-
2
-
-
42149108423
-
Bioconversion of lignocellulosic biomass: biochemical and molecular perspectives
-
Kumar R, Singh S, Singh OV (2008) Bioconversion of lignocellulosic biomass: biochemical and molecular perspectives. J Ind Microbiol Biotechnol 35: 377-391.
-
(2008)
J Ind Microbiol Biotechnol
, vol.35
, pp. 377-391
-
-
Kumar, R.1
Singh, S.2
Singh, O.V.3
-
3
-
-
79953738065
-
Insights into the phylogeny and metabolic potential of a primary tropical peat swamp forest microbial community by metagenomic analysis
-
Kanokratana P, Uengwetwanit T, Rattanachomsri U, Bunterngsook B, Nimchua T, Tangphatsornruang S, Plengvidhya V, Champreda V, Eurwilaichitr L (2011) Insights into the phylogeny and metabolic potential of a primary tropical peat swamp forest microbial community by metagenomic analysis. Microb Ecol 61: 518-528.
-
(2011)
Microb Ecol
, vol.61
, pp. 518-528
-
-
Kanokratana, P.1
Uengwetwanit, T.2
Rattanachomsri, U.3
Bunterngsook, B.4
Nimchua, T.5
Tangphatsornruang, S.6
Plengvidhya, V.7
Champreda, V.8
Eurwilaichitr, L.9
-
4
-
-
36549000721
-
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
-
Warnecke F, Luginbuhl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, Cayouette M, McHardy AC, Djordjevic G, Aboushadi N, Sorek R, Tringe SG, Podar M, Martin HG, Kunin V, Dalevi D, Madejska J, Kirton E, Platt D, Szeto E, Salamov A, Barry K, Mikhailova N, Kyrpides NC, Matson EG, Ottesen EA, Zhang X, Hernandez M, Murillo C, Acosta LG, Rigoutsos I, Tamayo G, Green BD, Chang C, Rubin EM, Mathur EJ, Robertson DE, Hugenholtz P, Leadbetter JR (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nat 450: 560-565.
-
(2007)
Nat
, vol.450
, pp. 560-565
-
-
Warnecke, F.1
Luginbuhl, P.2
Ivanova, N.3
Ghassemian, M.4
Richardson, T.H.5
Stege, J.T.6
Cayouette, M.7
McHardy, A.C.8
Djordjevic, G.9
Aboushadi, N.10
Sorek, R.11
Tringe, S.G.12
Podar, M.13
Martin, H.G.14
Kunin, V.15
Dalevi, D.16
Madejska, J.17
Kirton, E.18
Platt, D.19
Szeto, E.20
Salamov, A.21
Barry, K.22
Mikhailova, N.23
Kyrpides, N.C.24
Matson, E.G.25
Ottesen, E.A.26
Zhang, X.27
Hernandez, M.28
Murillo, C.29
Acosta, L.G.30
Rigoutsos, I.31
Tamayo, G.32
Green, B.D.33
Chang, C.34
Rubin, E.M.35
Mathur, E.J.36
Robertson, D.E.37
Hugenholtz, P.38
Leadbetter, J.R.39
more..
-
5
-
-
49549107771
-
Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)
-
Dowd SE, Callaway TR, Wolcott RD, Sun Y, McKeehan T, Hagevoort RG, Edrington TS (2008) Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). BMC Microbiol 8: 125.
-
(2008)
BMC Microbiol
, vol.8
, pp. 125
-
-
Dowd, S.E.1
Callaway, T.R.2
Wolcott, R.D.3
Sun, Y.4
McKeehan, T.5
Hagevoort, R.G.6
Edrington, T.S.7
-
6
-
-
53449086190
-
Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use
-
Acosta-Martínez V, Dowd S, Sun Y, Allen V (2008) Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use. Soil Biol Biochem 40: 2762-2770.
-
(2008)
Soil Biol Biochem
, vol.40
, pp. 2762-2770
-
-
Acosta-Martínez, V.1
Dowd, S.2
Sun, Y.3
Allen, V.4
-
7
-
-
67649624739
-
Pyrosequencing of tagged 16S rRNA gene amplicons for rapid deciphering of the microbiomes of fermented foods such as pearl millet slurries
-
Humblot C, Guyot JP (2009) Pyrosequencing of tagged 16S rRNA gene amplicons for rapid deciphering of the microbiomes of fermented foods such as pearl millet slurries. Appl Environ Microbiol 75: 4354-4361.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4354-4361
-
-
Humblot, C.1
Guyot, J.P.2
-
8
-
-
78649670032
-
Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing
-
Callaway TR, Dowd SE, Edrington TS, Anderson RC, Krueger N, Bauer N, Kononoff PJ, Nisbet DJ (2010) Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing. J Anim Sci 88: 3977-3983.
