메뉴 건너뛰기




Volumn 199, Issue 3, 2013, Pages 650-662

Transcriptome analysis of the sulfate deficiency response in the marine microalga Emiliania huxleyi

Author keywords

Dimethylsulfoniopropionate (DMSP); Emiliania huxleyi; Glutathione; RNA sequencing; Sulfate deficiency; Sulfur metabolism; Transcriptomics

Indexed keywords

GLUTATHIONE; SULFATE; SULFUR; THIOL DERIVATIVE;

EID: 84880306187     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/nph.12303     Document Type: Article
Times cited : (65)

References (59)
  • 1
    • 73849091276 scopus 로고    scopus 로고
    • Selenium utilization strategy by microalgae
    • Araie H, Shiraiwa Y. 2009. Selenium utilization strategy by microalgae. Molecules 14: 4880-4891.
    • (2009) Molecules , vol.14 , pp. 4880-4891
    • Araie, H.1    Shiraiwa, Y.2
  • 3
    • 0035682886 scopus 로고    scopus 로고
    • Evolution of an artificial seawater medium: improvements in enriched seawater, artificial water over the last two decades
    • Berges JA, Franklin DJ, Harrison PJ. 2001. Evolution of an artificial seawater medium: improvements in enriched seawater, artificial water over the last two decades. Journal of Phycology 37: 1138-1145.
    • (2001) Journal of Phycology , vol.37 , pp. 1138-1145
    • Berges, J.A.1    Franklin, D.J.2    Harrison, P.J.3
  • 4
    • 0033213374 scopus 로고    scopus 로고
    • Increased resistance to oxidative stress in transgenic tobacco plants overexpressing bacterial serine acetyltransferase
    • Blaszczyk A, Brodzik R, Sirko A. 1999. Increased resistance to oxidative stress in transgenic tobacco plants overexpressing bacterial serine acetyltransferase. Plant Journal 20: 237-243.
    • (1999) Plant Journal , vol.20 , pp. 237-243
    • Blaszczyk, A.1    Brodzik, R.2    Sirko, A.3
  • 6
    • 2942549112 scopus 로고    scopus 로고
    • Iterative Group Analysis (iGA): a simple tool to enhance sensitivity and facilitate interpretation of microarray experiments
    • Breitling R, Amtmann A, Herzyk P. 2004. Iterative Group Analysis (iGA): a simple tool to enhance sensitivity and facilitate interpretation of microarray experiments. BMC Bioinformatics 5: 34.
    • (2004) BMC Bioinformatics , vol.5 , pp. 34
    • Breitling, R.1    Amtmann, A.2    Herzyk, P.3
  • 7
    • 0033056545 scopus 로고    scopus 로고
    • Uptake and assimilation of sulphate by sulphur deficient Zea mays cells: the role of O-acetyl-L-serine in the interaction between nitrogen and sulphur assimilatory pathways
    • Clarkson DT, Diogo E, Amâncio S. 1999. Uptake and assimilation of sulphate by sulphur deficient Zea mays cells: the role of O-acetyl-L-serine in the interaction between nitrogen and sulphur assimilatory pathways. Plant Physiology and Biochemistry 37: 283-290.
    • (1999) Plant Physiology and Biochemistry , vol.37 , pp. 283-290
    • Clarkson, D.T.1    Diogo, E.2    Amâncio, S.3
  • 8
    • 0033149802 scopus 로고    scopus 로고
    • Sac3, a Snf1-like serine threonine kinase that positively and negatively regulates the responses of Chlamydomonas to sulfur limitation
    • Davies JP, Yildiz FH, Grossman AR. 1999. Sac3, a Snf1-like serine threonine kinase that positively and negatively regulates the responses of Chlamydomonas to sulfur limitation. Plant Cell 11: 1179-1190.
