-
1
-
-
34249859168
-
Cyanobacterial clock, a stable phase oscillator with negligible intercellular coupling
-
10.1073/pnas.0609315104
-
Amdaoud M. Vallade M. Weiss-Schaber C. Mihalcescu I. Cyanobacterial clock, a stable phase oscillator with negligible intercellular coupling. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:7051-7056. 10.1073/pnas.0609315104, and ",".
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 7051-7056
-
-
Amdaoud, M.1
Vallade, M.2
Weiss-Schaber, C.3
Mihalcescu, I.4
-
2
-
-
0034688220
-
Circadian clocks limited by noise
-
10.1038/35002258
-
Barkai N. Leibler S. Circadian clocks limited by noise. Nature (London) 2000, 403:267-268. 10.1038/35002258, and ",".
-
(2000)
Nature (London)
, vol.403
, pp. 267-268
-
-
Barkai, N.1
Leibler, S.2
-
3
-
-
29244452623
-
Piecewise-linear models of genetic regulatory networks: Equilibria and their stability
-
10.1007/s00285-005-0338-2
-
Casey R. de Jong H. Gouzé J.L. Piecewise-linear models of genetic regulatory networks: Equilibria and their stability. J. Math. Biol. 2006, 52:27-56. 10.1007/s00285-005-0338-2, and ",".
-
(2006)
J. Math. Biol.
, vol.52
, pp. 27-56
-
-
Casey, R.1
de Jong, H.2
Gouzé, J.L.3
-
4
-
-
84879167862
-
Probabilistic approach for predicting periodic orbits in piecewise affine differential models
-
10.1007/s11538-012-9773-6
-
Chaves M. Farcot E. Gouzé J.-L. Probabilistic approach for predicting periodic orbits in piecewise affine differential models. Bull. Math. Biol. 2013, 10.1007/s11538-012-9773-6, and "," DOI:.
-
(2013)
Bull. Math. Biol.
-
-
Chaves, M.1
Farcot, E.2
Gouzé, J.-L.3
-
5
-
-
33746618913
-
Methods of robustness analysis for Boolean models of gene control networks
-
10.1049/ip-syb:20050079
-
Chaves M. Sontag E.D. Albert R. Methods of robustness analysis for Boolean models of gene control networks. IEE Proc. Syst. Biol. 2006, 153(4):154-167. 10.1049/ip-syb:20050079, and ",".
-
(2006)
IEE Proc. Syst. Biol.
, vol.153
, Issue.4
, pp. 154-167
-
-
Chaves, M.1
Sontag, E.D.2
Albert, R.3
-
6
-
-
77955854468
-
Comparing Boolean and piecewise affine differential models for genetic networks
-
10.1007/s10441-010-9097-6
-
Chaves M. Tournier L. Gouzé J.L. Comparing Boolean and piecewise affine differential models for genetic networks. Acta Biotheor. 2010, 58(2):217-232. 10.1007/s10441-010-9097-6, and ",".
-
(2010)
Acta Biotheor.
, vol.58
, Issue.2
, pp. 217-232
-
-
Chaves, M.1
Tournier, L.2
Gouzé, J.L.3
-
7
-
-
0036207347
-
Modeling and simulation of genetic regulatory systems: A literature review
-
10.1089/10665270252833208
-
de Jong H. Modeling and simulation of genetic regulatory systems: A literature review. J. Comput. Biol. 2002, 9:67-103. 10.1089/10665270252833208, ",".
-
(2002)
J. Comput. Biol.
, vol.9
, pp. 67-103
-
-
de Jong, H.1
-
8
-
-
1242333310
-
Qualitative simulation of genetic regulatory networks using piecewise linear models
-
10.1016/j.bulm.2003.08.010
-
de Jong H. Gouzé J.L. Hernandez C. Page M. Sari T. Geiselmann J. Qualitative simulation of genetic regulatory networks using piecewise linear models. Bull. Math. Biol. 2004, 66(2):301-340. 10.1016/j.bulm.2003.08.010, and ",".
-
(2004)
Bull. Math. Biol.
, vol.66
, Issue.2
, pp. 301-340
-
-
de Jong, H.1
Gouzé, J.L.2
Hernandez, C.3
Page, M.4
Sari, T.5
Geiselmann, J.6
-
9
-
-
0033593306
-
Molecular basis for circadian clocks
-
10.1016/S0092-8674(00)80566-8
-
Dunlap J.C. Molecular basis for circadian clocks. Cell 1999, 96:271-290. 10.1016/S0092-8674(00)80566-8, ",".