-
(2010)
J Anim Sci
, vol.88
, pp. 3977-3983
-
-
Callaway, T.R.1
Dowd, S.E.2
Edrington, T.S.3
Anderson, R.C.4
Krueger, N.5
Bauer, N.6
Kononoff, P.J.7
Nisbet, D.J.8
-
9
-
-
61549100925
-
Life cycle assessment of bagasse waste management options
-
Kiatkittipong W, Wongsuchoto P, Pavasant P (2009) Life cycle assessment of bagasse waste management options. Waste Manag 29: 1628-1633.
-
(2009)
Waste Manag
, vol.29
, pp. 1628-1633
-
-
Kiatkittipong, W.1
Wongsuchoto, P.2
Pavasant, P.3
-
10
-
-
0034110702
-
Biotechnological potential of agro-industrial residues. I: sugarcane bagasse
-
Pandey A, Soccol CR, Nigam P, Soccol VT (2000) Biotechnological potential of agro-industrial residues. I: sugarcane bagasse. Bioresource Technol 74: 69-80.
-
(2000)
Bioresource Technol
, vol.74
, pp. 69-80
-
-
Pandey, A.1
Soccol, C.R.2
Nigam, P.3
Soccol, V.T.4
-
12
-
-
71149105539
-
Preservation of bagasse using microbial growth/ enzyme inhibitors as biotech preservatives
-
Yadav KR, Patil RP, Chaudhari AB, Sharma RK, Kothari RM (2005) Preservation of bagasse using microbial growth/ enzyme inhibitors as biotech preservatives. Indian J Chem Technol 12: 528-533.
-
(2005)
Indian J Chem Technol
, vol.12
, pp. 528-533
-
-
Yadav, K.R.1
Patil, R.P.2
Chaudhari, A.B.3
Sharma, R.K.4
Kothari, R.M.5
-
13
-
-
79952136797
-
Culture-independent phylogenetic analysis of the microbial community in industrial sugarcane bagasse feedstock piles
-
Rattanachomsri U, Kanokratana P, Eurwilaichitr L, Igarashi Y, Champreda V (2011) Culture-independent phylogenetic analysis of the microbial community in industrial sugarcane bagasse feedstock piles. Biosci Biotechnol Biochem 75: 232-239.
-
(2011)
Biosci Biotechnol Biochem
, vol.75
, pp. 232-239
-
-
Rattanachomsri, U.1
Kanokratana, P.2
Eurwilaichitr, L.3
Igarashi, Y.4
Champreda, V.5
-
15
-
-
11144298161
-
Diversity and abundance of bacteria and archaea in the Bor Khlueng hot spring in Thailand
-
Kanokratana P, Chanapan S, Pootanakit K, Eurwilaichitr L (2004) Diversity and abundance of bacteria and archaea in the Bor Khlueng hot spring in Thailand. J Basic Microbiol 44: 430-444.
-
(2004)
J Basic Microbiol
, vol.44
, pp. 430-444
-
-
Kanokratana, P.1
Chanapan, S.2
Pootanakit, K.3
Eurwilaichitr, L.4
-
16
-
-
34848920068
-
An efficient purification and fractionation of genomic DNA from soil by modified troughing method
-
Harnpicharnchai P, Thongaram T, Sriprang R, Champreda V, Tanapongpipat S, Eurwilaichitr L (2007) An efficient purification and fractionation of genomic DNA from soil by modified troughing method. Lett Appl Microbiol 45: 387-391.
-
(2007)
Lett Appl Microbiol
, vol.45
, pp. 387-391
-
-
Harnpicharnchai, P.1
Thongaram, T.2
Sriprang, R.3
Champreda, V.4
Tanapongpipat, S.5
Eurwilaichitr, L.6
-
17
-
-
0242384034
-
Review and re-analysis of domain-specific 16S primers
-
Baker GC, Smith JJ, Cowan DA (2003) Review and re-analysis of domain-specific 16S primers. J Microbiol Methods 55: 541-555.
-
(2003)
J Microbiol Methods
, vol.55
, pp. 541-555
-
-
Baker, G.C.1
Smith, J.J.2
Cowan, D.A.3
-
18
-
-
39449089394
-
Parallel tagged sequencing on the 454 platform
-
Meyer M, Stenzel U, Hofreiter M (2008) Parallel tagged sequencing on the 454 platform. Nat Protoc 3: 267-278.
-
(2008)
Nat Protoc
, vol.3
, pp. 267-278
-
-
Meyer, M.1
Stenzel, U.2
Hofreiter, M.3
-
19
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinforma 27: 2194-2200.
