-
1
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature. 2004;431:931-945
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
2
-
-
45449096267
-
Tuning in to the signals: Noncoding sequence conservation in vertebrate genomes
-
Elgar G, Vavouri T. Tuning in to the signals: noncoding sequence conservation in vertebrate genomes. Trends Genet. 2008;24:344-352
-
(2008)
Trends Genet
, vol.24
, pp. 344-352
-
-
Elgar, G.1
Vavouri, T.2
-
3
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
DOI 10.1038/nmeth.1226, PII NMETH.1226
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods. 2008;5:621-628 (Pubitemid 351911867)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
4
-
-
77952148742
-
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
-
Guttman M, Garber M, Levin JZ, Donaghey J, Robinson J, Adiconis X, Fan L, Koziol MJ, Gnirke A, Nusbaum C, Rinn JL, Lander ES, Regev A. Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat Biotechnol. 2010;28:503-510
-
(2010)
Nat Biotechnol
, vol.28
, pp. 503-510
-
-
Guttman, M.1
Garber, M.2
Levin, J.Z.3
Donaghey, J.4
Robinson, J.5
Adiconis, X.6
Fan, L.7
Koziol, M.J.8
Gnirke, A.9
Nusbaum, C.10
Rinn, J.L.11
Lander, E.S.12
Regev, A.13
-
5
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 2011;25:1915-1927
-
(2011)
Genes Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
Koziol, M.4
Tazon-Vega, B.5
Regev, A.6
Rinn, J.L.7
-
6
-
-
38649114329
-
Specific expression of long noncoding RNAs in the mouse brain
-
DOI 10.1073/pnas.0706729105
-
Mercer TR, Dinger ME, Sunkin SM, Mehler MF, Mattick JS. Specific expression of long noncoding RNAs in the mouse brain. Proc Natl Acad Sci U S A. 2008;105:716-721 (Pubitemid 351171774)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.2
, pp. 716-721
-
-
Mercer, T.R.1
Dinger, M.E.2
Sunkin, S.M.3
Mehler, M.F.4
Mattick, J.S.5
-
7
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M, Amit I, Garber M, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature. 2009;458:223-227
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
-
8
-
-
79959756263
-
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
-
Hung T, Wang Y, Lin MF, et al. Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nat Genet. 2011;43:621-629
-
(2011)
Nat Genet
, vol.43
, pp. 621-629
-
-
Hung, T.1
Wang, Y.2
Lin, M.F.3
-
9
-
-
30044434769
-
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
-
DOI 10.1101/gr.4200206
-
Ravasi T, Suzuki H, Pang KC, Katayama S, Furuno M, Okunishi R, Fukuda S, Ru K, Frith MC, Gongora MM, Grimmond SM, Hume DA, Hayashizaki Y, Mattick JS. Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Res. 2006;16:11-19 (Pubitemid 43048929)
-
(2006)
Genome Research
, vol.16
, Issue.1
, pp. 11-19
-
-
Ravasi, T.1
Suzuki, H.2
Pang, K.C.3
Katayama, S.4
Furuno, M.5
Okunishi, R.6
Fukuda, S.7
Ru, K.8
Frith, M.C.9
Gongora, M.M.10
Grimmond, S.M.11
Hume, D.A.12
Hayashizaki, Y.13
Mattick, J.S.14
-
10
-
-
78751474118
-
Non-coding RNAs as regulators of embryogenesis
-
Pauli A, Rinn JL, Schier AF. Non-coding RNAs as regulators of embryogenesis. Nat Rev Genet. 2011;12:136-149
-
(2011)
Nat Rev Genet
, vol.12
, pp. 136-149
-
-
Pauli, A.1
Rinn, J.L.2
Schier, A.F.3
-
11
-
-
80052869283
-
LincRNAs act in the circuitry controlling pluripotency and differentiation