-
(1999)
Cell
, vol.96
, pp. 271-290
-
-
Dunlap, J.C.1
-
10
-
-
0034404253
-
Combinatorial explosion in model gene networks
-
10.1063/1.1286997
-
Edwards R. Glass L. Combinatorial explosion in model gene networks. Chaos 2000, 10:691-704. 10.1063/1.1286997, and ",".
-
(2000)
Chaos
, vol.10
, pp. 691-704
-
-
Edwards, R.1
Glass, L.2
-
11
-
-
77949885161
-
Periodic solutions of piecewise affine gene network models with non uniform decay rates: The case of a negative feedback loop
-
10.1007/s10441-009-9086-9
-
Farcot E. Gouzé J.L. Periodic solutions of piecewise affine gene network models with non uniform decay rates: The case of a negative feedback loop. Acta Biotheor. 2009, 57:429-455. 10.1007/s10441-009-9086-9, and ",".
-
(2009)
Acta Biotheor.
, vol.57
, pp. 429-455
-
-
Farcot, E.1
Gouzé, J.L.2
-
13
-
-
33749553474
-
Combinatorial and topological methods in nonlinear chemical kinetics
-
10.1063/1.431518
-
Glass L. Combinatorial and topological methods in nonlinear chemical kinetics. J. Chem. Phys. 1975, 63:1325-1335. 10.1063/1.431518, ",".
-
(1975)
J. Chem. Phys.
, vol.63
, pp. 1325-1335
-
-
Glass, L.1
-
14
-
-
0015609281
-
The logical analysis of continuous, nonlinear biochemical control networks
-
10.1016/0022-5193(73)90208-7
-
Glass L. Kauffman S.A. The logical analysis of continuous, nonlinear biochemical control networks. J. Theor. Biol. 1973, 39:103-129. 10.1016/0022-5193(73)90208-7, and ",".
-
(1973)
J. Theor. Biol.
, vol.39
, pp. 103-129
-
-
Glass, L.1
Kauffman, S.A.2
-
15
-
-
0018168876
-
Stable oscillations in mathematical models of biological control systems
-
10.1007/BF02547797
-
Glass L. Pasternak J.S. Stable oscillations in mathematical models of biological control systems. J. Math. Biol. 1978, 6:207-223. 10.1007/BF02547797, and ",".
-
(1978)
J. Math. Biol.
, vol.6
, pp. 207-223
-
-
Glass, L.1
Pasternak, J.S.2
-
17
-
-
1842456940
-
Cyanobacterial circadian clocks-timing is everything
-
10.1038/nrmicro774
-
Golden S.S. Canales S.R. Cyanobacterial circadian clocks-timing is everything. Nat. Rev. Microbiol. 2003, 1:191-199. 10.1038/nrmicro774, and ",".
-
(2003)
Nat. Rev. Microbiol.
, vol.1
, pp. 191-199
-
-
Golden, S.S.1
Canales, S.R.2
-
18
-
-
0036938728
-
A class of piecewise linear differential equations arising in biological models
-
10.1080/1468936021000041681
-
Gouzé J.L. Sari T. A class of piecewise linear differential equations arising in biological models. Dyn. Syst. 2002, 17(4):299-316. 10.1080/1468936021000041681, and ",".
-
(2002)
Dyn. Syst.
, vol.17
, Issue.4
, pp. 299-316
-
-
Gouzé, J.L.1
Sari, T.2
-
19
-
-
35848958822
-
Autonomous synchronization of the circadian kaiC phosphorylation rhythm
-
10.1038/nsmb1312
-
Ito H. Kageyama H. Mutsuda M. Nakajima M. Oyama T. Kondo T. Autonomous synchronization of the circadian kaiC phosphorylation rhythm. Nat. Struct. Mol. Biol. 2007, 14:1084-1088. 10.1038/nsmb1312, and ",".
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 1084-1088
-
-
Ito, H.1
Kageyama, H.2
Mutsuda, M.3
Nakajima, M.4
Oyama, T.5
Kondo, T.6
-
20
-
-
0141731246
-
Entrainment of circadian programs
-
10.1081/CBI-120024211
-
Johnson C.H. Elliot J.A. Foster R. Entrainment of circadian programs. Chronobiol. Int. 2003, 20:741-774. 10.1081/CBI-120024211, and ",".
