메뉴 건너뛰기




Volumn 26, Issue 1, 2013, Pages 73-85

Balanced nucleocytosolic partitioning defines a spatial network to coordinate circadian physiology in plants

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CIRCADIAN RHYTHM; GENE; GIGANTEA; INTRACELLULAR SPACE; LHY GENE; MATHEMATICAL MODEL; NOISE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

EID: 84880514303     PISSN: 15345807     EISSN: 18781551     Source Type: Journal    
DOI: 10.1016/j.devcel.2013.06.006     Document Type: Article
Times cited : (28)

References (52)
  • 1
    • 0035800467 scopus 로고    scopus 로고
    • Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock
    • Alabadí D., Oyama T., Yanovsky M.J., Harmon F.G., Más P., Kay S.A. Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science 2001, 293:880-883.
    • (2001) Science , vol.293 , pp. 880-883
    • Alabadí, D.1    Oyama, T.2    Yanovsky, M.J.3    Harmon, F.G.4    Más, P.5    Kay, S.A.6
  • 2
    • 34249079154 scopus 로고    scopus 로고
    • Network motifs: theory and experimental approaches
    • Alon U. Network motifs: theory and experimental approaches. Nat. Rev. Genet. 2007, 8:450-461.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 450-461
    • Alon, U.1
  • 3
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad B.M., Irizarry R.A., Astrand M., Speed T.P. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19:185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 4
    • 24944568790 scopus 로고    scopus 로고
    • Nuclear-cytoplasmic partitioning of phosphatase and tensin homologue deleted on chromosome 10 (PTEN) differentially regulates the cell cycle and apoptosis
    • Chung J.H., Eng C. Nuclear-cytoplasmic partitioning of phosphatase and tensin homologue deleted on chromosome 10 (PTEN) differentially regulates the cell cycle and apoptosis. Cancer Res. 2005, 65:8096-8100.
    • (2005) Cancer Res. , vol.65 , pp. 8096-8100
    • Chung, J.H.1    Eng, C.2
  • 5
    • 51749110466 scopus 로고    scopus 로고
    • Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development
    • Covington M.F., Maloof J.N., Straume M., Kay S.A., Harmer S.L. Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development. Genome Biol. 2008, 9:R130.
    • (2008) Genome Biol. , vol.9
    • Covington, M.F.1    Maloof, J.N.2    Straume, M.3    Kay, S.A.4    Harmer, S.L.5
  • 8
    • 0033065554 scopus 로고    scopus 로고
    • Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis
    • Dowson-Day M.J., Millar A.J. Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis. Plant J. 1999, 17:63-71.
    • (1999) Plant J. , vol.17 , pp. 63-71
    • Dowson-Day, M.J.1    Millar, A.J.2
  • 10
    • 67650473072 scopus 로고    scopus 로고
    • Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response
    • Fornara F., Panigrahi K.C., Gissot L., Sauerbrunn N., Rühl M., Jarillo J.A., Coupland G. Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response. Dev. Cell 2009, 17:75-86.
    • (2009) Dev. Cell , vol.17 , pp. 75-86
    • Fornara, F.1    Panigrahi, K.C.2    Gissot, L.3    Sauerbrunn, N.4    Rühl, M.5    Jarillo, J.A.6    Coupland, G.7
  • 11
    • 0033198884 scopus 로고    scopus 로고
    • GIGANTEA: a circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains
    • Fowler S., Lee K., Onouchi H., Samach A., Richardson K., Morris B., Coupland G., Putterill J. GIGANTEA: a circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains. EMBO J. 1999, 18:4679-4688.
    • (1999) EMBO J. , vol.18 , pp. 4679-4688
    • Fowler, S.1    Lee, K.2    Onouchi, H.3    Samach, A.4    Richardson, K.5    Morris, B.6    Coupland, G.7    Putterill, J.8
  • 13
    • 0027012738 scopus 로고
    • A versatile binary vector system with a T-DNA organisational structure conducive to efficient integration of cloned DNA into the plant genome
    • Gleave A.P. A versatile binary vector system with a T-DNA organisational structure conducive to efficient integration of cloned DNA into the plant genome. Plant Mol. Biol. 1992, 20:1203-1207.
