-
1
-
-
84862814707
-
Crystal structures of the Tudor domains of human PHF20 reveal novel structural variations on the Royal Family of proteins
-
Adams-Cioaba, M.A. et al. (2012) Crystal structures of the Tudor domains of human PHF20 reveal novel structural variations on the Royal Family of proteins. FEBS Lett., 586, 859-865.
-
(2012)
FEBS Lett.
, vol.586
, pp. 859-865
-
-
Adams-Cioaba, M.A.1
-
2
-
-
65249151919
-
Structure and function of histone methyla-tion binding proteins
-
Adams-Cioaba, M.A. and Min, J. (2009) Structure and function of histone methyla-tion binding proteins. Biochem. Cell Biol., 87, 93-105.
-
(2009)
Biochem. Cell Biol.
, vol.87
, pp. 93-105
-
-
Adams-Cioaba, M.A.1
Min, J.2
-
3
-
-
0033574503
-
Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches
-
Aravind, L. and Koonin, E.V. (1999) Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. J. Mol. Biol., 287, 1023-1040.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 1023-1040
-
-
Aravind, L.1
Koonin, E.V.2
-
4
-
-
81555212272
-
Structural basis of silencing: Sir3 BAH domain in complex with a nucleosome at 3.0 A resolution
-
Armache, K.J. et al. (2011) Structural basis of silencing: Sir3 BAH domain in complex with a nucleosome at 3.0 A resolution. Science, 334, 977-982.
-
(2011)
Science
, vol.334
, pp. 977-982
-
-
Armache, K.J.1
-
5
-
-
80052608062
-
Mutations in CIC and FUBP1 contribute to human oligodendroglioma
-
Bettegowda, C. et al. (2011) Mutations in CIC and FUBP1 contribute to human oligodendroglioma. Science, 333, 1453-1455.
-
(2011)
Science
, vol.333
, pp. 1453-1455
-
-
Bettegowda, C.1
-
6
-
-
0031031787
-
From BRCA1 to RAP1: A widespread BRCT module closely associated with DNA repair
-
Callebaut, I. and Mornon, J.P. (1997a) From BRCA1 to RAP1: a widespread BRCT module closely associated with DNA repair. FEBS Lett., 400, 25-30.
-
(1997)
FEBS Lett.
, vol.400
, pp. 25-30
-
-
Callebaut, I.1
Mornon, J.P.2
-
7
-
-
0031027360
-
The human EBNA-2 coactivator p100: Multidomain organization and relationship to the staphylococcal nuclease fold and to the tudor protein involved in Drosophila melanogaster development
-
Callebaut, I. and Mornon, J.P. (1997b) The human EBNA-2 coactivator p100: multidomain organization and relationship to the staphylococcal nuclease fold and to the tudor protein involved in Drosophila melanogaster development. Biochem. J., 321, 125-132.
-
(1997)
Biochem. J.
, vol.321
, pp. 125-132
-
-
Callebaut, I.1
Mornon, J.P.2
-
8
-
-
0030690133
-
Deciphering protein sequence information through hydro-phobic cluster analysis (HCA): Current status and perspectives
-
Callebaut, I. et al. (1997) Deciphering protein sequence information through hydro-phobic cluster analysis (HCA): current status and perspectives. Cell Mol. Life Sci., 53, 621-645.
-
(1997)
Cell Mol. Life Sci.
, vol.53
, pp. 621-645
-
-
Callebaut, I.1
-
9
-
-
0032991918
-
The BAH (bromo-adjacent homology) domain: A link between DNA methylation, replication and transcriptional regulation
-
Callebaut, I. et al. (1999) The BAH (bromo-adjacent homology) domain: a link between DNA methylation, replication and transcriptional regulation. FEBS Lett., 446, 189-193.
-
(1999)
FEBS Lett.
, vol.446
, pp. 189-193
-
-
Callebaut, I.1
-
10
-
-
0037102538
-
Metallo-beta-lactamase fold within nucleic acids processing enzymes: The beta-CASP family
-
Callebaut, I. et al. (2002) Metallo-beta-lactamase fold within nucleic acids processing enzymes: the beta-CASP family. Nucleic Acids Res., 30, 3592-3601.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3592-3601
-
-
Callebaut, I.1
-
11
-
-
25444456367
-
Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: Conserved features and differences relative to other eukaryotes
-
Callebaut, I. et al. (2005) Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: conserved features and differences relative to other eukaryotes. BMC Genomics, 6, 100.