-
(2003)
Chronobiol. Int.
, vol.20
, pp. 741-774
-
-
Johnson, C.H.1
Elliot, J.A.2
Foster, R.3
-
21
-
-
44849136755
-
Dual kaiC-based oscillations constitute the circadian system of cyanobacteria
-
10.1101/gad.1661808
-
Kitayama Y. Nishiwaki T. Terauchi K. Kondo T. Dual kaiC-based oscillations constitute the circadian system of cyanobacteria. Genes Dev. 2008, 22:1513-1521. 10.1101/gad.1661808, and ",".
-
(2008)
Genes Dev.
, vol.22
, pp. 1513-1521
-
-
Kitayama, Y.1
Nishiwaki, T.2
Terauchi, K.3
Kondo, T.4
-
22
-
-
71349084249
-
The molecular clockwork of a protein-based circadian oscillator
-
10.1016/j.febslet.2009.11.021
-
Markson J.S. O'Shea E.K. The molecular clockwork of a protein-based circadian oscillator. FEBS Lett. 2009, 583:3938-3947. 10.1016/j.febslet.2009.11.021, and ",".
-
(2009)
FEBS Lett.
, vol.583
, pp. 3938-3947
-
-
Markson, J.S.1
O'Shea, E.K.2
-
23
-
-
3042810019
-
Resilient circadian oscillator revealed in individual cyanobacteria
-
10.1038/nature02533
-
Mihalcescu I. Hsing W. Leibler S. Resilient circadian oscillator revealed in individual cyanobacteria. Nature (London) 2004, 430:81-85. 10.1038/nature02533, and ",".
-
(2004)
Nature (London)
, vol.430
, pp. 81-85
-
-
Mihalcescu, I.1
Hsing, W.2
Leibler, S.3
-
24
-
-
77952996508
-
Synchronization of circadian oscillation of phosphorylation level of kaiC in vitro
-
10.1016/j.bpj.2010.02.036
-
Nagai T. Terada T.P. Sasai M. Synchronization of circadian oscillation of phosphorylation level of kaiC in vitro. Biophys. J. 2010, 98:2469-2477. 10.1016/j.bpj.2010.02.036, and ",".
-
(2010)
Biophys. J.
, vol.98
, pp. 2469-2477
-
-
Nagai, T.1
Terada, T.P.2
Sasai, M.3
-
25
-
-
17244373578
-
Resilient circadian oscillator revealed in individual cyanobacteria
-
10.1126/science.1108451
-
Nakajima M. Imai K. Ito H. Nishiwaki T. Murayama Y. Iwasaki H. Oyama T. Kondo T. Resilient circadian oscillator revealed in individual cyanobacteria. Science 2005, 308:414-415. 10.1126/science.1108451, and ",".
-
(2005)
Science
, vol.308
, pp. 414-415
-
-
Nakajima, M.1
Imai, K.2
Ito, H.3
Nishiwaki, T.4
Murayama, Y.5
Iwasaki, H.6
Oyama, T.7
Kondo, T.8
-
26
-
-
34548382214
-
A sequential program of dual phosphorylation of kaiC as a basis for circadian rhythm in cyanobacteria
-
10.1038/sj.emboj.7601832
-
Nishiwaki T. Satomi Y. Kitayama Y. Terauchi K. Kiyohara R. Takao T. Kondo T. A sequential program of dual phosphorylation of kaiC as a basis for circadian rhythm in cyanobacteria. EMBO J. 2007, 26:4029-4037. 10.1038/sj.emboj.7601832, and ",".
-
(2007)
EMBO J.
, vol.26
, pp. 4029-4037
-
-
Nishiwaki, T.1
Satomi, Y.2
Kitayama, Y.3
Terauchi, K.4
Kiyohara, R.5
Takao, T.6
Kondo, T.7
-
27
-
-
79251566511
-
Circadian clocks in human red blood cells
-
10.1038/nature09702
-
O'Neill J.S. Reddy A.B. Circadian clocks in human red blood cells. Nature (London) 2011, 469:498-503. 10.1038/nature09702, and ",".
