisiae
-
Hontz RD, Niederer RO, Johnson JM, Smith JS. 2009. Genetic identification of factors that modulate ribosomal DNA transcription in Saccharomyces cerevisiae. Genetics 182:105-119.
-
(2009)
Genetics
, vol.182
, pp. 105-119
-
-
Hontz, R.D.1
Niederer, R.O.2
Johnson, J.M.3
Smith, J.S.4
-
19
-
-
84880662679
-
-
Reference deleted.
-
Reference deleted.
-
-
-
-
20
-
-
34147208227
-
Regulation of rRNA synthesis by TATA-binding protein-associated factor Mot1
-
Dasgupta A, Sprouse RO, French S, Aprikian P, Hontz R, Juedes SA, Smith JS, Beyer AL, Auble DT. 2007. Regulation of rRNA synthesis by TATA-binding protein-associated factor Mot1. Mol. Cell. Biol. 27:2886-2896.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 2886-2896
-
-
Dasgupta, A.1
Sprouse, R.O.2
French, S.3
Aprikian, P.4
Hontz, R.5
Juedes, S.A.6
Smith, J.S.7
Beyer, A.L.8
Auble, D.T.9
-
21
-
-
0344629441
-
Global control of histone modification by the anaphase-promoting complex
-
Ramaswamy V, Williams JS, Robinson KM, Sopko RL, Schultz MC. 2003. Global control of histone modification by the anaphase-promoting complex. Mol. Cell. Biol. 23:9136-9149.
-
(2003)
Mol. Cell. Biol
, vol.23
, pp. 9136-9149
-
-
Ramaswamy, V.1
Williams, J.S.2
Robinson, K.M.3
Sopko, R.L.4
Schultz, M.C.5
-
22
-
-
84880675757
-
Current protocols in molecular biology, vol 2
-
New York, NY.
-
Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K. 2000. Current protocols in molecular biology, vol 2. John Wiley & Sons, Inc, New York, NY.
-
(2000)
John Wiley & Sons, Inc
-
-
Ausubel, F.M.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Seidman, J.G.5
Smith, J.A.6
Struhl, K.7
-
23
-
-
55449124522
-
Transcription of multiple yeast ribosomal DNA genes requires targeting of UAF to the promoter by Uaf30
-
Hontz RD, French SL, Oakes ML, Tongaonkar P, Nomura M, Beyer AL, Smith JS. 2008. Transcription of multiple yeast ribosomal DNA genes requires targeting of UAF to the promoter by Uaf30. Mol. Cell. Biol. 28: 6709-6719.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 6709-6719
-
-
Hontz, R.D.1
French, S.L.2
Oakes, M.L.3
Tongaonkar, P.4
Nomura, M.5
Beyer, A.L.6
Smith, J.S.7
-
24
-
-
0026099833
-
Labeling of RNA and phosphoproteins in Saccharomyces cerevisiae
-
Warner JR. 1991. Labeling of RNA and phosphoproteins in Saccharomyces cerevisiae. Methods Enzymol. 194:423-428.
-
(1991)
Methods Enzymol
, vol.194
, pp. 423-428
-
-
Warner, J.R.1
-
25
-
-
60549089376
-
The Paf1 complex is required for efficient transcription elongation by RNA polymerase I
-
U. S. A.
-
Zhang Y, Sikes ML, Beyer AL, Schneider DA. 2009. The Paf1 complex is required for efficient transcription elongation by RNA polymerase I. Proc. Natl. Acad. Sci. U. S. A. 106:2153-2158.
-
(2009)
Proc. Natl. Acad. Sci.
, vol.106
, pp. 2153-2158
-
-
Zhang, Y.1
Sikes, M.L.2
Beyer, A.L.3
Schneider, D.A.4
-
26
-
-
0033598942
-
An enzymatic activity in the yeast Sir2 protein that is essential for gene silencing
-
Tanny JC, Dowd GJ, Huang J, Hilz H, Moazed D. 1999. An enzymatic activity in the yeast Sir2 protein that is essential for gene silencing. Cell 99:735-745.