-
(2011)
Bioinforma
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
20
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
21
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, van Horn DJ, Weber CF (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
van Horn, D.J.14
Weber, C.F.15
-
23
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, de Crecy-Lagard V, Diaz N, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N, Linke B, McHardy AC, Meyer F, Neuweger H, Olsen G, Olson R, Osterman A, Portnoy V, Pusch GD, Rodionov DA, Ruckert C, Steiner J, Stevens R, Thiele I, Vassieva O, Ye Y, Zagnitko O, Vonstein V (2005) The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res 33: 5691-5702.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
Choudhuri, J.V.4
Chuang, H.Y.5
Cohoon, M.6
de Crecy-Lagard, V.7
Diaz, N.8
Disz, T.9
Edwards, R.10
Fonstein, M.11
Frank, E.D.12
Gerdes, S.13
Glass, E.M.14
Goesmann, A.15
Hanson, A.16
Iwata-Reuyl, D.17
Jensen, R.18
Jamshidi, N.19
Krause, L.20
Kubal, M.21
Larsen, N.22
Linke, B.23
McHardy, A.C.24
Meyer, F.25
Neuweger, H.26
Olsen, G.27
Olson, R.28
Osterman, A.29
Portnoy, V.30
Pusch, G.D.31
Rodionov, D.A.32
Ruckert, C.33
Steiner, J.34
Stevens, R.35
Thiele, I.36
Vassieva, O.37
Ye, Y.38
Zagnitko, O.39
Vonstein, V.40
more..
-
24
-
-
24644503098
-
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
-
Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinforma 21: 3674-3676.
-
(2005)
Bioinforma
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Gotz, S.2
Garcia-Gomez, J.M.3
Terol, J.4
Talon, M.5
Robles, M.6
-
25
-
-
58149200943
-
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics
-
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B (2009) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics. Nucleic Acids Res 37: D233-238.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cantarel, B.L.1
Coutinho, P.M.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
Henrissat, B.6
-
26
-
-
33745595097
-
Using pyrosequencing to shed light on deep mine microbial ecology
-
Edwards RA, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, Peterson DM, Saar MO, Alexander S, Alexander EC Jr, Rohwer F (2006) Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics 7: 57.
-
(2006)
BMC Genomics
, vol.7
, pp. 57
-
-
Edwards, R.A.1
Rodriguez-Brito, B.2
Wegley, L.3
Haynes, M.4
Breitbart, M.5
Peterson, D.M.6
Saar, M.O.7
Alexander, S.8
Alexander Jr., E.C.9
Rohwer, F.10
-
28
-
-
0035293037
-
Bacterial populations colonizing and degrading rice straw in anoxic paddy soil
-
Weber S, Stubner S, Conrad R (2001) Bacterial populations colonizing and degrading rice straw in anoxic paddy soil. Appl Environ Microbiol 67: 1318-1327.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 1318-1327
-
-
Weber, S.1
Stubner, S.2
Conrad, R.3
-
29
-
-
45249109316
-
Characterization of a novel thermophilic, cellulose-degrading bacterium Paenibacillus sp. strain B39
-
Wang CM, Shyu CL, Ho SP, Chiou SH (2008) Characterization of a novel thermophilic, cellulose-degrading bacterium Paenibacillus sp. strain B39. Lett Appl Microbiol 47: 46-53.
-
(2008)
Lett Appl Microbiol
, vol.47
, pp. 46-53
-
-
Wang, C.M.1
Shyu, C.L.2
Ho, S.P.3
Chiou, S.H.4
-
30
-
-
3142757398
-
Cellulosomes: plant-cell-wall-degrading enzyme complexes
-
Doi RH, Kosugi A (2004) Cellulosomes: plant-cell-wall-degrading enzyme complexes. Nat Rev Microbiol 2: 541-551.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 541-551
-
-
Doi, R.H.1
Kosugi, A.2
-
31
-
-
30344472390
-
Anaerobic bacterial degradation for the effective utilization of biomass
-
Ohmiya K, Sakka K, Kimura T (2005) Anaerobic bacterial degradation for the effective utilization of biomass. Biotechnol Bioproc E 10: 482-493.
-
(2005)
Biotechnol Bioproc E
, vol.10
, pp. 482-493
-
-
Ohmiya, K.1
Sakka, K.2
Kimura, T.3
-
32
-
-
1142298547
-
Architecture of the Bacteroides cellulosolvens cellulosome: description of a cell surface-anchoring scaffoldin and a family 48 cellulase
-
Xu Q, Bayer EA, Goldman M, Kenig R, Shoham Y, Lamed R (2004) Architecture of the Bacteroides cellulosolvens cellulosome: description of a cell surface-anchoring scaffoldin and a family 48 cellulase. J Bacteriol 186: 968-977.