-
(2005)
BMC Genomics
, vol.6
, pp. 100
-
-
Callebaut, I.1
-
12
-
-
33744938713
-
Cernunnos interacts with the XRCC4 x DNA-ligase IV complex and is homologous to the yeast nonhomologous end-joining factor Nej1
-
Callebaut, I. et al. (2006) Cernunnos interacts with the XRCC4 x DNA-ligase IV complex and is homologous to the yeast nonhomologous end-joining factor Nej1. J. Biol. Chem., 281, 13857-13860.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 13857-13860
-
-
Callebaut, I.1
-
13
-
-
84866091585
-
PHF20 is an effector protein of p53 double lysine methylation that stabilizes and activates p53
-
Cui, G. et al. (2012) PHF20 is an effector protein of p53 double lysine methylation that stabilizes and activates p53. Nat. Struct. Mol. Biol., 19, 916-924.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 916-924
-
-
Cui, G.1
-
14
-
-
80054984945
-
Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia
-
Dawson, M.A. et al. (2011) Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia. Nature, 478, 529-533.
-
(2011)
Nature
, vol.478
, pp. 529-533
-
-
Dawson, M.A.1
-
15
-
-
16244423379
-
Multi-domain proteins in the three kingdoms of life: Orphan domains and other unassigned regions
-
Ekman, D. et al. (2005) Multi-domain proteins in the three kingdoms of life: orphan domains and other unassigned regions. J. Mol. Biol., 348, 231-243.
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 231-243
-
-
Ekman, D.1
-
16
-
-
33846630895
-
A generalized analysis of hydrophobic and loop clusters within globular protein sequences
-
Eudes, R. et al. (2007) A generalized analysis of hydrophobic and loop clusters within globular protein sequences. BMC Struct. Biol., 7, 2.
-
(2007)
BMC Struct. Biol.
, vol.7
, pp. 2
-
-
Eudes, R.1
-
17
-
-
79959931985
-
HMMER web server: Interactive sequence similarity searching
-
Finn, R.D. et al. (2011) HMMER web server: interactive sequence similarity searching. Nucleic Acids Res., 39, W29-W37.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Finn, R.D.1
-
18
-
-
0035434378
-
You bet-cha: A novel family of transcriptional regulators
-
Florence, B. and Faller, D.V. (2001) You bet-cha: a novel family of transcriptional regulators. Front Biosci., 6, D1008-D10018.
-
(2001)
Front Biosci.
, vol.6
-
-
Florence, B.1
Faller, D.V.2
-
19
-
-
0023657949
-
Hydrophobic cluster analysis: An efficient new way to compare and analyse amino acid sequences
-
Gaboriaud, C. et al. (1987) Hydrophobic cluster analysis: an efficient new way to compare and analyse amino acid sequences. FEBS Lett., 224, 149-155.
-
(1987)
FEBS Lett.
, vol.224
, pp. 149-155
-
-
Gaboriaud, C.1
-
20
-
-
0034732264
-
ENL, the MLL fusion partner in t(11;19), binds to the c-Abl interactor protein 1 (ABI1) that is fused to MLL in t(10;11)
-
Garcia-Cuellar, M.P. et al. (2000) ENL, the MLL fusion partner in t(11;19), binds to the c-Abl interactor protein 1 (ABI1) that is fused to MLL in t(10;11). Oncogene, 19, 1744-1751.
-
(2000)
Oncogene
, vol.19
, pp. 1744-1751
-
-
Garcia-Cuellar, M.P.1
-
21
-
-
0035945657
-
The ENL moiety of the childhood leukemia-associated MLL-ENL oncoprotein recruits human Polycomb 3
-
Garcia-Cuellar, M.P. et al. (2001) The ENL moiety of the childhood leukemia-associated MLL-ENL oncoprotein recruits human Polycomb 3. Oncogene, 20, 411-419.
-
(2001)
Oncogene
, vol.20
, pp. 411-419
-
-
Garcia-Cuellar, M.P.1
-
22
-
-
80052571366
-
Human Polymerase-Associated Factor complex (PAFc) connects the Super Elongation Complex (SEC) to RNA polymerase II on chromatin
-
He, N. et al. (2011) Human Polymerase-Associated Factor complex (PAFc) connects the Super Elongation Complex (SEC) to RNA polymerase II on chromatin. Proc. Natl Acad. Sci. USA, 108, E636-E645.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
-
-
He, N.1
-
23
-
-
0037402587
-
Non-intertwined binary patterns of hydrophobic/nonhy-drophobic amino acids are considerably better markers of regular secondary structures than nonconstrained patterns
-
Hennetin, J. et al. (2003) Non-intertwined binary patterns of hydrophobic/nonhy-drophobic amino acids are considerably better markers of regular secondary structures than nonconstrained patterns. Proteins, 51, 236-244.