-
Guttman M, Donaghey J, Carey BW, et al. LincRNAs act in the circuitry controlling pluripotency and differentiation. Nature. 2011;477:295-300
-
(2011)
Nature
, vol.477
, pp. 295-300
-
-
Guttman, M.1
Donaghey, J.2
Carey, B.W.3
-
12
-
-
75149163987
-
Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells
-
Sheik Mohamed J, Gaughwin PM, Lim B, Robson P, Lipovich L. Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells. RNA. 2010;16:324-337
-
(2010)
RNA
, vol.16
, pp. 324-337
-
-
Sheik Mohamed, J.1
Gaughwin, P.M.2
Lim, B.3
Robson, P.4
Lipovich, L.5
-
13
-
-
50649118350
-
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation
-
Dinger ME, Amaral PP, Mercer TR, Pang KC, Bruce SJ, Gardiner BB, Askarian-Amiri ME, Ru K, Solda G, Simons C, Sunkin SM, Crowe ML, Grimmond SM, Perkins AC, Mattick JS. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Res. 2008;18:1433-1445
-
(2008)
Genome Res
, vol.18
, pp. 1433-1445
-
-
Dinger, M.E.1
Amaral, P.P.2
Mercer, T.R.3
Pang, K.C.4
Bruce, S.J.5
Gardiner, B.B.6
Askarian-Amiri, M.E.7
Ru, K.8
Solda, G.9
Simons, C.10
Sunkin, S.M.11
Crowe, M.L.12
Grimmond, S.M.13
Perkins, A.C.14
Mattick, J.S.15
-
14
-
-
0025961771
-
A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome
-
Brown CJ, Ballabio A, Rupert JL, Lafreniere RG, Grompe M, Tonlorenzi R, Willard HF. A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome. Nature. 1991;349:38-44 (Pubitemid 21912005)
-
(1991)
Nature
, vol.349
, Issue.6304
, pp. 38-44
-
-
Brown, C.J.1
Ballabio, A.2
Rupert, J.L.3
Lafreniere, R.G.4
Grompe, M.5
Tonlorenzi, R.6
Willard, H.F.7
-
15
-
-
84871069553
-
Epigenetic regulation by long noncoding RNAs
-
Lee JT. Epigenetic regulation by long noncoding RNAs. Science. 2012;338:1435-1439
-
(2012)
Science
, vol.338
, pp. 1435-1439
-
-
Lee, J.T.1
-
16
-
-
84875200257
-
Long noncoding RNAs: Cellular address codes in development and disease
-
Batista PJ, Chang HY. Long noncoding RNAs: cellular address codes in development and disease. Cell. 2013;152:1298-1307
-
(2013)
Cell
, vol.152
, pp. 1298-1307
-
-
Batista, P.J.1
Chang, H.Y.2
-
17
-
-
84873300214
-
Braveheart, a long noncoding RNA required for cardiovascular lineage commitment
-
Klattenhoff CA, Scheuermann JC, Surface LE, Bradley RK, Fields PA, Steinhauser ML, Ding H, Butty VL, Torrey L, Haas S, Abo R, Tabebordbar M, Lee RT, Burge CB, Boyer LA. Braveheart, a long noncoding RNA required for cardiovascular lineage commitment. Cell. 2013;152:570-583
-
(2013)
Cell
, vol.152
, pp. 570-583
-
-
Klattenhoff, C.A.1
Scheuermann, J.C.2
Surface, L.E.3
Bradley, R.K.4
Fields, P.A.5
Steinhauser, M.L.6
Ding, H.7
Butty, V.L.8
Torrey, L.9
Haas, S.10
Abo, R.11
Tabebordbar, M.12
Lee, R.T.13
Burge, C.B.14
Boyer, L.A.15
-
18
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
Derrien T, Johnson R, Bussotti G, et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 2012;22:1775-1789
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
-
19
-
-
78650681563
-
Mesp1: A key regulator of cardiovascular lineage commitment
-
Bondue A, Blanpain C. Mesp1: a key regulator of cardiovascular lineage commitment. Circ Res. 2010;107:1414-1427
-
(2010)
Circ Res
, vol.107
, pp. 1414-1427
-
-
Bondue, A.1
Blanpain, C.2
-
20
-
-
48649087364
-
