메뉴 건너뛰기




Volumn 7, Issue 6, 2012, Pages

New mutations in chronic lymphocytic leukemia identified by target enrichment and deep sequencing

Author keywords

[No Author keywords available]

Indexed keywords

B LYMPHOCYTE RECEPTOR;

EID: 84872757839     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0038158     Document Type: Article
Times cited : (41)

References (35)
  • 1
    • 70350087567 scopus 로고    scopus 로고
    • Intrinsic and extrinsic factors influencing the clinical course of B-cell chronic lymphocytic leukemia: prognostic markers with pathogenetic relevance
    • Dal-Bo M, Bertoni F, Forconi F, Zucchetto A, Bomben R, et al. (2009) Intrinsic and extrinsic factors influencing the clinical course of B-cell chronic lymphocytic leukemia: prognostic markers with pathogenetic relevance. J Transl Med 7: 76.
    • (2009) J Transl Med , vol.7 , pp. 76
    • Dal-Bo, M.1    Bertoni, F.2    Forconi, F.3    Zucchetto, A.4    Bomben, R.5
  • 2
    • 34548128321 scopus 로고    scopus 로고
    • Molecular heterogeneity in chronic lymphocytic leukemia is dependent on BCR signaling: clinical correlation
    • Rodriguez A, Villuendas R, Yanez L, Gomez ME, Diaz R, et al. (2007) Molecular heterogeneity in chronic lymphocytic leukemia is dependent on BCR signaling: clinical correlation. Leukemia 21: 1984-1991.
    • (2007) Leukemia , vol.21 , pp. 1984-1991
    • Rodriguez, A.1    Villuendas, R.2    Yanez, L.3    Gomez, M.E.4    Diaz, R.5
  • 3
    • 6044254953 scopus 로고    scopus 로고
    • Variability in the degree of expression of phosphorylated IkappaBalpha in chronic lymphocytic leukemia cases with nodal involvement
    • Rodriguez A, Martinez N, Camacho FI, Ruiz-Ballesteros E, Algara P, et al. (2004) Variability in the degree of expression of phosphorylated IkappaBalpha in chronic lymphocytic leukemia cases with nodal involvement. Clin Cancer Res 10: 6796-6806.
    • (2004) Clin Cancer Res , vol.10 , pp. 6796-6806
    • Rodriguez, A.1    Martinez, N.2    Camacho, F.I.3    Ruiz-Ballesteros, E.4    Algara, P.5
  • 4
    • 73949099017 scopus 로고    scopus 로고
    • BCL6 modulates tonic BCR signaling in diffuse large B-cell lymphomas by repressing the SYK phosphatase, PTPROt
    • Juszczynski P, Chen L, O'Donnell E, Polo JM, Ranuncolo SM, et al. (2009) BCL6 modulates tonic BCR signaling in diffuse large B-cell lymphomas by repressing the SYK phosphatase, PTPROt. Blood 114: 5315-5321.
    • (2009) Blood , vol.114 , pp. 5315-5321
    • Juszczynski, P.1    Chen, L.2    O'Donnell, E.3    Polo, J.M.4    Ranuncolo, S.M.5
  • 6
    • 41149136296 scopus 로고    scopus 로고
    • Oncogenic CARD11 mutations in human diffuse large B cell lymphoma
    • Lenz G, Davis RE, Ngo VN, Lam L, George TC, et al. (2008) Oncogenic CARD11 mutations in human diffuse large B cell lymphoma. Science 319: 1676-1679.
    • (2008) Science , vol.319 , pp. 1676-1679
    • Lenz, G.1    Davis, R.E.2    Ngo, V.N.3    Lam, L.4    George, T.C.5
  • 7
    • 20144385604 scopus 로고    scopus 로고
    • Chronic lymphocytic leukemia B cells contain anomalous Lyn tyrosine kinase, a putative contribution to defective apoptosis
    • Contri A, Brunati AM, Trentin L, Cabrelle A, Miorin M, et al. (2005) Chronic lymphocytic leukemia B cells contain anomalous Lyn tyrosine kinase, a putative contribution to defective apoptosis. J Clin Invest 115: 369-378.
    • (2005) J Clin Invest , vol.115 , pp. 369-378
    • Contri, A.1    Brunati, A.M.2    Trentin, L.3    Cabrelle, A.4    Miorin, M.5
  • 8
    • 77649225756 scopus 로고    scopus 로고
    • Inhibition of NF-kappaB signaling by A20 through disruption of ubiquitin enzyme complexes
    • Shembade N, Ma A, Harhaj EW, (2010) Inhibition of NF-kappaB signaling by A20 through disruption of ubiquitin enzyme complexes. Science 327: 1135-1139.