-
(1999)
Cell
, vol.99
, pp. 735-745
-
-
Tanny, J.C.1
Dowd, G.J.2
Huang, J.3
Hilz, H.4
Moazed, D.5
-
27
-
-
60349120024
-
Electron microscope visualization of RNA transcription and processing in Saccharomyces cerevisiae by Miller chromatin spreading
-
Osheim YN, French SL, Sikes ML, Beyer AL. 2009. Electron microscope visualization of RNA transcription and processing in Saccharomyces cerevisiae by Miller chromatin spreading. Methods Mol. Biol. 464:55-69.
-
(2009)
Methods Mol. Biol
, vol.464
, pp. 55-69
-
-
Osheim, Y.N.1
French, S.L.2
Sikes, M.L.3
Beyer, A.L.4
-
28
-
-
0029112540
-
Transcription in the yeast rRNA gene locus: distribution of the active gene copies and chromatin structure of their flanking regulatory sequences
-
Dammann R, Lucchini R, Koller T, Sogo JM. 1995. Transcription in the yeast rRNA gene locus: distribution of the active gene copies and chromatin structure of their flanking regulatory sequences. Mol. Cell. Biol. 15: 5294-5303.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 5294-5303
-
-
Dammann, R.1
Lucchini, R.2
Koller, T.3
Sogo, J.M.4
-
29
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi JL, Iyer VR, Brown PO. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278:680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
30
-
-
27744471474
-
Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex
-
Carrozza MJ, Florens L, Swanson SK, Shia WJ, Anderson S, Yates J, Washburn MP, Workman JL. 2005. Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex. Biochim. Biophys. Acta 1731:77-87.
-
(2005)
Biochim. Biophys. Acta
, vol.1731
, pp. 77-87
-
-
Carrozza, M.J.1
Florens, L.2
Swanson, S.K.3
Shia, W.J.4
Anderson, S.5
Yates, J.6
Washburn, M.P.7
Workman, J.L.8
-
31
-
-
34249099730
-
Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin
-
Li B, Gogol M, Carey M, Lee D, Seidel C, Workman JL. 2007. Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin. Science 316:1050-1054.
-
(2007)
Science
, vol.316
, pp. 1050-1054
-
-
Li, B.1
Gogol, M.2
Carey, M.3
Lee, D.4
Seidel, C.5
Workman, J.L.6
-
32
-
-
27744587302
-
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
-
Keogh MC, Kurdistani SK, Morris SA, Ahn SH, Podolny V, Collins SR, Schuldiner M, Chin K, Punna T, Thompson NJ, Boone C, Emili A, Weissman JS, Hughes TR, Strahl BD, Grunstein M, Greenblatt JF, Buratowski S, Krogan NJ. 2005. Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell 123:593-605.
-
(2005)
Cell
, vol.123
, pp. 593-605
-
-
Keogh, M.C.1
Kurdistani, S.K.2
Morris, S.A.3
Ahn, S.H.4
Podolny, V.5
Collins, S.R.6
Schuldiner, M.7
Chin, K.8
Punna, T.9
Thompson, N.J.10
Boone, C.11
Emili, A.12
Weissman, J.S.13
Hughes, T.R.14
Strahl, B.D.15
Grunstein, M.16
Greenblatt, J.F.17
Buratowski, S.18
Krogan, N.J.19
-
33
-
-
0037107455
-
Hmo1, an HMG-box protein, belongs to the yeast ribosomal DNA transcription system
-
Gadal O, Labarre S, Boschiero C, Thuriaux P. 2002. Hmo1, an HMG-box protein, belongs to the yeast ribosomal DNA transcription system. EMBO J. 21:5498-5507.
