-
1
-
-
1042291215
-
Structural principles of leucine-rich repeat (LRR) proteins
-
Enkhbayar P, Kamiya M, Osaki M, et al. Structural principles of leucine-rich repeat (LRR) proteins. Proteins. 2004 ; 54: 394-403
-
(2004)
Proteins
, vol.54
, pp. 394-403
-
-
Enkhbayar, P.1
Kamiya, M.2
Osaki, M.3
-
3
-
-
0031902035
-
Leucine-rich repeat glycoproteins of the extracellular matrix
-
Hocking AM, Shinomura T, McQuillan DJ. Leucine-rich repeat glycoproteins of the extracellular matrix. MatrixBiol. 1998 ; 17: 1-19
-
(1998)
MatrixBiol
, vol.17
, pp. 1-19
-
-
Hocking, A.M.1
Shinomura, T.2
McQuillan, D.J.3
-
5
-
-
28844473492
-
Structural analysis of leucine-rich-repeat variants in proteins associated with human diseases
-
Matsushima N, Tachi N, Kuroki Y, et al. Structural analysis of leucine-rich-repeat variants in proteins associated with human diseases. Cell Mol Life Sci. 2005 ; 62: 2771-2791
-
(2005)
Cell Mol Life Sci
, vol.62
, pp. 2771-2791
-
-
Matsushima, N.1
Tachi, N.2
Kuroki, Y.3
-
6
-
-
33846272114
-
Plant NBS-LRR proteins in pathogen sensing and host defense
-
DeYoung BJ, Innes RW. Plant NBS-LRR proteins in pathogen sensing and host defense. Nat Immunol. 2006 ; 7: 1243-1249
-
(2006)
Nat Immunol
, vol.7
, pp. 1243-1249
-
-
Deyoung, B.J.1
Innes, R.W.2
-
7
-
-
0035692811
-
The leucine-rich repeat as a protein recognition motif
-
Kobe B, Kajava AV. The leucine-rich repeat as a protein recognition motif. Curr Opin Struct Biol. 2001 ; 11: 725-732
-
(2001)
Curr Opin Struct Biol
, vol.11
, pp. 725-732
-
-
Kobe, B.1
Kajava, A.V.2
-
8
-
-
77954569181
-
Structural insights into the evolution of the adaptive immune system: The variable lymphocyte receptors of jawless vertebrates
-
Mariuzza RA, Velikovsky CA, Deng L, et al. Structural insights into the evolution of the adaptive immune system: the variable lymphocyte receptors of jawless vertebrates. Biol Chem. 2010 ; 391: 753-760
-
(2010)
Biol Chem
, vol.391
, pp. 753-760
-
-
Mariuzza, R.A.1
Velikovsky, C.A.2
Deng, L.3
-
9
-
-
0037427976
-
TOLL-like receptors linking innate and adaptive immune response
-
Werling D, Jungi TW. TOLL-like receptors linking innate and adaptive immune response. Vet Immunol Immunopathol. 2003 ; 91: 1-12
-
(2003)
Vet Immunol Immunopathol
, vol.91
, pp. 1-12
-
-
Werling, D.1
Jungi, T.W.2
-
10
-
-
17644366913
-
NOD-LRR proteins: Role in host-microbial interactions and inflammatory disease
-
Inohara, Chamaillard, McDonald C, Nunez G. NOD-LRR proteins: role in host-microbial interactions and inflammatory disease. Annu Rev Biochem. 2005 ; 74: 355-383
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 355-383
-
-
Inohara1
Chamaillard2
McDonald, C.3
Nunez, G.4
-
11
-
-
36749054015
-
TLR4 polymorphisms, infectious diseases, and evolutionary pressure during migration of modern humans
-
645-16650
-
Ferwerda B, McCall MB, Alonso S, et al. TLR4 polymorphisms, infectious diseases, and evolutionary pressure during migration of modern humans. Proc Natl Acad Sci U S A. 2007 ; 104: 16 645-16650
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 16
-
-
Ferwerda, B.1
McCall, M.B.2
Alonso, S.3
-
12
-
-
57049173069
-