    • (2010) Science , vol.327 , pp. 1135-1139
    • Shembade, N.1    Ma, A.2    Harhaj, E.W.3
  • 9
    • 2942584865 scopus 로고    scopus 로고
    • Chronic lymphocytic leukemia: revelations from the B-cell receptor
    • Stevenson FK, Caligaris-Cappio F, (2004) Chronic lymphocytic leukemia: revelations from the B-cell receptor. Blood 103: 4389-4395.
    • (2004) Blood , vol.103 , pp. 4389-4395
    • Stevenson, F.K.1    Caligaris-Cappio, F.2
  • 10
    • 76349089751 scopus 로고    scopus 로고
    • Anomalous constitutive Src kinase activity promotes B lymphoma survival and growth
    • Ke J, Chelvarajan RL, Sindhava V, Robertson DA, Lekakis L, et al. (2009) Anomalous constitutive Src kinase activity promotes B lymphoma survival and growth. Mol Cancer 8: 132.
    • (2009) Mol Cancer , vol.8 , pp. 132
    • Ke, J.1    Chelvarajan, R.L.2    Sindhava, V.3    Robertson, D.A.4    Lekakis, L.5
  • 11
    • 73849145729 scopus 로고    scopus 로고
    • Chronic active B-cell-receptor signalling in diffuse large B-cell lymphoma
    • Davis RE, Ngo VN, Lenz G, Tolar P, Young RM, et al. (2010) Chronic active B-cell-receptor signalling in diffuse large B-cell lymphoma. Nature 463: 88-92.
    • (2010) Nature , vol.463 , pp. 88-92
    • Davis, R.E.1    Ngo, V.N.2    Lenz, G.3    Tolar, P.4    Young, R.M.5
  • 12
    • 66649127621 scopus 로고    scopus 로고
    • Mutations of multiple genes cause deregulation of NF-kappaB in diffuse large B-cell lymphoma
    • Compagno M, Lim WK, Grunn A, Nandula SV, Brahmachary M, et al. (2009) Mutations of multiple genes cause deregulation of NF-kappaB in diffuse large B-cell lymphoma. Nature 459: 717-721.
    • (2009) Nature , vol.459 , pp. 717-721
    • Compagno, M.1    Lim, W.K.2    Grunn, A.3    Nandula, S.V.4    Brahmachary, M.5
  • 13
    • 77957731999 scopus 로고    scopus 로고
    • Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma
    • Jones S, Wang TL, Shih Ie M, Mao TL, Nakayama K, et al. (2010) Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma. Science 330: 228-231.
    • (2010) Science , vol.330 , pp. 228-231
    • Jones, S.1    Wang, T.L.2    Shih Ie, M.3    Mao, T.L.4    Nakayama, K.5
  • 14
    • 77955405475 scopus 로고    scopus 로고
    • Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
    • McLaren W, Pritchard B, Rios D, Chen Y, Flicek P, et al. (2010) Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. Bioinformatics 26: 2069-2070.
    • (2010) Bioinformatics , vol.26 , pp. 2069-2070
    • McLaren, W.1    Pritchard, B.2    Rios, D.3    Chen, Y.4    Flicek, P.5
  • 15
    • 33645507226 scopus 로고    scopus 로고
    • Strikingly homologous immunoglobulin gene rearrangements and poor outcome in VH3-21-using chronic lymphocytic leukemia patients independent of geographic origin and mutational status
    • Thorselius M, Krober A, Murray F, Thunberg U, Tobin G, et al. (2006) Strikingly homologous immunoglobulin gene rearrangements and poor outcome in VH3-21-using chronic lymphocytic leukemia patients independent of geographic origin and mutational status. Blood 107: 2889-2894.
    • (2006) Blood , vol.107 , pp. 2889-2894
    • Thorselius, M.1    Krober, A.2    Murray, F.3    Thunberg, U.4    Tobin, G.5
  • 16
    • 0030919034 scopus 로고    scopus 로고
    • A one-step DGGE scanning method for detection of mutations in the K-, N-, and H-ras oncogenes: Mutations at codons 12, 13 and 61 are rare in B-cell non-Hodgkin's lymphoma
    • Nedergaard T, Guldberg P, Ralfkiaer E, Zeuthen J, (1997) A one-step DGGE scanning method for detection of mutations in the K-, N-, and H-ras oncogenes: Mutations at codons 12, 13 and 61 are rare in B-cell non-Hodgkin's lymphoma. International Journal of Cancer 71: 364-369.
    • (1997) International Journal of Cancer , vol.71 , pp. 364-369