-
(2002)
EMBO J
, vol.21
, pp. 5498-5507
-
-
Gadal, O.1
Labarre, S.2
Boschiero, C.3
Thuriaux, P.4
-
34
-
-
36048959205
-
Hmo1 is required for TOR-dependent regulation of ribosomal protein gene transcription
-
Berger AB, Decourty L, Badis G, Nehrbass U, Jacquier A, Gadal O. 2007. Hmo1 is required for TOR-dependent regulation of ribosomal protein gene transcription. Mol. Cell. Biol. 27:8015-8026.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 8015-8026
-
-
Berger, A.B.1
Decourty, L.2
Badis, G.3
Nehrbass, U.4
Jacquier, A.5
Gadal, O.6
-
35
-
-
0032915376
-
A genetic screen for ribosomal DNA silencing defects identifies multiple DNA replication and chromatin-modulating factors
-
Smith JS, Caputo E, Boeke JD. 1999. A genetic screen for ribosomal DNA silencing defects identifies multiple DNA replication and chromatin-modulating factors. Mol. Cell. Biol. 19:3184-3197.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 3184-3197
-
-
Smith, J.S.1
Caputo, E.2
Boeke, J.D.3
-
36
-
-
0032814843
-
A general requirement for the Sin3-Rpd3 histone deacetylase complex in regulating silencing in Saccharomyces cerevisiae
-
Sun Z-W, Hampsey M. 1999. A general requirement for the Sin3-Rpd3 histone deacetylase complex in regulating silencing in Saccharomyces cerevisiae. Genetics 152:921-932.
-
(1999)
Genetics
, vol.152
, pp. 921-932
-
-
Sun, Z.W.1
Hampsey, M.2
-
37
-
-
84855691295
-
The Rpd3 core complex is a chromatin stabilization module
-
Chen XF, Kuryan B, Kitada T, Tran N, Li JY, Kurdistani S, Grunstein M, Li B, Carey M. 2012. The Rpd3 core complex is a chromatin stabilization module. Curr. Biol. 22:56-63.
-
(2012)
Curr. Biol.
, vol.22
, pp. 56-63
-
-
Chen, X.F.1
Kuryan, B.2
Kitada, T.3
Tran, N.4
Li, J.Y.5
Kurdistani, S.6
Grunstein, M.7
Li, B.8
Carey, M.9
-
38
-
-
0035027953
-
A bipartite yeast SSRP1 analog comprised of Pob3 and Nhp6 proteins modulates transcription
-
Brewster NK, Johnston GC, Singer RA. 2001. A bipartite yeast SSRP1 analog comprised of Pob3 and Nhp6 proteins modulates transcription. Mol. Cell. Biol. 21:3491-3502.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 3491-3502
-
-
Brewster, N.K.1
Johnston, G.C.2
Singer, R.A.3
-
39
-
-
0035796454
-
Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleo-some-binding factor SPN
-
Formosa T, Eriksson P, Wittmeyer J, Ginn J, Yu Y, Stillman DJ. 2001. Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleo-some-binding factor SPN. EMBO J. 20:3506-3517.
-
(2001)
EMBO J
, vol.20
, pp. 3506-3517
-
-
Formosa, T.1
Eriksson, P.2
Wittmeyer, J.3
Ginn, J.4
Yu, Y.5
Stillman, D.J.6
-
40
-
-
65449135496
-
FACT facilitates chromatin transcription by RNA polymerases I and III
-
Birch JL, Tan BC, Panov KI, Panova TB, Andersen JS, Owen-Hughes TA, Russell J, Lee SC, Zomerdijk JC. 2009. FACT facilitates chromatin transcription by RNA polymerases I and III. EMBO J. 28:854-865.
-
(2009)
EMBO J
, vol.28
, pp. 854-865
-
-
Birch, J.L.1
Tan, B.C.2
Panov, K.I.3
Panova, T.B.4
Andersen, J.S.5
Owen-Hughes, T.A.6
Russell, J.7
Lee, S.C.8
Zomerdijk, J.C.9
-
41
-
-
0025942523
-
Mutations in SPT16/CDC68 suppress cis- and trans-acting mutations that affect promoter function in Saccharomyces cerevisiae
-
Malone EA, Clark CD, Chiang A, Winston F. 1991. Mutations in SPT16/CDC68 suppress cis- and trans-acting mutations that affect promoter function in Saccharomyces cerevisiae. Mol. Cell. Biol. 11:5710-5717.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 5710-5717
-
-
Malone, E.A.1
Clark, C.D.2
Chiang, A.3
Winston, F.4
-
42
-
-
0017947299
-
Changes of nucleosome frequency in nucleolar and non-nucleolar chromatin as a function of transcription: an electron microscopic study
-
Scheer U. 1978. Changes of nucleosome frequency in nucleolar and non-nucleolar chromatin as a function of transcription: an electron microscopic study. Cell 13:535-549.