-
(2011)
Nature (London)
, vol.469
, pp. 498-503
-
-
O'Neill, J.S.1
Reddy, A.B.2
-
28
-
-
84874978669
-
Robust and tunable circadian rhythms from differentially sensitive catalytic domains
-
10.1073/pnas.1212113110
-
Phong C. Markson J.S. Wilhoite C.M. Rust M.J. Robust and tunable circadian rhythms from differentially sensitive catalytic domains. Proc. Natl. Acad. Sci. U.S.A. 2013, 110(3):1124-1129. 10.1073/pnas.1212113110, and ",".
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, Issue.3
, pp. 1124-1129
-
-
Phong, C.1
Markson, J.S.2
Wilhoite, C.M.3
Rust, M.J.4
-
29
-
-
77954703765
-
Coupling of a core post-translational pacemaker to a slave transcription/translation feedback loop in a circadian system
-
10.1371/journal.pbio.1000394
-
Qin X. Byrne M. Xu Y. Mori T. Johnson C.H. Coupling of a core post-translational pacemaker to a slave transcription/translation feedback loop in a circadian system. Plos Biol. 2010, 8:e1000394. 10.1371/journal.pbio.1000394, and ",".
-
(2010)
Plos Biol.
, vol.8
-
-
Qin, X.1
Byrne, M.2
Xu, Y.3
Mori, T.4
Johnson, C.H.5
-
30
-
-
78651453820
-
Light-driven changes in energy metabolism directly entrain the cyanobacterial circadian oscillator
-
10.1126/science.1197243
-
Rust M.J. Golden S.S. OShea E.K. Light-driven changes in energy metabolism directly entrain the cyanobacterial circadian oscillator. Science 2011, 331:220. 10.1126/science.1197243, and ",".
-
(2011)
Science
, vol.331
, pp. 220
-
-
Rust, M.J.1
Golden, S.S.2
OShea, E.K.3
-
31
-
-
37549018348
-
Ordered phosphorylation governs oscillation of a three-protein circadian clock
-
10.1126/science.1148596
-
Rust M.J. Markson J.S. Lane W.S. Fisher D.S. OShea E.K. Ordered phosphorylation governs oscillation of a three-protein circadian clock. Science 2007, 318:809. 10.1126/science.1148596, and ",".
-
(2007)
Science
, vol.318
, pp. 809
-
-
Rust, M.J.1
Markson, J.S.2
Lane, W.S.3
Fisher, D.S.4
OShea, E.K.5
-
32
-
-
0015823097
-
Boolean formalization of genetic control circuits
-
10.1016/0022-5193(73)90247-6
-
Thomas R. Boolean formalization of genetic control circuits. J. Theor. Biol. 1973, 42:563-585. 10.1016/0022-5193(73)90247-6, ",".
-
(1973)
J. Theor. Biol.
, vol.42
, pp. 563-585
-
-
Thomas, R.1
-
34
-
-
12244296161
-
No transcription-translation feedback in circadian rhythm of kaiC phosphorylation
-
10.1126/science.1102540
-
Tomita J. Nakajima M. Kondo T. Iwasaki H. No transcription-translation feedback in circadian rhythm of kaiC phosphorylation. Science 2005, 307:251-254. 10.1126/science.1102540, and ",".
-
(2005)
Science
, vol.307
, pp. 251-254
-
-
Tomita, J.1
Nakajima, M.2
Kondo, T.3
Iwasaki, H.4
-
36
-
-
84867272347
-
Boolean modeling in systems biology: An overview of methodology and applications
-
10.1088/1478-3975/9/5/055001
-
Wang R.S. Saadatpour A. Albert R. Boolean modeling in systems biology: An overview of methodology and applications. Phys. Biol. 2012, 9:055001. 10.1088/1478-3975/9/5/055001, and ",".
-
(2012)
Phys. Biol.
, vol.9
, pp. 055001
-
-
Wang, R.S.1
Saadatpour, A.2
Albert, R.3
-
38
-
-
78651071941
-
Robust circadian clocks from coupled protein-modification and transcription-translation cycles
-
10.1073/pnas.1007613107
-
Zwicker D. Lubensky D.K. ten Wolde P.R. Robust circadian clocks from coupled protein-modification and transcription-translation cycles. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:22540-22545. 10.1073/pnas.1007613107, and ",".
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 22540-22545
-
-
Zwicker, D.1
Lubensky, D.K.2
ten Wolde, P.R.3
|