    • (1992) Plant Mol. Biol. , vol.20 , pp. 1203-1207
    • Gleave, A.P.1
  • 14
    • 72349087272 scopus 로고    scopus 로고
    • Analysis of a post-translational steroid induction system for GIGANTEA in Arabidopsis
    • Günl M., Liew E.F., David K., Putterill J. Analysis of a post-translational steroid induction system for GIGANTEA in Arabidopsis. BMC Plant Biol. 2009, 9:141.
    • (2009) BMC Plant Biol. , vol.9 , pp. 141
    • Günl, M.1    Liew, E.F.2    David, K.3    Putterill, J.4
  • 15
    • 0028500170 scopus 로고
    • The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation
    • Hajdukiewicz P., Svab Z., Maliga P. The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Mol. Biol. 1994, 25:989-994.
    • (1994) Plant Mol. Biol. , vol.25 , pp. 989-994
    • Hajdukiewicz, P.1    Svab, Z.2    Maliga, P.3
  • 16
    • 66449087281 scopus 로고    scopus 로고
    • The circadian system in higher plants
    • Harmer S.L. The circadian system in higher plants. Annu. Rev. Plant Biol. 2009, 60:357-377.
    • (2009) Annu. Rev. Plant Biol. , vol.60 , pp. 357-377
    • Harmer, S.L.1
  • 18
    • 0034630158 scopus 로고    scopus 로고
    • A comparison of the activity, sequence specificity, and CRM1-dependence of different nuclear export signals
    • Henderson B.R., Eleftheriou A. A comparison of the activity, sequence specificity, and CRM1-dependence of different nuclear export signals. Exp. Cell Res. 2000, 256:213-224.
    • (2000) Exp. Cell Res. , vol.256 , pp. 213-224
    • Henderson, B.R.1    Eleftheriou, A.2
  • 21
    • 0021716406 scopus 로고
    • A short amino acid sequence able to specify nuclear location
    • Kalderon D., Roberts B.L., Richardson W.D., Smith A.E. A short amino acid sequence able to specify nuclear location. Cell 1984, 39:499-509.
    • (1984) Cell , vol.39 , pp. 499-509
    • Kalderon, D.1    Roberts, B.L.2    Richardson, W.D.3    Smith, A.E.4
  • 22
    • 52649087274 scopus 로고    scopus 로고
    • Modelling and analysis of gene regulatory networks
    • Karlebach G., Shamir R. Modelling and analysis of gene regulatory networks. Nat. Rev. Mol. Cell Biol. 2008, 9:770-780.
    • (2008) Nat. Rev. Mol. Cell Biol. , vol.9 , pp. 770-780
    • Karlebach, G.1    Shamir, R.2
  • 23
    • 0037447277 scopus 로고    scopus 로고
    • Circadian phase-specific degradation of the F-box protein ZTL is mediated by the proteasome
    • Kim W.Y., Geng R., Somers D.E. Circadian phase-specific degradation of the F-box protein ZTL is mediated by the proteasome. Proc. Natl. Acad. Sci. USA 2003, 100:4933-4938.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 4933-4938
    • Kim, W.Y.1    Geng, R.2    Somers, D.E.3
  • 25
    • 48249090527 scopus 로고    scopus 로고
    • FIONA1 is essential for regulating period length in the Arabidopsis circadian clock
    • Kim J., Kim Y., Yeom M., Kim J.H., Nam H.G. FIONA1 is essential for regulating period length in the Arabidopsis circadian clock. Plant Cell 2008, 20:307-319.