    • (1999) Plant Cell , vol.11 , pp. 1179-1190
    • Davies, J.P.1    Yildiz, F.H.2    Grossman, A.R.3
  • 9
  • 10
    • 0017889205 scopus 로고
    • Identification of the catalytic site of rat liver glutathione peroxidase as selenocysteine
    • Forstrom JW, Zakowski JJ, Tappel AL. 1978. Identification of the catalytic site of rat liver glutathione peroxidase as selenocysteine. Biochemistry 17: 2639-2644.
    • (1978) Biochemistry , vol.17 , pp. 2639-2644
    • Forstrom, J.W.1    Zakowski, J.J.2    Tappel, A.L.3
  • 11
    • 17644406053 scopus 로고    scopus 로고
    • Sulfur and phytoplankton: acquisition, metabolism and impact on the environment
    • Giordano M, Norici A, Hell R. 2005. Sulfur and phytoplankton: acquisition, metabolism and impact on the environment. New Phytologist 166: 371-382.
    • (2005) New Phytologist , vol.166 , pp. 371-382
    • Giordano, M.1    Norici, A.2    Hell, R.3
  • 12
    • 0033794301 scopus 로고    scopus 로고
    • Strategies for the allocation of resources under sulfur limitation in the green alga Dunaliella salina
    • Giordano M, Pezzoni V, Hell R. 2000. Strategies for the allocation of resources under sulfur limitation in the green alga Dunaliella salina. Plant Physiology 124: 857-864.
    • (2000) Plant Physiology , vol.124 , pp. 857-864
    • Giordano, M.1    Pezzoni, V.2    Hell, R.3
  • 13
    • 77955686486 scopus 로고    scopus 로고
    • RNA-Seq analysis of sulfur-deprived chlamydomonas cells reveals aspects of acclimation critical for cell survival
    • González-Ballester D, Casero D, Cokus S, Pellegrini M, Merchant SS, Grossman AR. 2010. RNA-Seq analysis of sulfur-deprived chlamydomonas cells reveals aspects of acclimation critical for cell survival. Plant Cell 22: 2058-2084.
    • (2010) Plant Cell , vol.22 , pp. 2058-2084
    • González-Ballester, D.1    Casero, D.2    Cokus, S.3    Pellegrini, M.4    Merchant, S.S.5    Grossman, A.R.6
  • 15
    • 57749093980 scopus 로고    scopus 로고
    • Mitochondrial serine acetyltransferase functions as a pacemaker of cysteine synthesis in plant cells
    • Haas FH, Heeg C, Queiroz R, Bauer A, Wirtz M, Hell R. 2008. Mitochondrial serine acetyltransferase functions as a pacemaker of cysteine synthesis in plant cells. Plant Physiology 148: 1055-1067.
    • (2008) Plant Physiology , vol.148 , pp. 1055-1067
    • Haas, F.H.1    Heeg, C.2    Queiroz, R.3    Bauer, A.4    Wirtz, M.5    Hell, R.6
  • 17
    • 35348880995 scopus 로고    scopus 로고
    • Thiol-based regulation of redox-active glutamate-cysteine ligase from Arabidopsis thaliana
    • Hicks LM, Cahoon RE, Bonner ER, Rivard RS, Sheffield J, Jez JM. 2007. Thiol-based regulation of redox-active glutamate-cysteine ligase from Arabidopsis thaliana. Plant Cell 19: 2653-2661.
    • (2007) Plant Cell , vol.19 , pp. 2653-2661
    • Hicks, L.M.1    Cahoon, R.E.2    Bonner, E.R.3    Rivard, R.S.4    Sheffield, J.5    Jez, J.M.6
  • 18
    • 0344177200 scopus 로고    scopus 로고
    • Global expression profiling of sulfur-starved Arabidopsis by DNA macroarray reveals the role of O-acetyl-l-serine as a general regulator of gene expression in response to sulfur nutrition
    • Hirai MY, Fujiwara T, Awazuhara M, Kimura T, Noji M, Saito K. 2003. Global expression profiling of sulfur-starved Arabidopsis by DNA macroarray reveals the role of O-acetyl-l-serine as a general regulator of gene expression in response to sulfur nutrition. Plant Journal 33: 651-663.