Molecular evolution of bovine Toll-like receptor 2 suggests substitutions of functional relevance
-
Jann OC, Werling D, Chang JS, et al. Molecular evolution of bovine Toll-like receptor 2 suggests substitutions of functional relevance. BMC Evol Biol. 2008 ; 8: 288-288
-
(2008)
BMC Evol Biol
, vol.8
, pp. 288-288
-
-
Jann, O.C.1
Werling, D.2
Chang, J.S.3
-
13
-
-
41449105582
-
Evolution of the chicken Toll-like receptor gene family: A story of gene gain and gene loss
-
Temperley ND, Berlin S, Paton IR, et al. Evolution of the chicken Toll-like receptor gene family: a story of gene gain and gene loss. BMC Genomics. 2008 ; 9: 62-62
-
(2008)
BMC Genomics
, vol.9
, pp. 62-62
-
-
Temperley, N.D.1
Berlin, S.2
Paton, I.R.3
-
14
-
-
83655181433
-
Signatures of positive selection in Toll-like receptor (TLR) genes in mammals
-
Areal H, Abrantes J, Esteves PJ. Signatures of positive selection in Toll-like receptor (TLR) genes in mammals. BMC Evol Biol. 2011 ; 11: 368-368
-
(2011)
BMC Evol Biol
, vol.11
, pp. 368-368
-
-
Areal, H.1
Abrantes, J.2
Esteves, P.J.3
-
15
-
-
84868007410
-
Adaptive evolution of Toll-like receptor 5 in domesticated mammals
-
Smith SA, Jann OC, Haig D, et al. Adaptive evolution of Toll-like receptor 5 in domesticated mammals. BMC Evol Biol. 2012 ; 12: 122-122
-
(2012)
BMC Evol Biol
, vol.12
, pp. 122-122
-
-
Smith, S.A.1
Jann, O.C.2
Haig, D.3
-
16
-
-
77955268299
-
LRRfinder: A web application for the identification of leucine-rich repeats and an integrative Toll-like receptor database
-
Offord V, Coffey TJ, Werling D. LRRfinder: a web application for the identification of leucine-rich repeats and an integrative Toll-like receptor database. Develop Compar Immunol. 2010 ; 34: 1035-1041
-
(2010)
Develop Compar Immunol
, vol.34
, pp. 1035-1041
-
-
Offord, V.1
Coffey, T.J.2
Werling, D.3
-
21
-
-
80053345905
-
SignalP 4.0: Discriminating signal peptides from transmembrane regions
-
Petersen TN, Brunak S, von Heijne G, Nielsen H. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods. 2011 ; 8: 785-786
-
(2011)
Nat Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
22
-
-
34547584314
-
Advantages of combined transmembrane topology and signal peptide prediction - The Phobius web server
-
Kall L, Krogh A, Sonnhammer EL. Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server. Nucleic Acids Res. 2007 ; 35: W429-432
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 429-432
-
-
Kall, L.1
Krogh, A.2
Sonnhammer, E.L.3
-
24
-
-
0028211273
-
A model recognition approach to the prediction of all-helical membrane protein structure and topology
-
Jones DT, Taylor WR, Thornton JM. A model recognition approach to the prediction of all-helical membrane protein structure and topology. Biochemistry. 1994 ; 33: 3038-3049
-
(1994)
Biochemistry
, vol.33
, pp. 3038-3049
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
25
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, et al. Basic local alignment search tool. J Mol Biol. 1990 ; 215: 403-410
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
-
26
-
-
34547768286
-
NetCGlyc 1.0: Prediction of mammalian C-mannosylation sites
-