    • (2008) Plant Cell , vol.20 , pp. 307-319
    • Kim, J.1    Kim, Y.2    Yeom, M.3    Kim, J.H.4    Nam, H.G.5
  • 26
    • 34548832558 scopus 로고    scopus 로고
    • NgLOC: an n-gram-based Bayesian methodfor estimating the subcellular proteomes of eukaryotes
    • King B.R., Guda C. ngLOC: an n-gram-based Bayesian methodfor estimating the subcellular proteomes of eukaryotes. Genome Biol. 2007, 8:R68.
    • (2007) Genome Biol. , vol.8
    • King, B.R.1    Guda, C.2
  • 27
    • 55849139827 scopus 로고    scopus 로고
    • Testing time: can ethanol-induced pulses of proposed oscillator components phase shift rhythms in Arabidopsis?
    • Knowles S.M., Lu S.X., Tobin E.M. Testing time: can ethanol-induced pulses of proposed oscillator components phase shift rhythms in Arabidopsis?. J.Biol. Rhythms 2008, 23:463-471.
    • (2008) J.Biol. Rhythms , vol.23 , pp. 463-471
    • Knowles, S.M.1    Lu, S.X.2    Tobin, E.M.3
  • 28
    • 1042278627 scopus 로고    scopus 로고
    • Ecdysone agonist-inducible expression of a coat protein gene from tobacco mosaic virus confers viral resistance in transgenic Arabidopsis
    • Koo J.C., Asurmendi S., Bick J., Woodford-Thomas T., Beachy R.N. Ecdysone agonist-inducible expression of a coat protein gene from tobacco mosaic virus confers viral resistance in transgenic Arabidopsis. Plant J. 2004, 37:439-448.
    • (2004) Plant J. , vol.37 , pp. 439-448
    • Koo, J.C.1    Asurmendi, S.2    Bick, J.3    Woodford-Thomas, T.4    Beachy, R.N.5
  • 29
    • 77950571596 scopus 로고    scopus 로고
    • Direct transfer of alpha-synuclein from neuron to astroglia causes inflammatory responses in synucleinopathies
    • Lee H.J., Suk J.E., Patrick C., Bae E.J., Cho J.H., Rho S., Hwang D., Masliah E., Lee S.J. Direct transfer of alpha-synuclein from neuron to astroglia causes inflammatory responses in synucleinopathies. J.Biol. Chem. 2010, 285:9262-9272.
    • (2010) J.Biol. Chem. , vol.285 , pp. 9262-9272
    • Lee, H.J.1    Suk, J.E.2    Patrick, C.3    Bae, E.J.4    Cho, J.H.5    Rho, S.6    Hwang, D.7    Masliah, E.8    Lee, S.J.9
  • 30
    • 15244359622 scopus 로고    scopus 로고
    • Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana
    • Locke J.C., Millar A.J., Turner M.S. Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana. J.Theor. Biol. 2005, 234:383-393.
    • (2005) J.Theor. Biol. , vol.234 , pp. 383-393
    • Locke, J.C.1    Millar, A.J.2    Turner, M.S.3
  • 31
    • 68749118345 scopus 로고    scopus 로고
    • Defining network topologies that can achieve biochemical adaptation
    • Ma W., Trusina A., El-Samad H., Lim W.A., Tang C. Defining network topologies that can achieve biochemical adaptation. Cell 2009, 138:760-773.
    • (2009) Cell , vol.138 , pp. 760-773
    • Ma, W.1    Trusina, A.2    El-Samad, H.3    Lim, W.A.4    Tang, C.5
  • 32
    • 0142027814 scopus 로고    scopus 로고
    • Structure and function of the feed-forward loop network motif
    • Mangan S., Alon U. Structure and function of the feed-forward loop network motif. Proc. Natl. Acad. Sci. USA 2003, 100:11980-11985.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 11980-11985
    • Mangan, S.1    Alon, U.2
  • 33
    • 32044462728 scopus 로고    scopus 로고
    • The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli
    • Mangan S., Itzkovitz S., Zaslaver A., Alon U. The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli. J.Mol. Biol. 2006, 356:1073-1081.
