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Volumn 29, Issue 13, 2013, Pages 1687-1689

RUbioSeq: A suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses

Author keywords

[No Author keywords available]

Indexed keywords

HYDROGEN SULFITE; SULFITE;

EID: 84879946520     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt203     Document Type: Conference Paper
Times cited : (35)

References (14)
  • 1
    • 75949108066 scopus 로고    scopus 로고
    • Galaxy: A web-based genome analysis tool for experimentalists
    • Chapter 19, Unit 19.10.1-21
    • Blakenberg, D. et al. (2010) Galaxy: A web-based genome analysis tool for experimentalists. Curr. Protoc. Mol. Biol., Chapter 19, Unit 19.10.1-21.
    • (2010) Curr. Protoc. Mol. Biol.
    • Blakenberg, D.1
  • 2
    • 84856111163 scopus 로고    scopus 로고
    • NARWHAL, a primary analysis pipeline for NGS data
    • Brouwer, R.W. et al. (2012) NARWHAL, a primary analysis pipeline for NGS data. Bioinformatics, 28, 284-285.
    • (2012) Bioinformatics , vol.28 , pp. 284-285
    • Brouwer, R.W.1
  • 3
    • 40749109894 scopus 로고    scopus 로고
    • Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
    • Cokus, S.J. et al. (2008) Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature, 452, 215-219.
    • (2008) Nature , vol.452 , pp. 215-219
    • Cokus, S.J.1
  • 4
    • 79960405019 scopus 로고    scopus 로고
    • The variant call format and VCFtools
    • Danecek, P. et al. (2011) The variant call format and VCFtools. Bioinformatics, 27, 2156-2158.
    • (2011) Bioinformatics , vol.27 , pp. 2156-2158
    • Danecek, P.1
  • 5
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo, M. et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet., 43, 491-498.
    • (2011) Nat. Genet. , vol.43 , pp. 491-498
    • DePristo, M.1
  • 6
    • 84872757839 scopus 로고    scopus 로고
    • New mutations in chronic lymphocytic leukemia identified by target enrichment and deep sequencing
    • Domenech, E. et al. (2012) New mutations in chronic lymphocytic leukemia identified by target enrichment and deep sequencing. PLoS One, 7, e38158.
    • (2012) PLoS One , vol.7
    • Domenech, E.1
  • 7
    • 70450177746 scopus 로고    scopus 로고
    • BFAST: An alignment tool for large scale genome resequencing
    • Homer, N. et al. (2009) BFAST: An alignment tool for large scale genome resequencing. PLoS One, 4, e7767.
    • (2009) PLoS One , vol.4
    • Homer, N.1
  • 8
    • 84856498057 scopus 로고    scopus 로고
    • DNA methylome analysis using short bisulfite sequencing data
    • Krueger, F. et al. (2012) DNA methylome analysis using short bisulfite sequencing data. Nat. Methods, 9, 145-151.
    • (2012) Nat. Methods , vol.9 , pp. 145-151
    • Krueger, F.1
  • 9
    • 84857956783 scopus 로고    scopus 로고
    • Detecting and annotating genetic variations using the HugeSeq pipeline
    • Lam, H.Y. et al. (2012) Detecting and annotating genetic variations using the HugeSeq pipeline. Nat. Biotechnol., 30, 226-229.
    • (2012) Nat. Biotechnol. , vol.30 , pp. 226-229
    • Lam, H.Y.1
  • 10
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler Transform
    • Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 11
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map (SAM) format and SAMtools
    • Li, H. et al. (2009) The sequence alignment/map (SAM) format and SAMtools. Bioinformatics, 25, 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 12
    • 84861135980 scopus 로고    scopus 로고
    • Contra: Copy number analysis for targeted resequencing
    • Li, J. et al. (2012) CONTRA: Copy number analysis for targeted resequencing. Bioinformatics, 28, 1307-1313.
    • (2012) Bioinformatics , vol.28 , pp. 1307-1313
    • Li, J.1
  • 13
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • Lister, R. et al. (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature, 462, 315-322.
    • (2009) Nature , vol.462 , pp. 315-322
    • Lister, R.1
  • 14
    • 77955405475 scopus 로고    scopus 로고
    • Deriving the consequences of genomic variants with the Ensembl API and SNP Effect predictor
    • McLaren, W. et al. (2010) Deriving the consequences of genomic variants with the Ensembl API and SNP Effect predictor. BMC Bioinformatics, 26, 2069-2070.
    • (2010) BMC Bioinformatics , vol.26 , pp. 2069-2070
    • McLaren, W.1


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