Julenius K. NetCGlyc 1.0: prediction of mammalian C-mannosylation sites. Glycobiology. 2007 ; 17: 868-876
-
(2007)
Glycobiology
, vol.17
, pp. 868-876
-
-
Julenius, K.1
-
27
-
-
0031809552
-
NetOglyc: Prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility
-
Hansen JE, Lund O, Tolstrup N, et al. NetOglyc: prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility. GlycoconjugateJ. 1998 ; 15: 115-130
-
(1998)
GlycoconjugateJ
, vol.15
, pp. 115-130
-
-
Hansen, J.E.1
Lund, O.2
Tolstrup, N.3
-
28
-
-
2942564430
-
Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
-
Blom N, Sicheritz-Ponten T, Gupta R, et al. Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence. Proteomics. 2004 ; 4: 1633-1649
-
(2004)
Proteomics
, vol.4
, pp. 1633-1649
-
-
Blom, N.1
Sicheritz-Ponten, T.2
Gupta, R.3
-
29
-
-
0034044314
-
The PSIPRED protein structure prediction server
-
McGuffin LJ, Bryson K, Jones DT. The PSIPRED protein structure prediction server. Bioinformatics. 2000 ; 16: 404-405
-
(2000)
Bioinformatics
, vol.16
, pp. 404-405
-
-
McGuffin, L.J.1
Bryson, K.2
Jones, D.T.3
-
31
-
-
43049115295
-
Functional diversification of the toll-like receptor gene family
-
Hughes AL, Piontkivska H. Functional diversification of the toll-like receptor gene family. Immunogenetics. 2008 ; 60: 249-256
-
(2008)
Immunogenetics
, vol.60
, pp. 249-256
-
-
Hughes, A.L.1
Piontkivska, H.2
-
32
-
-
38349019483
-
Evidence for positive selection in the TLR9 gene of teleosts
-
Chen JS, Wang TY, Tzeng TD, et al. Evidence for positive selection in the TLR9 gene of teleosts. Fish Shellfish Immunol. 2008 ; 24: 234-242
-
(2008)
Fish Shellfish Immunol
, vol.24
, pp. 234-242
-
-
Chen, J.S.1
Wang, T.Y.2
Tzeng, T.D.3
-
33
-
-
77955975911
-
Adaptation and constraint at Toll-like receptors in primates
-
Wlasiuk G, Nachman MW. Adaptation and constraint at Toll-like receptors in primates. Mol Biol Evol. 2010 ; 27: 2172-86
-
(2010)
Mol Biol Evol
, vol.27
, pp. 2172-2186
-
-
Wlasiuk, G.1
Nachman, M.W.2
-
34
-
-
79957444584
-
Molecular evolution of the vertebrate TLR1 gene family - A complex history of gene duplication, gene conversion, positive selection and co-evolution
-
Huang Y, Temperley ND, Ren L, et al. Molecular evolution of the vertebrate TLR1 gene family - a complex history of gene duplication, gene conversion, positive selection and co-evolution. BMC Evol Biol. 2011 ; 11: 149-149
-
(2011)
BMC Evol Biol
, vol.11
, pp. 149-149
-
-
Huang, Y.1
Temperley, N.D.2
Ren, L.3
-
35
-
-
84861816807
-
Molecular evolution of vertebrate Toll-like receptors: Evolutionary rate difference between their leucine-rich repeats and their TIR domains
-
Mikami T, Miyashita H, Takatsuka S, et al. Molecular evolution of vertebrate Toll-like receptors: evolutionary rate difference between their leucine-rich repeats and their TIR domains. Gene. 2012 ; 503: 235-243
-
(2012)
Gene
, vol.503
, pp. 235-243
-
-
Mikami, T.1
Miyashita, H.2
Takatsuka, S.3
-
36
-
-
0347383758
-
Modeller: Generation and refinement of homology-based protein structure models
-
Fiser A, Sali A. Modeller: generation and refinement of homology-based protein structure models. Methods Enzymol. 2003 ; 374: 461-491
-
(2003)