    • (2003) Plant Journal , vol.33 , pp. 651-663
    • Hirai, M.Y.1    Fujiwara, T.2    Awazuhara, M.3    Kimura, T.4    Noji, M.5    Saito, K.6
  • 19
    • 84855296494 scopus 로고    scopus 로고
    • The response of diatom central carbon metabolism to nitrogen starvation is different from that of green algae and higher plants
    • Hockin NL, Mock T, Mulholland F, Kopriva S, Malin G. 2012. The response of diatom central carbon metabolism to nitrogen starvation is different from that of green algae and higher plants. Plant Physiology 158: 299-312.
    • (2012) Plant Physiology , vol.158 , pp. 299-312
    • Hockin, N.L.1    Mock, T.2    Mulholland, F.3    Kopriva, S.4    Malin, G.5
  • 20
    • 38149062772 scopus 로고    scopus 로고
    • Metabolomics integrated with transcriptomics: assessing systems response to sulfur-deficiency stress
    • Hoefgen R, Nikiforova VJ. 2008. Metabolomics integrated with transcriptomics: assessing systems response to sulfur-deficiency stress. Physiologia Plantarum 132: 190-198.
    • (2008) Physiologia Plantarum , vol.132 , pp. 190-198
    • Hoefgen, R.1    Nikiforova, V.J.2
  • 21
    • 0023877363 scopus 로고
    • Purification and biosynthesis of derepressible periplasmic arylsulfatase from Chlamydomonas reinhardtii
    • de Hostos EL, Togasaki RK, Grossman AR. 1988. Purification and biosynthesis of derepressible periplasmic arylsulfatase from Chlamydomonas reinhardtii. Journal of Cell Biology 106: 29-37.
    • (1988) Journal of Cell Biology , vol.106 , pp. 29-37
    • de Hostos, E.L.1    Togasaki, R.K.2    Grossman, A.R.3
  • 23
    • 48949120156 scopus 로고    scopus 로고
    • Complex signaling network in regulation of adenosine 5′-phosphosulfate reductase by salt stress in Arabidopsis roots
    • Koprivova A, North KA, Kopriva S. 2008. Complex signaling network in regulation of adenosine 5′-phosphosulfate reductase by salt stress in Arabidopsis roots. Plant Physiology 146: 1408-1420.
    • (2008) Plant Physiology , vol.146 , pp. 1408-1420
    • Koprivova, A.1    North, K.A.2    Kopriva, S.3
  • 24
    • 80052458443 scopus 로고    scopus 로고
    • Role of HY5 in regulation of sulfate assimilation in Arabidopsis
    • Lee B-R, Koprivova A, Kopriva S. 2011. Role of HY5 in regulation of sulfate assimilation in Arabidopsis. Plant Journal 67: 1042-1054.
    • (2011) Plant Journal , vol.67 , pp. 1042-1054
    • Lee, B.-R.1    Koprivova, A.2    Kopriva, S.3
  • 25
    • 82755171813 scopus 로고    scopus 로고
    • Proteomic analysis of a sea-ice diatom: salinity acclimation provides new insight into the dimethylsulfoniopropionate production pathway
    • Lyon BR, Lee PA, Bennett JM, DiTullio GR, Janech MG. 2011. Proteomic analysis of a sea-ice diatom: salinity acclimation provides new insight into the dimethylsulfoniopropionate production pathway. Plant Physiology 157: 1926-1941.
    • (2011) Plant Physiology , vol.157 , pp. 1926-1941
    • Lyon, B.R.1    Lee, P.A.2    Bennett, J.M.3    DiTullio, G.R.4    Janech, M.G.5
  • 27
    • 0037783227 scopus 로고    scopus 로고
    • Transcriptome profiling of sulfur-responsive genes in Arabidopsis reveals global effects of sulfur nutrition on multiple metabolic pathways
    • Maruyama-Nakashita A, Inoue E, Watanabe-Takahashi A, Yamaya T, Takahashi H. 2003. Transcriptome profiling of sulfur-responsive genes in Arabidopsis reveals global effects of sulfur nutrition on multiple metabolic pathways. Plant Physiology 132: 597-605.