-
(1978)
Cell
, vol.13
, pp. 535-549
-
-
Scheer, U.1
-
43
-
-
33748053333
-
RNA polymerase II elongation factors Spt4p and Spt5p play roles in transcription elongation by RNA polymerase I and rRNA processing
-
U. S. A.
-
Schneider DA, French SL, Osheim YN, Bailey AO, Vu L, Dodd J, Yates JR, Beyer AL, Nomura M. 2006. RNA polymerase II elongation factors Spt4p and Spt5p play roles in transcription elongation by RNA polymerase I and rRNA processing. Proc. Natl. Acad. Sci. U. S. A. 103:12707-12712.
-
(2006)
Proc. Natl. Acad. Sci
, vol.103
, pp. 12707-12712
-
-
Schneider, D.A.1
French, S.L.2
Osheim, Y.N.3
Bailey, A.O.4
Vu, L.5
Dodd, J.6
Yates, J.R.7
Beyer, A.L.8
Nomura, M.9
-
44
-
-
33846946112
-
RNA polymerase I in yeast transcribes dynamic nucleosomal rDNA
-
Jones HS, Kawauchi J, Braglia P, Alen CM, Kent NA, Proudfoot NJ. 2007. RNA polymerase I in yeast transcribes dynamic nucleosomal rDNA. Nat. Struct. Mol. Biol. 14:123-130.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 123-130
-
-
Jones, H.S.1
Kawauchi, J.2
Braglia, P.3
Alen, C.M.4
Kent, N.A.5
Proudfoot, N.J.6
-
45
-
-
0032535478
-
Expansion and contraction of ribosomal DNA repeats in Saccharomyces cerevisiae: requirement of replication fork blocking (Fob1) protein and the role of RNA polymerase I
-
Kobayashi T, Heck DJ, Nomura M, Horiuchi T. 1998. Expansion and contraction of ribosomal DNA repeats in Saccharomyces cerevisiae: requirement of replication fork blocking (Fob1) protein and the role of RNA polymerase I. Genes Dev. 12:3821-3830.
-
(1998)
Genes Dev
, vol.12
, pp. 3821-3830
-
-
Kobayashi, T.1
Heck, D.J.2
Nomura, M.3
Horiuchi, T.4
-
46
-
-
0042822279
-
Association of the RENT complex with non-transcribed and coding regions of rDNA and a regional requirement for the replication fork block protein Fob1 in rDNA silencing
-
Huang J, Moazed D. 2003. Association of the RENT complex with non-transcribed and coding regions of rDNA and a regional requirement for the replication fork block protein Fob1 in rDNA silencing. Genes Dev. 17:2162-2176.
-
(2003)
Genes Dev
, vol.17
, pp. 2162-2176
-
-
Huang, J.1
Moazed, D.2
-
47
-
-
0031044789
-
Transcriptional silencing of Ty1 elements in the RDN1 locus of yeast
-
Bryk M, Banerjee M, Murphy M, Knudsen KE, Garfinkel DJ, Curcio MJ. 1997. Transcriptional silencing of Ty1 elements in the RDN1 locus of yeast. Genes Dev. 11:255-269.
-
(1997)
Genes Dev
, vol.11
, pp. 255-269
-
-
Bryk, M.1
Banerjee, M.2
Murphy, M.3
Knudsen, K.E.4
Garfinkel, D.J.5
Curcio, M.J.6
-
48
-
-
0030831573
-
Direct evidence for SIR2 modulation of chromatin structure in yeast rDNA
-
Fritze CE, Verschueren K, Strich R, Esposito RE. 1997. Direct evidence for SIR2 modulation of chromatin structure in yeast rDNA. EMBO J. 16:6495-6509.