Methods Enzymol
, vol.374
, pp. 461-491
-
-
Fiser, A.1
Sali, A.2
-
37
-
-
84863804364
-
Two loci in sorghum with NB-LRR encoding genes confer resistance to Colletotrichum sublineolum
-
Biruma M, Martin T, Fridborg I, et al. Two loci in sorghum with NB-LRR encoding genes confer resistance to Colletotrichum sublineolum. Theor Appl Genet. 2012 ; 124: 1005-1015
-
(2012)
Theor Appl Genet
, vol.124
, pp. 1005-1015
-
-
Biruma, M.1
Martin, T.2
Fridborg, I.3
-
38
-
-
84863229903
-
Recognition of nucleic acid ligands by toll-like receptors 7/8: Importance of chemical modification
-
Yu H, Wang Z, Sun G, Yu Y. Recognition of nucleic acid ligands by toll-like receptors 7/8: importance of chemical modification. Curr Med Chem. 2012 ; 19: 1365-1377
-
(2012)
Curr Med Chem
, vol.19
, pp. 1365-1377
-
-
Yu, H.1
Wang, Z.2
Sun, G.3
Yu, Y.4
-
39
-
-
80155184539
-
A highly conserved NB-LRR encoding gene cluster effective against Setosphaeria turcica in sorghum
-
Martin T, Biruma M, Fridborg I, et al. A highly conserved NB-LRR encoding gene cluster effective against Setosphaeria turcica in sorghum. BMC Plant Biol. 2011 ; 11: 151-151
-
(2011)
BMC Plant Biol
, vol.11
, pp. 151-151
-
-
Martin, T.1
Biruma, M.2
Fridborg, I.3
-
40
-
-
84874023911
-
Dynamic evolution of toll-like receptor multigene families in echinoderms
-
Buckley KM, Rast JP. Dynamic evolution of toll-like receptor multigene families in echinoderms. Front Immunol. 2012 ; 3: 136-136
-
(2012)
Front Immunol
, vol.3
, pp. 136-136
-
-
Buckley, K.M.1
Rast, J.P.2
-
41
-
-
84880262950
-
Identification of single nucleotide polymorphisms in the bovine Toll-like receptor 1 gene and association with health traits in cattle
-
Russell CD, Widdison S, Leigh JA, Coffey TJ. Identification of single nucleotide polymorphisms in the bovine Toll-like receptor 1 gene and association with health traits in cattle. Vet Res. 2012 ; 43: 17-17
-
(2012)
Vet Res
, vol.43
, pp. 17-17
-
-
Russell, C.D.1
Widdison, S.2
Leigh, J.A.3
Coffey, T.J.4
-
42
-
-
79960969159
-
Characterizing immune receptors from new genome sequences
-
Buckley KM, Rast JP. Characterizing immune receptors from new genome sequences. Methods Mol Biol. 2011 ; 748: 273-298
-
(2011)
Methods Mol Biol
, vol.748
, pp. 273-298
-
-
Buckley, K.M.1
Rast, J.P.2
-
43
-
-
70350464185
-
Toll-like receptors of the ascidian Ciona intestinalis: Prototypes with hybrid functionalities of vertebrate Toll-like receptors
-
336-27343
-
Sasaki N, Ogasawara M, Sekiguchi T, et al. Toll-like receptors of the ascidian Ciona intestinalis: prototypes with hybrid functionalities of vertebrate Toll-like receptors. J Biol Chem. 2009 ; 284: 27 336-27343
-
(2009)
J Biol Chem
, vol.284
, pp. 27
-
-
Sasaki, N.1
Ogasawara, M.2
Sekiguchi, T.3
-
44
-
-
0032919370
-
SMART: Identification and annotation of domains from signalling and extracellular protein sequences
-
Ponting CP, Schultz J, Milpetz F, Bork P. SMART: identification and annotation of domains from signalling and extracellular protein sequences. Nucleic Acids Res. 1999 ; 27: 229-232
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 229-232
-
-
Ponting, C.P.1
Schultz, J.2
Milpetz, F.3
Bork, P.4
|