    • (2003) Plant Physiology , vol.132 , pp. 597-605
    • Maruyama-Nakashita, A.1    Inoue, E.2    Watanabe-Takahashi, A.3    Yamaya, T.4    Takahashi, H.5
  • 28
    • 33845765675 scopus 로고    scopus 로고
    • Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur response and metabolism
    • Maruyama-Nakashita A, Nakamura Y, Tohge T, Saito K, Takahashi H. 2006. Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur response and metabolism. Plant Cell 18: 3235-3251.
    • (2006) Plant Cell , vol.18 , pp. 3235-3251
    • Maruyama-Nakashita, A.1    Nakamura, Y.2    Tohge, T.3    Saito, K.4    Takahashi, H.5
  • 29
    • 0033759410 scopus 로고    scopus 로고
    • Sustained photobiological hydrogen gas production upon reversible inactivation of oxygen evolution in the green alga Chlamydomonas reinhardtii
    • Melis A, Zhang L, Forestier M, Ghirardi ML, Seibert M. 2000. Sustained photobiological hydrogen gas production upon reversible inactivation of oxygen evolution in the green alga Chlamydomonas reinhardtii. Plant Physiology 122: 127-136.
    • (2000) Plant Physiology , vol.122 , pp. 127-136
    • Melis, A.1    Zhang, L.2    Forestier, M.3    Ghirardi, M.L.4    Seibert, M.5
  • 31
    • 0037296141 scopus 로고    scopus 로고
    • Transcriptome analysis of sulfur depletion in Arabidopsis thaliana: interlacing of biosynthetic pathways provides response specificity
    • Nikiforova V, Freitag J, Kempa S, Adamik M, Hesse H, Hoefgen R. 2003. Transcriptome analysis of sulfur depletion in Arabidopsis thaliana: interlacing of biosynthetic pathways provides response specificity. Plant Journal 33: 633-650.
    • (2003) Plant Journal , vol.33 , pp. 633-650
    • Nikiforova, V.1    Freitag, J.2    Kempa, S.3    Adamik, M.4    Hesse, H.5    Hoefgen, R.6
  • 33
    • 0035711356 scopus 로고    scopus 로고
    • A review of the coccolithophorid Emiliania huxleyi (Prymnesiophyceae), with particular reference to growth, coccolith formation, and calcification-photosynthesis interactions
    • Paasche E. 2001. A review of the coccolithophorid Emiliania huxleyi (Prymnesiophyceae), with particular reference to growth, coccolith formation, and calcification-photosynthesis interactions. Phycologia 40: 503-529.
    • (2001) Phycologia , vol.40 , pp. 503-529
    • Paasche, E.1
  • 34
    • 77955679170 scopus 로고    scopus 로고
    • Identification and regulation of plasma membrane sulfate transporters in Chlamydomonas
    • Pootakham W, Gonzalez-Ballester D, Grossman AR. 2010. Identification and regulation of plasma membrane sulfate transporters in Chlamydomonas. Plant Physiology 153: 1653-1668.
    • (2010) Plant Physiology , vol.153 , pp. 1653-1668
    • Pootakham, W.1    Gonzalez-Ballester, D.2    Grossman, A.R.3
  • 35
    • 82555195554 scopus 로고    scopus 로고
    • The case against climate regulation via oceanic phytoplankton sulphur emissions
    • Quinn PK, Bates TS. 2011. The case against climate regulation via oceanic phytoplankton sulphur emissions. Nature 480: 51-56.
    • (2011) Nature , vol.480 , pp. 51-56
    • Quinn, P.K.1    Bates, T.S.2
  • 36
    • 79959369889 scopus 로고    scopus 로고
    • Did sulfate availability facilitate the evolutionary expansion of chlorophyll a+c phytoplankton in the oceans?