    • Nedergaard, T.1    Guldberg, P.2    Ralfkiaer, E.3    Zeuthen, J.4
  • 18
    • 0242391871 scopus 로고    scopus 로고
    • Inactivating I kappa B epsilon mutations in Hodgkin/Reed-Sternberg cells
    • Emmerich F, Theurich S, Hummel M, Haeffker A, Vry MS, et al. (2003) Inactivating I kappa B epsilon mutations in Hodgkin/Reed-Sternberg cells. J Pathol 201: 413-420.
    • (2003) J Pathol , vol.201 , pp. 413-420
    • Emmerich, F.1    Theurich, S.2    Hummel, M.3    Haeffker, A.4    Vry, M.S.5
  • 19
    • 84555171449 scopus 로고    scopus 로고
    • Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia
    • Quesada V, Conde L, Villamor N, Ordonez GR, Jares P, et al. (2011) Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia. Nat Genet 44: 47-52.
    • (2011) Nat Genet , vol.44 , pp. 47-52
    • Quesada, V.1    Conde, L.2    Villamor, N.3    Ordonez, G.R.4    Jares, P.5
  • 20
    • 77950926863 scopus 로고    scopus 로고
    • Proliferation centers in chronic lymphocytic leukemia: the niche where NF-kappaB activation takes place
    • Herreros B, Rodriguez-Pinilla SM, Pajares R, Martinez-Gonzalez MA, Ramos R, et al. (2010) Proliferation centers in chronic lymphocytic leukemia: the niche where NF-kappaB activation takes place. Leukemia 24: 872-876.
    • (2010) Leukemia , vol.24 , pp. 872-876
    • Herreros, B.1    Rodriguez-Pinilla, S.M.2    Pajares, R.3    Martinez-Gonzalez, M.A.4    Ramos, R.5
  • 21
    • 2442548829 scopus 로고    scopus 로고
    • Bruton's tyrosine kinase (Btk) enhances transcriptional co-activation activity of BAM11, a Btk-associated molecule of a subunit of SWI/SNF complexes
    • Hirano M, Kikuchi Y, Nisitani S, Yamaguchi A, Satoh A, et al. (2004) Bruton's tyrosine kinase (Btk) enhances transcriptional co-activation activity of BAM11, a Btk-associated molecule of a subunit of SWI/SNF complexes. Int Immunol 16: 747-757.
    • (2004) Int Immunol , vol.16 , pp. 747-757
    • Hirano, M.1    Kikuchi, Y.2    Nisitani, S.3    Yamaguchi, A.4    Satoh, A.5
  • 22
    • 77954603051 scopus 로고    scopus 로고
    • Requiem protein links RelB/p52 and the Brm-type SWI/SNF complex in a noncanonical NF-kappaB pathway
    • Tando T, Ishizaka A, Watanabe H, Ito T, Iida S, et al. (2010) Requiem protein links RelB/p52 and the Brm-type SWI/SNF complex in a noncanonical NF-kappaB pathway. J Biol Chem 285: 21951-21960.
    • (2010) J Biol Chem , vol.285 , pp. 21951-21960
    • Tando, T.1    Ishizaka, A.2    Watanabe, H.3    Ito, T.4    Iida, S.5
  • 23
    • 77957946398 scopus 로고    scopus 로고
    • ARID1A mutations in endometriosis-associated ovarian carcinomas
    • Wiegand KC, Shah SP, Al-Agha OM, Zhao Y, Tse K, et al. (2010) ARID1A mutations in endometriosis-associated ovarian carcinomas. N Engl J Med 363: 1532-1543.
    • (2010) N Engl J Med , vol.363 , pp. 1532-1543
    • Wiegand, K.C.1    Shah, S.P.2    Al-Agha, O.M.3    Zhao, Y.4    Tse, K.5
  • 24
    • 82255183148 scopus 로고    scopus 로고
    • Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer
    • Wang K, Kan J, Yuen ST, Shi ST, Chu KM, et al. (2011) Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer. Nat Genet 43: 1219-1223.
    • (2011) Nat Genet , vol.43 , pp. 1219-1223
    • Wang, K.1    Kan, J.2    Yuen, S.T.3    Shi, S.T.4    Chu, K.M.5
  • 25
    • 79551572835 scopus 로고    scopus 로고
    • Massive parallel DNA pyrosequencing analysis of the tumor suppressor BRG1/SMARCA4 in lung primary tumors
    • Rodriguez-Nieto S, Cañada A, Pros E, Pinto AI, Torres-Lanzas J, et al. (2010) Massive parallel DNA pyrosequencing analysis of the tumor suppressor BRG1/SMARCA4 in lung primary tumors. Human Mutation n/a-n/a.
    • (2010) Human Mutation
    • Rodriguez-Nieto, S.1    Cañada, A.2    Pros, E.3    Pinto, A.I.4    Torres-Lanzas, J.5
  • 26
    • 42949178435 scopus 로고    scopus 로고