-
(2004)
J Bacteriol
, vol.186
, pp. 968-977
-
-
Xu, Q.1
Bayer, E.A.2
Goldman, M.3
Kenig, R.4
Shoham, Y.5
Lamed, R.6
-
33
-
-
63849207489
-
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils
-
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J, Barabote RD, Bradley B, Brettin TS, Brinkac LM, Bruce D, Creasy T, Daugherty SC, Davidsen TM, DeBoy RT, Detter JC, Dodson RJ, Durkin AS, Ganapathy A, Gwinn-Giglio M, Han CS, Khouri H, Kiss H, Kothari SP, Madupu R, Nelson KE, Nelson WC, Paulsen I, Penn K, Ren Q, Rosovitz MJ, Selengut JD, Shrivastava S, Sullivan SA, Tapia R, Thompson LS, Watkins KL, Yang Q, Yu C, Zafar N, Zhou L, Kuske CR (2009) Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol 75: 2046-2056.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 2046-2056
-
-
Ward, N.L.1
Challacombe, J.F.2
Janssen, P.H.3
Henrissat, B.4
Coutinho, P.M.5
Wu, M.6
Xie, G.7
Haft, D.H.8
Sait, M.9
Badger, J.10
Barabote, R.D.11
Bradley, B.12
Brettin, T.S.13
Brinkac, L.M.14
Bruce, D.15
Creasy, T.16
Daugherty, S.C.17
Davidsen, T.M.18
DeBoy, R.T.19
Detter, J.C.20
Dodson, R.J.21
Durkin, A.S.22
Ganapathy, A.23
Gwinn-Giglio, M.24
Han, C.S.25
Khouri, H.26
Kiss, H.27
Kothari, S.P.28
Madupu, R.29
Nelson, K.E.30
Nelson, W.C.31
Paulsen, I.32
Penn, K.33
Ren, Q.34
Rosovitz, M.J.35
Selengut, J.D.36
Shrivastava, S.37
Sullivan, S.A.38
Tapia, R.39
Thompson, L.S.40
Watkins, K.L.41
Yang, Q.42
Yu, C.43
Zafar, N.44
Zhou, L.45
Kuske, C.R.46
more..
-
35
-
-
0037367068
-
Morphologies and phylogenetic classification of cellulolytic myxobacteria
-
Yan ZC, Wang B, Li YZ, Gong X, Zhang HQ, Gao PJ (2003) Morphologies and phylogenetic classification of cellulolytic myxobacteria. Syst Appl Microbiol 26: 104-109.
-
(2003)
Syst Appl Microbiol
, vol.26
, pp. 104-109
-
-
Yan, Z.C.1
Wang, B.2
Li, Y.Z.3
Gong, X.4
Zhang, H.Q.5
Gao, P.J.6
-
36
-
-
80052629618
-
Complex expression of the cellulolytic transcriptome of Saccharophagus degradans
-
Zhang H, Hutcheson SW (2011) Complex expression of the cellulolytic transcriptome of Saccharophagus degradans. Appl Environ Microbiol 77: 5591-5596.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 5591-5596
-
-
Zhang, H.1
Hutcheson, S.W.2
-
37
-
-
0033867966
-
Taxonomic, phylogenetic, and ecological diversity of methanogenic Archaea
-
Garcia JL, Patel BK, Ollivier B (2000) Taxonomic, phylogenetic, and ecological diversity of methanogenic Archaea. Anaerobe 6: 205-226.
-
(2000)
Anaerobe
, vol.6
, pp. 205-226
-
-
Garcia, J.L.1
Patel, B.K.2
Ollivier, B.3
-
38
-
-
45849142238
-
Biotechnological applications of acetic acid bacteria
-
Raspor P, Goranovic D (2008) Biotechnological applications of acetic acid bacteria. Crit Rev Biotechnol 28: 101-124.
-
(2008)
Crit Rev Biotechnol
, vol.28
, pp. 101-124
-
-
Raspor, P.1
Goranovic, D.2
-
39
-
-
77749274574
-
Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community
-
Allgaier M, Reddy A, Park JI, Ivanova N, D'haeseleer P, Lowry S, Sapra R, Hazen TC, Simmons BA, VanderGheynst JS, Hugenhotz P (2010) Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community. PLoS One 5: e8812.
-
(2010)
PLoS One
, vol.5
-
-
Allgaier, M.1
Reddy, A.2
Park, J.I.3
Ivanova, N.4
D'haeseleer, P.5
Lowry, S.6
Sapra, R.7
Hazen, T.C.8
Simmons, B.A.9
VanderGheynst, J.S.10
Hugenhotz, P.11
|