-
(1997)
EMBO J
, vol.16
, pp. 6495-6509
-
-
Fritze, C.E.1
Verschueren, K.2
Strich, R.3
Esposito, R.E.4
-
49
-
-
0031056907
-
An unusual form of transcriptional silencing in yeast ribosomal DNA
-
Smith JS, Boeke JD. 1997. An unusual form of transcriptional silencing in yeast ribosomal DNA. Genes Dev. 11:241-254.
-
(1997)
Genes Dev
, vol.11
, pp. 241-254
-
-
Smith, J.S.1
Boeke, J.D.2
-
50
-
-
8444245244
-
Global nucleosome occupancy in yeast
-
doi:10.1186/gb-2004-5-9-r62.
-
Bernstein BE, Liu CL, Humphrey EL, Perlstein EO, Schreiber SL. 2004. Global nucleosome occupancy in yeast. Genome Biol. 5:R62. doi:10.1186/gb-2004-5-9-r62.
-
(2004)
Genome Biol
, vol.5
-
-
Bernstein, B.E.1
Liu, C.L.2
Humphrey, E.L.3
Perlstein, E.O.4
Schreiber, S.L.5
-
51
-
-
3543023310
-
Evidence for nucleosome depletion at active regulatory regions genome-wide
-
Lee CK, Shibata Y, Rao B, Strahl BD, Lieb JD. 2004. Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat. Genet. 36:900-905.
-
(2004)
Nat. Genet.
, vol.36
, pp. 900-905
-
-
Lee, C.K.1
Shibata, Y.2
Rao, B.3
Strahl, B.D.4
Lieb, J.D.5
-
52
-
-
84861419777
-
The chromatin remodeling complex NuRD establishes the poised state of rRNA genes characterized by bivalent histone modifications and altered nucleosome positions
-
U. S. A.
-
Xie W, Ling T, Zhou Y, Feng W, Zhu Q, Stunnenberg HG, Grummt I, Tao W. 2012. The chromatin remodeling complex NuRD establishes the poised state of rRNA genes characterized by bivalent histone modifications and altered nucleosome positions. Proc. Natl. Acad. Sci. U. S. A. 109:8161-8166.
-
(2012)
Proc. Natl. Acad. Sci.
, vol.109
, pp. 8161-8166
-
-
Xie, W.1
Ling, T.2
Zhou, Y.3
Feng, W.4
Zhu, Q.5
Stunnenberg, H.G.6
Grummt, I.7
Tao, W.8
-
53
-
-
0032560117
-
Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3
-
Rundlett SE, Carmen AA, Suka N, Turner BM, Grunstein M. 1998. Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3. Nature 392:831-835.
-
(1998)
Nature
, vol.392
, pp. 831-835
-
-
Rundlett, S.E.1
Carmen, A.A.2
Suka, N.3
Turner, B.M.4
Grunstein, M.5
-
54
-
-
33847070442
-
The role of chromatin during transcription
-
Li B, Carey M, Workman JL. 2007. The role of chromatin during transcription. Cell 128:707-719.
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
55
-
-
78449255017
-
DSIF and RNA polymerase II CTD phosphorylation coordinate the recruitment of Rpd3S to actively transcribed genes
-
doi:10.1371/journal.pgen.1001173.
-
Drouin S, Laramee L, Jacques PE, Forest A, Bergeron M, Robert F. 2010. DSIF and RNA polymerase II CTD phosphorylation coordinate the recruitment of Rpd3S to actively transcribed genes. PLoS Genet. 6:e1001173. doi:10.1371/journal.pgen.1001173.