    • Ratti S, Knoll AH, Giordano M. 2011. Did sulfate availability facilitate the evolutionary expansion of chlorophyll a+c phytoplankton in the oceans? Geobiology 9: 301-312.
    • (2011) Geobiology , vol.9 , pp. 301-312
    • Ratti, S.1    Knoll, A.H.2    Giordano, M.3
  • 38
    • 0033828996 scopus 로고    scopus 로고
    • Physiological aspects of the production and conversion of DMSP in marine algae and higher plants
    • Stefels J. 2000. Physiological aspects of the production and conversion of DMSP in marine algae and higher plants. Journal of Sea Research 43: 183-197.
    • (2000) Journal of Sea Research , vol.43 , pp. 183-197
    • Stefels, J.1
  • 39
    • 0033824801 scopus 로고    scopus 로고
    • Determinations of dimethylsulphoniopropionate (DMSP) lyase activity using headspace analysis of dimethylsulphide (DMS)
    • Steinke M, Malin G, Turner SM, Liss PS. 2000. Determinations of dimethylsulphoniopropionate (DMSP) lyase activity using headspace analysis of dimethylsulphide (DMS). Journal of Sea Research 43: 233-244.
    • (2000) Journal of Sea Research , vol.43 , pp. 233-244
    • Steinke, M.1    Malin, G.2    Turner, S.M.3    Liss, P.S.4
  • 41
    • 0032542349 scopus 로고    scopus 로고
    • Partial characterisation of dimethylsulfoniopropionate (DMSP) lyase isozymes in 6 strains of Emiliania huxleyi
    • Steinke M, Wolfe GV, Kirst GO. 1998. Partial characterisation of dimethylsulfoniopropionate (DMSP) lyase isozymes in 6 strains of Emiliania huxleyi. Marine Ecology Progress Series 175: 215-225.
    • (1998) Marine Ecology Progress Series , vol.175 , pp. 215-225
    • Steinke, M.1    Wolfe, G.V.2    Kirst, G.O.3
  • 42
    • 34548456763 scopus 로고    scopus 로고
    • Utilization of a chloroplast membrane sulfolipid as a major internal sulfur source for protein synthesis in the early phase of sulfur starvation in Chlamydomonas reinhardtii
    • Sugimoto K, Sato N, Tsuzuki M. 2007. Utilization of a chloroplast membrane sulfolipid as a major internal sulfur source for protein synthesis in the early phase of sulfur starvation in Chlamydomonas reinhardtii. FEBS Letters 581: 4519-4522.
    • (2007) FEBS Letters , vol.581 , pp. 4519-4522
    • Sugimoto, K.1    Sato, N.2    Tsuzuki, M.3
  • 43
    • 74549225200 scopus 로고    scopus 로고
    • Regulation of synthesis and degradation of a sulfolipid under sulfur-starved conditions and its physiological significance in Chlamydomonas reinhardtii
    • Sugimoto K, Tsuzuki M, Sato N. 2010. Regulation of synthesis and degradation of a sulfolipid under sulfur-starved conditions and its physiological significance in Chlamydomonas reinhardtii. New Phytologist 185: 676-686.
    • (2010) New Phytologist , vol.185 , pp. 676-686
    • Sugimoto, K.1    Tsuzuki, M.2    Sato, N.3
  • 45
    • 79955571171 scopus 로고    scopus 로고
    • Sulfur assimilation in photosynthetic organisms: molecular functions and regulations of transporters and assimilatory enzymes
    • Takahashi H, Kopriva S, Giordano M, Saito K, Hell R. 2011a. Sulfur assimilation in photosynthetic organisms: molecular functions and regulations of transporters and assimilatory enzymes. Annual Reviews of Plant Biology 62: 157-184.