    • Frequent BRG1/SMARCA4-inactivating mutations in human lung cancer cell lines
    • Medina PP, Romero OA, Kohno T, Montuenga LM, Pio R, et al. (2008) Frequent BRG1/SMARCA4-inactivating mutations in human lung cancer cell lines. Hum Mutat 29: 617-622.
    • (2008) Hum Mutat , vol.29 , pp. 617-622
    • Medina, P.P.1    Romero, O.A.2    Kohno, T.3    Montuenga, L.M.4    Pio, R.5
  • 27
    • 33847038352 scopus 로고    scopus 로고
    • Association of protein kinase C-[delta] with the B cell antigen receptor complex
    • Pracht C, Minguet S, Leitges M, Reth M, Huber M, (2007) Association of protein kinase C-[delta] with the B cell antigen receptor complex. Cellular Signalling 19: 715-722.
    • (2007) Cellular Signalling , vol.19 , pp. 715-722
    • Pracht, C.1    Minguet, S.2    Leitges, M.3    Reth, M.4    Huber, M.5
  • 28
    • 0142149014 scopus 로고    scopus 로고
    • A novel interaction between protein kinase D and TNF receptor-associated factor molecules regulates B cell receptor-CD40 synergy
    • Haxhinasto SA, Bishop GA, (2003) A novel interaction between protein kinase D and TNF receptor-associated factor molecules regulates B cell receptor-CD40 synergy. J Immunol 171: 4655-4662.
    • (2003) J Immunol , vol.171 , pp. 4655-4662
    • Haxhinasto, S.A.1    Bishop, G.A.2
  • 29
    • 79960036578 scopus 로고    scopus 로고
    • Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia
    • Puente XS, Pinyol M, Quesada V, Conde L, Ordonez GR, et al. (2011) Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia. Nature 475: 101-105.
    • (2011) Nature , vol.475 , pp. 101-105
    • Puente, X.S.1    Pinyol, M.2    Quesada, V.3    Conde, L.4    Ordonez, G.R.5
  • 30
    • 79960353160 scopus 로고    scopus 로고
    • Analysis of the chronic lymphocytic leukemia coding genome: role of NOTCH1 mutational activation
    • Fabbri G, Rasi S, Rossi D, Trifonov V, Khiabanian H, et al. (2011) Analysis of the chronic lymphocytic leukemia coding genome: role of NOTCH1 mutational activation. J Exp Med 208: 1389-1401.
    • (2011) J Exp Med , vol.208 , pp. 1389-1401
    • Fabbri, G.1    Rasi, S.2    Rossi, D.3    Trifonov, V.4    Khiabanian, H.5
  • 31
    • 84855370035 scopus 로고    scopus 로고
    • SF3B1 and other novel cancer genes in chronic lymphocytic leukemia
    • Wang L, Lawrence MS, Wan Y, Stojanov P, Sougnez C, et al. (2011) SF3B1 and other novel cancer genes in chronic lymphocytic leukemia. N Engl J Med 365: 2497-2506.
    • (2011) N Engl J Med , vol.365 , pp. 2497-2506
    • Wang, L.1    Lawrence, M.S.2    Wan, Y.3    Stojanov, P.4    Sougnez, C.5
  • 32
    • 0029981025 scopus 로고    scopus 로고
    • National Cancer Institute-sponsored Working Group guidelines for chronic lymphocytic leukemia: revised guidelines for diagnosis and treatment
    • Cheson BD, Bennett JM, Grever M, Kay N, Keating MJ, et al. (1996) National Cancer Institute-sponsored Working Group guidelines for chronic lymphocytic leukemia: revised guidelines for diagnosis and treatment. Blood 87: 4990-4997.
    • (1996) Blood , vol.87 , pp. 4990-4997
    • Cheson, B.D.1    Bennett, J.M.2    Grever, M.3    Kay, N.4    Keating, M.J.5
  • 33
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 34
    • 70450177746 scopus 로고    scopus 로고
    • BFAST: an alignment tool for large scale genome resequencing
    • Homer N, Merriman B, Nelson SF, (2009) BFAST: an alignment tool for large scale genome resequencing. PLoS One 4: e7767.
    • (2009) PLoS One , vol.4
    • Homer, N.1    Merriman, B.2    Nelson, S.F.3
  • 35
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43: 491-498.
    • (2011) Nat Genet , vol.43 , pp. 491-498
    • DePristo, M.A.1    Banks, E.2    Poplin, R.3    Garimella, K.V.4    Maguire, J.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.