    • (2006) J.Mol. Biol. , vol.356 , pp. 1073-1081
    • Mangan, S.1    Itzkovitz, S.2    Zaslaver, A.3    Alon, U.4
  • 34
    • 33846351661 scopus 로고    scopus 로고
    • GIGANTEA acts in blue light signaling and has biochemically separable roles in circadian clock and flowering time regulation
    • Martin-Tryon E.L., Kreps J.A., Harmer S.L. GIGANTEA acts in blue light signaling and has biochemically separable roles in circadian clock and flowering time regulation. Plant Physiol. 2007, 143:473-486.
    • (2007) Plant Physiol. , vol.143 , pp. 473-486
    • Martin-Tryon, E.L.1    Kreps, J.A.2    Harmer, S.L.3
  • 46
    • 1842664361 scopus 로고    scopus 로고
    • It's time to flower: the genetic control of flowering time
    • Putterill J., Laurie R., Macknight R. It's time to flower: the genetic control of flowering time. Bioessays 2004, 26:363-373.
    • (2004) Bioessays , vol.26 , pp. 363-373
    • Putterill, J.1    Laurie, R.2    Macknight, R.3
  • 47
    • 79960990279 scopus 로고    scopus 로고
    • GIGANTEA directly activates Flowering Locus T in Arabidopsis thaliana
    • Sawa M., Kay S.A. GIGANTEA directly activates Flowering Locus T in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 2011, 108:11698-11703.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 11698-11703
    • Sawa, M.1    Kay, S.A.2
  • 48
    • 35348910170 scopus 로고    scopus 로고
    • FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis
    • Sawa M., Nusinow D.A., Kay S.A., Imaizumi T. FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis. Science 2007, 318:261-265.
    • (2007) Science , vol.318 , pp. 261-265
    • Sawa, M.1    Nusinow, D.A.2    Kay, S.A.3    Imaizumi, T.4
  • 49
    • 70849112486 scopus 로고    scopus 로고
    • Cell signaling in space and time: where proteins come together and when they're apart
    • Scott J.D., Pawson T. Cell signaling in space and time: where proteins come together and when they're apart. Science 2009, 326:1220-1224.
    • (2009) Science , vol.326 , pp. 1220-1224
    • Scott, J.D.1    Pawson, T.2
  • 50
    • 0035953691 scopus 로고    scopus 로고
    • CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis
    • Suárez-López P., Wheatley K., Robson F., Onouchi H., Valverde F., Coupland G. CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis. Nature 2001, 410:1116-1120.
    • (2001) Nature , vol.410 , pp. 1116-1120
    • Suárez-López, P.1    Wheatley, K.2    Robson, F.3    Onouchi, H.4    Valverde, F.5    Coupland, G.6
  • 51
    • 36749003871 scopus 로고    scopus 로고
    • Separate functions for nuclear and cytoplasmic cryptochrome 1 during photomorphogenesis of Arabidopsis seedlings
    • Wu G., Spalding E.P. Separate functions for nuclear and cytoplasmic cryptochrome 1 during photomorphogenesis of Arabidopsis seedlings. Proc. Natl. Acad. Sci. USA 2007, 104:18813-18818.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 18813-18818
    • Wu, G.1    Spalding, E.P.2
  • 52
    • 42149083808 scopus 로고    scopus 로고
    • DBMLoc: a Database of proteins with multiple subcellular localizations
    • Zhang S., Xia X., Shen J., Zhou Y., Sun Z. DBMLoc: a Database of proteins with multiple subcellular localizations. BMC Bioinformatics 2008, 9:127.
    • (2008) BMC Bioinformatics , vol.9 , pp. 127
    • Zhang, S.1    Xia, X.2    Shen, J.3    Zhou, Y.4    Sun, Z.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.