-
(2003)
Proteins
, vol.51
, pp. 236-244
-
-
Hennetin, J.1
-
24
-
-
78650609911
-
Transcriptional silencing functions of the yeast protein Orc1/Sir3 subfunctionalized after gene duplication
-
Hickman, M.A. and Rusche, L.N. (2010) Transcriptional silencing functions of the yeast protein Orc1/Sir3 subfunctionalized after gene duplication. Proc. Natl Acad. Sci. USA, 107, 19384-19389.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 19384-19389
-
-
Hickman, M.A.1
Rusche, L.N.2
-
25
-
-
20844445832
-
Structural basis of the Sir1-origin recognition complex interaction in transcriptional silencing
-
Hou, Z. et al. (2005) Structural basis of the Sir1-origin recognition complex interaction in transcriptional silencing. Proc. Natl Acad. Sci. USA, 102, 8489-8494.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 8489-8494
-
-
Hou, Z.1
-
26
-
-
84861209129
-
The Capicua repressor-a general sensor of RTK signaling in development and disease
-
Jimenez, G. et al. (2012) The Capicua repressor-a general sensor of RTK signaling in development and disease. J. Cell Sci., 125, 1383-1391.
-
(2012)
J. Cell Sci.
, vol.125
, pp. 1383-1391
-
-
Jimenez, G.1
-
27
-
-
84862818911
-
The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome
-
Kuo, A.J. et al. (2012) The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome. Nature, 484, 115-119.
-
(2012)
Nature
, vol.484
, pp. 115-119
-
-
Kuo, A.J.1
-
28
-
-
0042470632
-
Yaf9, a novel NuA4 histone acetyltransferase subunit, is required for the cellular response to spindle stress in yeast
-
Le Masson, I. et al. (2003) Yaf9, a novel NuA4 histone acetyltransferase subunit, is required for the cellular response to spindle stress in yeast. Mol. Cell. Biol., 23, 6086-6102.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 6086-6102
-
-
Le Masson, I.1
-
29
-
-
84872157616
-
Leukemia fusion target AF9 is an intrinsically disordered transcriptional regulator that recruits multiple partners via coupled folding and binding
-
Leach, B.I. et al. (2013) Leukemia fusion target AF9 is an intrinsically disordered transcriptional regulator that recruits multiple partners via coupled folding and binding. Structure, 21, 176-183.
-
(2013)
Structure
, vol.21
, pp. 176-183
-
-
Leach, B.I.1
-
30
-
-
56749096290
-
Solution structure of the extraterminal domain of the bromo-domain-containing protein BRD4
-
Lin, Y.J. et al. (2008) Solution structure of the extraterminal domain of the bromo-domain-containing protein BRD4. Protein Sci., 17, 2174-2179.
-
(2008)
Protein Sci.
, vol.17
, pp. 2174-2179
-
-
Lin, Y.J.1
-
31
-
-
84865419994
-
The super elongation complex (SEC) family in transcriptional control
-
Luo, Z. et al. (2012) The super elongation complex (SEC) family in transcriptional control. Nat. Rev. Mol. Cell. Biol., 13, 543-547.
-
(2012)
Nat. Rev. Mol. Cell. Biol.
, vol.13
, pp. 543-547
-
-
Luo, Z.1
-
32
-
-
84875445608
-
CDD: Conserved domains and protein three-dimensional structure
-
Marchler-Bauer, A. et al. (2013) CDD: conserved domains and protein three-dimensional structure. Nucleic Acids Res., 41, D348-D352.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Marchler-Bauer, A.1
-
33
-
-
84856916060
-
The pathogenesis of mixed-lineage leukemia
-
Muntean, A.G. and Hess, J.L. (2012) The pathogenesis of mixed-lineage leukemia. Annu. Rev. Pathol., 7, 283-301.
-
(2012)
Annu. Rev. Pathol.
, vol.7
, pp. 283-301
-
-
Muntean, A.G.1
Hess, J.L.2
-
34
-
-
0032534020
-
Populations of hydrophobic amino acids within protein globular domains: Identification of conserved ''topohydrophobic'' positions
-
Poupon, A. and Mornon, J.P. (1998) Populations of hydrophobic amino acids within protein globular domains: identification of conserved ''topohydrophobic'' positions. Proteins, 33, 329-342.
-
(1998)
Proteins
, vol.33
, pp. 329-342
-
-
Poupon, A.1
Mornon, J.P.2
-
35
-
-
84856489442
-
HHblits: Lightning-fast iterative protein sequence searching by HMM-HMM alignment
-
Remmert, M. et al. (2011) HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat. Methods, 25, 173-175.