Mesp1 acts as a master regulator of multipotent cardiovascular progenitor specification
-
Bondue A, Lapouge G, Paulissen C, Semeraro C, Iacovino M, Kyba M, Blanpain C. Mesp1 acts as a master regulator of multipotent cardiovascular progenitor specification. Cell Stem Cell. 2008;3:69-84
-
(2008)
Cell Stem Cell
, vol.3
, pp. 69-84
-
-
Bondue, A.1
Lapouge, G.2
Paulissen, C.3
Semeraro, C.4
Iacovino, M.5
Kyba, M.6
Blanpain, C.7
-
21
-
-
40249093060
-
MesP1 drives vertebrate cardiovascular differentiation through Dkk-1-mediated blockade of Wnt-signalling
-
DOI 10.1038/ncb1696, PII NCB1696
-
David R, Brenner C, Stieber J, Schwarz F, Brunner S, Vollmer M, Mentele E, Muller-Hocker J, Kitajima S, Lickert H, Rupp R, Franz WM. MesP1 drives vertebrate cardiovascular differentiation through Dkk-1-mediated blockade of Wnt-signalling. Nat Cell Biol. 2008;10:338-345 (Pubitemid 351331021)
-
(2008)
Nature Cell Biology
, vol.10
, Issue.3
, pp. 338-345
-
-
David, R.1
Brenner, C.2
Stieber, J.3
Schwarz, F.4
Brunner, S.5
Vollmer, M.6
Mentele, E.7
Muller-Hocker, J.8
Kitajima, S.9
Lickert, H.10
Rupp, R.11
Franz, W.-M.12
-
22
-
-
48649106835
-
Mesp1 coordinately regulates cardiovascular fate restriction and epithelial-mesenchymal transition in differentiating ESCs
-
Lindsley RC, Gill JG, Murphy TL, Langer EM, Cai M, Mashayekhi M, Wang W, Niwa N, Nerbonne JM, Kyba M, Murphy KM. Mesp1 coordinately regulates cardiovascular fate restriction and epithelial-mesenchymal transition in differentiating ESCs. Cell Stem Cell. 2008;3:55-68
-
(2008)
Cell Stem Cell
, vol.3
, pp. 55-68
-
-
Lindsley, R.C.1
Gill, J.G.2
Murphy, T.L.3
Langer, E.M.4
Cai, M.5
Mashayekhi, M.6
Wang, W.7
Niwa, N.8
Nerbonne, J.M.9
Kyba, M.10
Murphy, K.M.11
-
23
-
-
84864696029
-
Transcription factors ETS2 and MESP1 transdifferentiate human dermal fibroblasts into cardiac progenitors
-
Islas JF, Liu Y, Weng KC, Robertson MJ, Zhang S, Prejusa A, Harger J, Tikhomirova D, Chopra M, Iyer D, Mercola M, Oshima RG, Willerson JT, Potaman VN, Schwartz RJ. Transcription factors ETS2 and MESP1 transdifferentiate human dermal fibroblasts into cardiac progenitors. Proc Natl Acad Sci U S A. 2012;109:13016-13021
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 13016-13021
-
-
Islas, J.F.1
Liu, Y.2
Weng, K.C.3
Robertson, M.J.4
Zhang, S.5
Prejusa, A.6
Harger, J.7
Tikhomirova, D.8
Chopra, M.9
Iyer, D.10
Mercola, M.11
Oshima, R.G.12
Willerson, J.T.13
Potaman, V.N.14
Schwartz, R.J.15
-
24
-
-
84861904178
-
Genome regulation by long noncoding RNAs
-
Rinn JL, Chang HY. Genome regulation by long noncoding RNAs. Annu Rev Biochem. 2012;81:145-166
-
(2012)
Annu Rev Biochem
, vol.81
, pp. 145-166
-
-
Rinn, J.L.1
Chang, H.Y.2
-
25
-
-
55349109963
-
Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
-
Zhao J, Sun BK, Erwin JA, Song JJ, Lee JT. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science. 2008;322:750-756
-
(2008)
Science
, vol.322
, pp. 750-756
-
-
Zhao, J.1
Sun, B.K.2
Erwin, J.A.3
Song, J.J.4
Lee, J.T.5
-
26
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human hox loci by noncoding rnas
-
DOI 10.1016/j.cell.2007.05.022, PII S0092867407006599
-
Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, Goodnough LH, Helms JA, Farnham PJ, Segal E, Chang HY. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell. 2007;129:1311-1323 (Pubitemid 46962090)