    • (2011) Annual Reviews of Plant Biology , vol.62 , pp. 157-184
    • Takahashi, H.1    Kopriva, S.2    Giordano, M.3    Saito, K.4    Hell, R.5
  • 47
    • 79953233746 scopus 로고    scopus 로고
    • Decoding algal genomes: tracing back the history of photosynthetic life on Earth
    • Tirichine L, Bowler C. 2011. Decoding algal genomes: tracing back the history of photosynthetic life on Earth. Plant Journal 66: 45-57.
    • (2011) Plant Journal , vol.66 , pp. 45-57
    • Tirichine, L.1    Bowler, C.2
  • 50
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 54
    • 0036689269 scopus 로고    scopus 로고
    • Temperature, light, and the dimethylsulfoniopropionate (DMSP) content of Emiliania huxleyi (Prymnesiophyceae)
    • Van Rijssel M, Gieskes WWC. 2002. Temperature, light, and the dimethylsulfoniopropionate (DMSP) content of Emiliania huxleyi (Prymnesiophyceae). Journal of Sea Research 48: 17-27.
    • (2002) Journal of Sea Research , vol.48 , pp. 17-27
    • Van Rijssel, M.1    Gieskes, W.W.C.2
  • 55
    • 0036742028 scopus 로고    scopus 로고
    • Flux control of sulphate assimilation in Arabidopsis thaliana: adenosine 5'-phosphosulphate reductase is more susceptible to negative control by thiols than ATP sulphurylase
    • Vauclare P, Kopriva S, Fell D, Suter M, Sticher L, von Ballmoos O, Krähenbuhl U, Op den Camp R, Brunold C. 2002. Flux control of sulphate assimilation in Arabidopsis thaliana: adenosine 5'-phosphosulphate reductase is more susceptible to negative control by thiols than ATP sulphurylase. Plant Journal 31: 729-740.
    • (2002) Plant Journal , vol.31 , pp. 729-740
    • Vauclare, P.1    Kopriva, S.2    Fell, D.3    Suter, M.4    Sticher, L.5    von Ballmoos, O.6    Krähenbuhl, U.7    Op den Camp, R.8    Brunold, C.9
  • 56
    • 0032068061 scopus 로고    scopus 로고
    • The regulation of photosynthetic electron transport during nutrient deprivation in Chlamydomonas reinhardtii
    • Wykoff DD, Davies JP, Melis A, Grossman AR. 1998. The regulation of photosynthetic electron transport during nutrient deprivation in Chlamydomonas reinhardtii. Plant Physiology 117: 129-139.
    • (1998) Plant Physiology , vol.117 , pp. 129-139
    • Wykoff, D.D.1    Davies, J.P.2    Melis, A.3    Grossman, A.R.4
  • 57
    • 84863896971 scopus 로고    scopus 로고
    • Reduced calcification decreases photoprotective capability in the coccolithophorid Emiliania huxleyi
    • Xu K, Gao K. 2012. Reduced calcification decreases photoprotective capability in the coccolithophorid Emiliania huxleyi. Plant and Cell Physiology 53: 1267-1274.
    • (2012) Plant and Cell Physiology , vol.53 , pp. 1267-1274
    • Xu, K.1    Gao, K.2
  • 58
    • 0027966651 scopus 로고
    • Characterization of sulfate transport in Chlamydomonas reinhardtii during sulfur-limited and sulfur-sufficient growth
    • Yildiz FH, Davies JP, Grossman AR. 1994. Characterization of sulfate transport in Chlamydomonas reinhardtii during sulfur-limited and sulfur-sufficient growth. Plant Physiology 104: 981-987.
    • (1994) Plant Physiology , vol.104 , pp. 981-987
    • Yildiz, F.H.1    Davies, J.P.2    Grossman, A.R.3
  • 59
    • 0036481398 scopus 로고    scopus 로고
    • 2-producing Chlamydomonas reinhardtii (green alga)
    • 2-producing Chlamydomonas reinhardtii (green alga). Planta 214: 552-561.
    • (2002) Planta , vol.214 , pp. 552-561
    • Zhang, L.1    Happe, T.2    Melis, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.