-
(2011)
Nat. Methods
, vol.25
, pp. 173-175
-
-
Remmert, M.1
-
36
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific
-
Rusch, D.B. et al. (2007) The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol., 5, e77.
-
(2007)
PLoS Biol.
, vol.5
-
-
Rusch, D.B.1
-
37
-
-
78449239049
-
Reading chromatin. Insights from yeast into YEATS domain structure and function
-
Schulze, J.M. et al. (2010) Reading chromatin. Insights from yeast into YEATS domain structure and function. Epigenetics, 5, 573-577.
-
(2010)
Epigenetics
, vol.5
, pp. 573-577
-
-
Schulze, J.M.1
-
38
-
-
4344710320
-
Structural biology sheds light on the puzzle of gen-omic ORFans
-
Siew, N. and Fischer, D. (2004) Structural biology sheds light on the puzzle of gen-omic ORFans. J. Mol. Biol., 342, 369-373.
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 369-373
-
-
Siew, N.1
Fischer, D.2
-
39
-
-
0031972784
-
The oncogenic capacity of HRX-ENL requires the tran-scriptional transactivation activity of ENL and the DNA binding motifs of HRX
-
Slany, R.K. et al. (1998) The oncogenic capacity of HRX-ENL requires the tran-scriptional transactivation activity of ENL and the DNA binding motifs of HRX. Mol. Cell. Biol., 18, 122-129.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 122-129
-
-
Slany, R.K.1
-
40
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
Soding, J. et al. (2005) The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res., 33, W244-W248.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Soding, J.1
-
41
-
-
81255192170
-
CBX8, a polycomb group protein, is essential for MLL-AF9-induced leukemogenesis
-
Tan, J. et al. (2011) CBX8, a polycomb group protein, is essential for MLL-AF9-induced leukemogenesis. Cancer Cell, 20, 563-575.
-
(2011)
Cancer Cell
, vol.20
, pp. 563-575
-
-
Tan, J.1
-
42
-
-
35848961668
-
How chromatin-binding modules interpret histone modifications: Lessons from professional pocket pickers
-
Taverna, S.D. et al. (2007) How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers. Nat. Struct. Mol. Biol., 14, 1025-1040.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 1025-1040
-
-
Taverna, S.D.1
-
43
-
-
0034674175
-
Estimating the number of protein folds and families from complete genome data
-
Wolf, Y.I. et al. (2000) Estimating the number of protein folds and families from complete genome data. J. Mol. Biol., 299, 897-905.
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 897-905
-
-
Wolf, Y.I.1
-
44
-
-
0026475673
-
Detection of secondary structure elements in proteins by hydrophobic cluster analysis
-
Woodcock, S. et al. (1992) Detection of secondary structure elements in proteins by hydrophobic cluster analysis. Protein Eng., 5, 629-635.
-
(1992)
Protein Eng.
, vol.5
, pp. 629-635
-
-
Woodcock, S.1
-
45
-
-
78549287139
-
Keeping it in the family: Diverse histone recognition by conserved structural folds
-
Yap, K.L. and Zhou, M.M. (2010) Keeping it in the family: diverse histone recognition by conserved structural folds. Crit. Rev. Biochem. Mol. Biol., 45, 488-505.
-
(2010)
Crit. Rev. Biochem. Mol. Biol.
, vol.45
, pp. 488-505
-
-
Yap, K.L.1
Zhou, M.M.2
-
46
-
-
17844386117
-
BLAP75, an essential component of Bloom's syndrome protein complexes that maintain genome integrity
-
Yin, J. et al. (2005) BLAP75, an essential component of Bloom's syndrome protein complexes that maintain genome integrity. EMBO J., 24, 1465-1476.
-
(2005)
EMBO J.
, vol.24
, pp. 1465-1476
-
-
Yin, J.1
-
47
-
-
24644514410
-
The eleven-nineteen-leukemia protein ENL connects nuclear MLL fusion partners with chromatin
-
Zeisig, D.T. et al. (2005) The eleven-nineteen-leukemia protein ENL connects nuclear MLL fusion partners with chromatin. Oncogene, 24, 5525-5532.
-
(2005)
Oncogene
, vol.24
, pp. 5525-5532
-
-
Zeisig, D.T.1
-
48
-
-
79955542044
-
Solution structure of the Taf14 YEATS domain and its roles in cell growth of Saccharomyces cerevisiae
-
Zhang, W. et al. (2011) Solution structure of the Taf14 YEATS domain and its roles in cell growth of Saccharomyces cerevisiae. Biochem. J., 436, 83-90.
-
(2011)
Biochem. J.
, vol.436
, pp. 83-90
-
-
Zhang, W.1
|