-
(2007)
Cell
, vol.129
, Issue.7
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
Goodnough, L.H.7
Helms, J.A.8
Farnham, P.J.9
Segal, E.10
Chang, H.Y.11
-
27
-
-
77955321344
-
Direct reprogramming of fibroblasts into functional cardiomyocytes by defined factors
-
Ieda M, Fu JD, Delgado-Olguin P, Vedantham V, Hayashi Y, Bruneau BG, Srivastava D. Direct reprogramming of fibroblasts into functional cardiomyocytes by defined factors. Cell. 2010;142:375-386
-
(2010)
Cell
, vol.142
, pp. 375-386
-
-
Ieda, M.1
Fu, J.D.2
Delgado-Olguin, P.3
Vedantham, V.4
Hayashi, Y.5
Bruneau, B.G.6
Srivastava, D.7
-
28
-
-
84863629484
-
Vivo reprogramming of murine cardiac fibroblasts into induced cardiomyocytes
-
Qian L, Huang Y, Spencer CI, Foley A, Vedantham V, Liu L, Conway SJ, Fu JD, Srivastava D. In vivo reprogramming of murine cardiac fibroblasts into induced cardiomyocytes. Nature. 2012;485:593-598
-
(2012)
Nature
, vol.485
, pp. 593-598
-
-
Qian, L.1
Huang, Y.2
Spencer, C.I.3
Foley, A.4
Vedantham, V.5
Liu, L.6
Conway, S.J.7
Fu, J.D.8
Srivastava, D.9
-
29
-
-
84863626782
-
Heart repair by reprogramming non-myocytes with cardiac transcription factors
-
Song K, Nam YJ, Luo X, Qi X, Tan W, Huang GN, Acharya A, Smith CL, Tallquist MD, Neilson EG, Hill JA, Bassel-Duby R, Olson EN. Heart repair by reprogramming non-myocytes with cardiac transcription factors. Nature. 2012;485:599-604
-
(2012)
Nature
, vol.485
, pp. 599-604
-
-
Song, K.1
Nam, Y.J.2
Luo, X.3
Qi, X.4
Tan, W.5
Huang, G.N.6
Acharya, A.7
Smith, C.L.8
Tallquist, M.D.9
Neilson, E.G.10
Hill, J.A.11
Bassel-Duby, R.12
Olson, E.N.13
-
30
-
-
84861642380
-
MicroRNA-mediated in vitro and in vivo direct reprogramming of cardiac fibroblasts to cardiomyocytes
-
Jayawardena TM, Egemnazarov B, Finch EA, Zhang L, Payne JA, Pandya K, Zhang Z, Rosenberg P, Mirotsou M, Dzau VJ. MicroRNA-mediated in vitro and in vivo direct reprogramming of cardiac fibroblasts to cardiomyocytes. Circ Res. 2012;110:1465-1473
-
(2012)
Circ Res
, vol.110
, pp. 1465-1473
-
-
Jayawardena, T.M.1
Egemnazarov, B.2
Finch, E.A.3
Zhang, L.4
Payne, J.A.5
Pandya, K.6
Zhang, Z.7
Rosenberg, P.8
Mirotsou, M.9
Dzau, V.J.10
-
31
-
-
64249107059
-
Evidence for cardiomyocyte renewal in humans
-
Bergmann O, Bhardwaj RD, Bernard S, Zdunek S, Barnabe-Heider F, Walsh S, Zupicich J, Alkass K, Buchholz BA, Druid H, Jovinge S, Frisen J. Evidence for cardiomyocyte renewal in humans. Science. 2009;324:98-102
-
(2009)
Science
, vol.324
, pp. 98-102
-
-
Bergmann, O.1
Bhardwaj, R.D.2
Bernard, S.3
Zdunek, S.4
Barnabe-Heider, F.5
Walsh, S.6
Zupicich, J.7
Alkass, K.8
Buchholz, B.A.9
Druid, H.10
Jovinge, S.11
Frisen, J.12
-
32
-
-
34547699399
-
Evidence from a genetic fate-mapping study that stem cells refresh adult mammalian cardiomyocytes after injury
-
DOI 10.1038/nm1618, PII NM1618
-
Hsieh PC, Segers VF, Davis ME, MacGillivray C, Gannon J, Molkentin JD, Robbins J, Lee RT. Evidence from a genetic fate-mapping study that stem cells refresh adult mammalian cardiomyocytes after injury. Nat Med. 2007;13:970-974. (Pubitemid 47222045)
-
(2007)
Nature Medicine
, vol.13
, Issue.8
, pp. 970-974
-
-
Hsieh, P.C.H.1
Segers, V.F.M.2
Davis, M.E.3
MacGillivray, C.4
Gannon, J.5
Molkentin, J.D.6
Robbins, J.7
Lee, R.T.8
|