Geodermatophilus normandii sp. nov., isolated from Saharan desert sand

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART9, 2013, Pages 3437-3443

  Montero Calasanz, Maria del Carmen ^a,b   Göker, Markus ^a   Pötter, Gabriele ^a   Rohde, Manfred ^c   Spröer, Cathrin ^a   Schumann, Peter ^a   Gorbushina, Anna A ^d,e   Klenk, Hans Peter ^a  

^a LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^b IFAPA CENTRO EL TORUÑO   (Spain)

^c HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

^d BAM FEDERAL INSTITUTE FOR MATERIALS RESEARCH AND TESTING   (Germany)

^e FREIE UNIVERSITÄT BERLIN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; GALACTOSE; MENAQUINONE; PEPTIDOGLYCAN; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLINOSITOL; PHOSPHOLIPID; RNA 16S;

ARTICLE; BACTERIUM ISOLATION; DESERT; GENE SEQUENCE; GENETIC IDENTIFICATION; GENOME; GEODERMATOPHILUS NORMANDII; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PRIORITY JOURNAL; SAND;

ACTINOMYCETALES; AFRICA, NORTHERN; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHAD; DESERT CLIMATE; DIAMINOPIMELIC ACID; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PEPTIDOGLYCAN; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SILICON DIOXIDE; SOIL MICROBIOLOGY; VITAMIN K 2;

EID: 84879859997     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.051201-0     Document Type: Article

References (45)

1. Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17, 540-552.
2. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
3. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
4. Giongo, A., Favet, J., Lapanje, A., Gano, K. A., Kennedy, S., Davis-Richardson, A. G., Brown, C., Beck, A., Farmerie, W. G. & other authors (2013). Microbial hitchhikers on intercontinental dust: highthroughput sequencing to catalogue microbes in small sand samples. Aerobiologia 29, 71-84.
5. Gordon, R. E. & Smith, M. M. (1955). Proposed group of characters for the separation of Streptomyces and Nocardia. J Bacteriol 69, 147-150.
6. Gregersen, T. (1978). Rapid method for distinction of Gram-negative from positive bacteria. Appl Microbiol Biotechnol 5, 123-127.
7. Hess, P. N. & De Moraes Russo, C. A. (2007). An empirical test of the midpoint rooting method. Biol J Linn Soc Lond 92, 669-674.
8. Huss, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
9. Ishiguro, E. E. & Wolfe, R. S. (1970). Control of morphogenesis in Geodermatophilus: ultrastructural studies. J Bacteriol 104, 566-580.
10. T). Stand Genomic Sci 2, 158-167.
11. Jin, L., Lee, H. G., Kim, H. S., Ahn, C. Y. & Oh, H. M. (2013). Geodermatophilus soli sp. nov. and Geodermatophilus terrae sp. nov., two novel actinobacteria isolated from grass soil. Int J Syst Bacteriol 63, 2625-2629.
12. Kroppenstedt, R. M. (1982). Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger. J Liq Chromatogr 5, 2359-2367.
13. Kroppenstedt, R. M. & Goodfellow, M. (2006). The family Thermomonosporaceae: Actinocorallia, Actinomadura, Spirillospora and Thermomonospora. In The Prokaryotes, 3rd edn, vol. 3, pp. 682-724. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
14. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
15. Lee, C., Grasso, C. & Sharlow, M. F. (2002). Multiple sequence alignment using partial order graphs. Bioinformatics 18, 452-464.
16. Luedemann, G. M. (1968). Geodermatophilus, a new genus of the Dermatophilaceae (Actinomycetales). J Bacteriol 96, 1848-1858.
17. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
18. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, K. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
19. Montero-Calasanz, M. C., Göker, M., Pötter, G., Rohde, M., Spröer, C., Schumann, P., Gorbushina, A. A. & Klenk, H.-P. (2012). Geodermatophilus arenarius sp. nov., a xerophilic actinomycete isolated from Saharan desert sand in Chad. Extremophiles 16, 903-909.
20. Montero-Calasanz, M. C., Göker, M., Broughton, W. J., Cattaneo, A., Favet, J., Pötter, G., Rohde, M., Spröer, C., Schumann, P. & other authors (2013a). Geodermatophilus tzadiensis sp. nov., a UV radiation-resistant bacterium isolated from sand of the Saharan desert. Syst Appl Microbiol 36, 177-182.
21. Montero-Calasanz, M. C., Göker, M., Pötter, G., Rohde, M., Spröer, C., Schumann, P., Gorbushina, A. A. & Klenk, H.-P. (2013b). Geodermatophilus arenarius sp. nov. In List of New Names and New Combinations Previously Effectively, but not Validly, Published, Validation List no. 150. Int J Syst Evol Microbiol 63, 797-798.
22. Montero-Calasanz, M. C., Göker, M., Pötter, G., Rohde, M., Spröer, C., Schumann, P., Gorbushina, A. A. & Klenk, H.-P. (2013c). Geodermatophilus saharensis sp. nov. In List of New Names and New Combinations Previously Effectively, but not Validly, Published, Validation List no. 151. Int J Syst Evol Microbiol 63, 1577-1580.
23. Montero-Calasanz, M. C., Göker, M., Pötter, G., Rohde, M., Spröer, C., Schumann, P., Gorbushina, A. A. & Klenk, H.-P. (2013d). Geodermatophilus saharensis sp. nov., isolated from sand of the Saharan desert in Chad. Arch Microbiol 195, 153-159.
24. Montero-Calasanz, M. C., Göker, M., Pötter, G., Rohde, M., Spröer, C., Schumann, P., Klenk, H.-P. & Gorbushina, A. A. (2013e). Geodermatophilus telluris sp. nov., an actinomycete isolated from Saharan desert sand. Int J Syst Evol Microbiol 63, 2254-2259.
25. Montero-Calasanz, M. C., Göker, M., Rohde, M., Schumann, P., Pötter, G., Spröer, C., Gorbushina, A. A. & Klenk, H.-P. (2013f). Geodermatophilus siccatus sp. nov. In List of New Names and New Combinations Previously Effectively, but not Validly, Published, Validation List no. 151. Int J Syst Evol Microbiol 63, 1577-1580.
26. Montero-Calasanz, M. C., Göker, M., Rohde, M., Schumann, P., Pötter, G., Spröer, C., Gorbushina, A. A. & Klenk, H.-P. (2013g). Geodermatophilus siccatus sp. nov., isolated from arid sand of the Saharan desert in Chad. Antonie van Leeuwenhoek 103, 449-456.
27. Nie, G. X., Ming, H., Li, S., Zhou, E. M., Cheng, J., Yu, T. T., Zhang, J., Feng, H. G., Tang, S. K. & Li, W. J. (2012). Geodermatophilus nigrescens sp. nov., isolated from a dry-hot valley. Antonie van Leeuwenhoek 101, 811-817.
28. Normand, P. (2006). Geodermatophilaceae fam. nov., a formal description. Int J Syst Evol Microbiol 56, 2277-2278.
29. Normand, P., Orso, S., Cournoyer, B., Jeannin, P., Chapelon, C., Dawson, J., Evtushenko, L. & Misra, A. K. (1996). Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae. Int J Syst Bacteriol 46, 1-9.
30. Pattengale, N. D., Alipour, M., Bininda-Emonds, O. R. P., Moret, B. M. E. & Stamatakis, A. (2009). How many bootstrap replicates are necessary? In Research in Computational Molecular Biology (Lecture Notes in Computer Science vol. 5541), 184-200 Edited by S. Batzoglou. Berlin: Springer.
31. Pelczar, M. J., Jr (editor) (1957). Manual of Microbiological Methods. New York: McGraw-Hill.
32. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
33. Rice, P., Longden, I. & Bleasby, A. (2000). emboss: the European molecular biology open software suite. Trends Genet 16, 276-277.
34. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
35. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
36. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
37. Skerman, V. B. D., McGowan, V. & Sneath, P. H. A. (1980). Approved Lists of Bacterial Names. Int J Syst Bacteriol 30, 225-420.
38. Stamatakis, A., Hoover, P. & Rougemont, J. (2008). A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol 57, 758-771.
39. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
40. Swofford, D. L. (2002). paup*: Phylogenetic analysis using parsimony (and other methods), version 4.0 b10. Sunderland, MA: Sinauer Associates.
41. Urzì, C., Brusetti, L., Salamone, P., Sorlini, C., Stackebrandt, E. & Daffonchio, D. (2001). Biodiversity of Geodermatophilaceae isolated from altered stones and monuments in the Mediterranean basin. Environ Microbiol 3, 471-479.
42. Urzì, C., La Cono, V. & Stackebrandt, E. (2004). Design and application of two oligonucleotide probes for the identification of Geodermatophilaceae strains using fluorescence in situ hybridization (FISH). Environ Microbiol 6, 678-685.
43. Vaas, L. A. I., Sikorski, J., Michael, V., Göker, M. & Klenk, H.-P. (2012). Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics. PLoS ONE 7, e34846.
44. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
45. Zhang, Y.-Q., Chen, J., Liu, H.-Y., Zhang, Y.-Q., Li, W.-J. & Yu, L.-Y. (2011). Geodermatophilus ruber sp. nov., isolated from rhizosphere soil of a medicinal plant. Int J Syst Evol Microbiol 61, 190-193.