-
(2010)
PLoS Genet
, vol.6
-
-
Drouin, S.1
Laramee, L.2
Jacques, P.E.3
Forest, A.4
Bergeron, M.5
Robert, F.6
-
56
-
-
47049102833
-
Different genetic functions for the Rpd3(L) and Rpd3(S) complexes suggest competition between NuA4 and Rpd3(S)
-
Biswas D, Takahata S, Stillman DJ. 2008. Different genetic functions for the Rpd3(L) and Rpd3(S) complexes suggest competition between NuA4 and Rpd3(S). Mol. Cell. Biol. 28:4445-4458.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 4445-4458
-
-
Biswas, D.1
Takahata, S.2
Stillman, D.J.3
-
57
-
-
0345305803
-
Chromatin-mediated regulation of nucleolar structure and RNA Pol I localization by TOR
-
Tsang CK, Bertram PG, Ai W, Drenan R, Zheng XF. 2003. Chromatin-mediated regulation of nucleolar structure and RNA Pol I localization by TOR. EMBO J. 22:6045-6056.
-
(2003)
EMBO J
, vol.22
, pp. 6045-6056
-
-
Tsang, C.K.1
Bertram, P.G.2
Ai, W.3
Drenan, R.4
Zheng, X.F.5
-
58
-
-
0029805633
-
The histone deacetylase RPD3 counteracts genomic silencing in Drosophila and yeast
-
De Rubertis F, Kadosh D, Henchoz S, Pauli D, Reuter G, Struhl K, Spierer P. 1996. The histone deacetylase RPD3 counteracts genomic silencing in Drosophila and yeast. Nature 384:589-591.
-
(1996)
Nature
, vol.384
, pp. 589-591
-
-
De Rubertis, F.1
Kadosh, D.2
Henchoz, S.3
Pauli, D.4
Reuter, G.5
Struhl, K.6
Spierer, P.7
-
59
-
-
0029856225
-
HDA1 and RPD3 are members of distinct yeast his-tone deacetylase complexes that regulate silencing and transcription
-
U. S. A.
-
Rundlett SE, Carmen AA, Kobayashi R, Bavykin S, Turner BM, Grunstein M. 1996. HDA1 and RPD3 are members of distinct yeast his-tone deacetylase complexes that regulate silencing and transcription. Proc. Natl. Acad. Sci. U. S. A. 93:14503-14508.
-
(1996)
Proc. Natl. Acad. Sci
, vol.93
, pp. 14503-14508
-
-
Rundlett, S.E.1
Carmen, A.A.2
Kobayashi, R.3
Bavykin, S.4
Turner, B.M.5
Grunstein, M.6
-
60
-
-
0030465738
-
Evidence that the transcriptional regulators SIN3 and RPD3, and a novel gene (SDS3) with similar functions, are involved in transcriptional silencing in S. cerevisiae
-
Vannier D, Balderes D, Shore D. 1996. Evidence that the transcriptional regulators SIN3 and RPD3, and a novel gene (SDS3) with similar functions, are involved in transcriptional silencing in S. cerevisiae. Genetics 144:1343-1353.
-
(1996)
Genetics
, vol.144
, pp. 1343-1353
-
-
Vannier, D.1
Balderes, D.2
Shore, D.3
-
61
-
-
77950384576
-
Rpd3-dependent boundary formation at telomeres by removal of Sir2 substrate
-
U. S. A.
-
Ehrentraut S, Weber JM, Dybowski JN, Hoffmann D, Ehrenhofer-Murray AE. 2010. Rpd3-dependent boundary formation at telomeres by removal of Sir2 substrate. Proc. Natl. Acad. Sci. U. S. A. 107:5522-5527.
-
(2010)
Proc. Natl. Acad. Sci.
, vol.107
, pp. 5522-5527
-
-
Ehrentraut, S.1
Weber, J.M.2
Dybowski, J.N.3
Hoffmann, D.4
Ehrenhofer-Murray, A.E.5
-
62
-
-
0033513543
-
Transcription factor UAF, expansion and contraction of ribosomal DNA (rDNA) repeats, and RNA polymerase switch in transcription of yeast rDNA
-
Oakes M, Siddiqi I, Vu L, Aris J, Nomura M. 1999. Transcription factor UAF, expansion and contraction of ribosomal DNA (rDNA) repeats, and RNA polymerase switch in transcription of yeast rDNA. Mol. Cell. Biol. 19:8559-8569.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 8559-8569
-
-
Oakes, M.1
Siddiqi, I.2
Vu, L.3
Aris, J.4
Nomura, M.5
-
63
-
-
67649882797
-
Histone deacetylase Rpd3 antagonizes Sir2-dependent silent chromatin propagation
-
Zhou J, Zhou BO, Lenzmeier BA, Zhou JQ. 2009. Histone deacetylase Rpd3 antagonizes Sir2-dependent silent chromatin propagation. Nucleic Acids Res. 37:3699-3713.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3699-3713
-
-
Zhou, J.1
Zhou, B.O.2
Lenzmeier, B.A.3
Zhou, J.Q.4
-
64
-
-
0032498273
-
FACT, a factor that facilitates transcript elongation through nucleosomes
-
Orphanides G, LeRoy G, Chang CH, Luse DS, Reinberg D. 1998. FACT, a factor that facilitates transcript elongation through nucleosomes. Cell 92:105-116.
-
(1998)
Cell
, vol.92
, pp. 105-116
-
-
Orphanides, G.1
LeRoy, G.2
Chang, C.H.3
Luse, D.S.4
Reinberg, D.5
-
65
-
-
0041828954
-
FACT facilitates transcription-dependent nucleo-some alteration
-
Belotserkovskaya R, Oh S, Bondarenko VA, Orphanides G, Studitsky VM, Reinberg D. 2003. FACT facilitates transcription-dependent nucleo-some alteration. Science 301:1090-1093.
-
(2003)
Science
, vol.301
, pp. 1090-1093
-
-
Belotserkovskaya, R.1
Oh, S.2
Bondarenko, V.A.3
Orphanides, G.4
Studitsky, V.M.5
Reinberg, D.6
-
66
-
-
0033566129
-
The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins
-
Orphanides G, Wu WH, Lane WS, Hampsey M, Reinberg D. 1999. The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins. Nature 400:284-288.
-
(1999)
Nature
, vol.400
, pp. 284-288
-
-
Orphanides, G.1
Wu, W.H.2
Lane, W.S.3
Hampsey, M.4
Reinberg, D.5
-
67
-
-
84857119549
-
The role of FACT in making and breaking nucleosomes
-
Formosa T. 2012. The role of FACT in making and breaking nucleosomes. Biochim. Biophys. Acta 1819:247-255.
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 247-255
-
-
Formosa, T.1
-
68
-
-
0042830962
-
Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo
-
Saunders A, Werner J, Andrulis ED, Nakayama T, Hirose S, Reinberg D, Lis JT. 2003. Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo. Science 301:1094-1096.
-
(2003)
Science
, vol.301
, pp. 1094-1096
-
-
Saunders, A.1
Werner, J.2
Andrulis, E.D.3
Nakayama, T.4
Hirose, S.5
Reinberg, D.6
Lis, J.T.7
-
69
-
-
68349148027
-
Histone chaperone Spt16 promotes redeposition of the original H3-H4 histones evicted by elongating RNA polymerase
-
Jamai A, Puglisi A, Strubin M. 2009. Histone chaperone Spt16 promotes redeposition of the original H3-H4 histones evicted by elongating RNA polymerase. Mol. Cell 35:377-383.
-
(2009)
Mol. Cell
, vol.35
, pp. 377-383
-
-
Jamai, A.1
Puglisi, A.2
Strubin, M.3
-
70
-
-
68349131435
-
yFACT induces global accessibility of nucleosomal DNA without H2A-H2B displacement
-
Xin H, Takahata S, Blanksma M, McCullough L, Stillman DJ, Formosa T. 2009. yFACT induces global accessibility of nucleosomal DNA without H2A-H2B displacement. Mol. Cell 35:365-376.
-
(2009)
Mol. Cell
, vol.35
, pp. 365-376
-
-
Xin, H.1
Takahata, S.2
Blanksma, M.3
McCullough, L.4
Stillman, D.J.5
Formosa, T.6
|