Geodermatophilus soli sp. nov. and Geodermatophilus terrae sp. nov., two actinobacteria isolated from grass soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART7, 2013, Pages 2625-2629

  Jin, Long ^a   Lee, Hyung Gwan ^a   Kim, Hee Sik ^a   Ahn, Chi Yong ^a   Oh, Hee Mock ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

DIAMINO ACID; DIAMINOPIMELIC ACID; FATTY ACID; GENOMIC DNA; MENAQUINONE; PEPTIDOGLYCAN; RNA 16S;

ACTINOBACTERIA; ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATION; CELL MOTILITY; CELL STRUCTURE; DNA DNA HYBRIDIZATION; ENZYME ACTIVITY; GENE SEQUENCE; GEODERMATOPHILUS SOLI; GEODERMATOPHILUS TERRAE; GRASS; MICROBIAL IDENTIFICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SOIL;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DIAMINOPIMELIC ACID; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POACEAE; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; VITAMIN K 2;

ACTINOBACTERIA; GEODERMATOPHILUS;

EID: 84879816269     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.048892-0     Document Type: Article

References (27)

1. Bates, R. G. & Bower, V. E. (1956). Alkaline solutions for pH control. Anal Chem 28, 1322-1324.
2. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
3. Felsenstein, J. (1985). Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
4. Gomori, G. (1955). Preparation of buffers for use in enzyme studies. Methods Enzymol 1, 138-146.
5. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
6. Ivanova, N., Sikorski, J., Jando, M., Munk, C., Lapidus, A., Glavina Del Rio, T., Copeland, A., Tice, H., Cheng, J.-F. & other authors (2010). Complete genome sequence of Geodermatophilus obscurus type strain (G-20). Stand Genomic Sci 2, 158-167.
7. Jordal, P. B., Dueholm, M. S., Larsen, P., Petersen, S. V., Enghild, J. J., Christiansen, G., Højrup, P., Nielsen, P. H. & Otzen, D. E. (2009). Widespread abundance of functional bacterial amyloid in mycolata and other Gram-positive bacteria. Appl Environ Microbiol 75, 4101-4110.
8. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
9. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
10. Kudukhashvili, P. G., Gurielidze, M. A. & Pataraya, D. T. (2001). Study of the lytic activities of actinomycetes isolated from different soils in Georgia. Appl Biochem Microbiol 37, 251-252.
11. Kuhlman, K. R., Allenbach, L. B., Ball, C. L., Fusco, W. G., La Duc, M. T., Kuhlman, G. M., Anderson, R. C., Stuecker, T., Erickson, I. K. & other authors (2005). Enumeration, isolation, and characterization of ultraviolet (UV-C) resistant bacteria from rock varnish in the Whipple Mountains, California. Icarus 174, 585-595.
12. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
13. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
14. Luedemann, G. M. (1968). Geodermatophilus, a new genus of the Dermatophilaceae (Actinomycetales). J Bacteriol 96, 1848-1858.
15. Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104-117.
16. Montero-Calasanz, M. C., Göker, M., Pötter, G., Rohde, M., Spröer, C., Schumann, P., Gorbushina, A. A. & Klenk, H.-P. (2012a). Geodermatophilus arenarius sp. nov., a xerophilic actinomycete isolated from Saharan desert sand in Chad. Extremophiles 16, 903-909.
17. Montero-Calasanz, M. C., Göker, M., Rohde, M., Schumann, P., Pötter, G., Spröer, C., Gorbushina, A. A. & Klenk, H.-P. (2012b). Geodermatophilus siccatus sp. nov., isolated from arid sand of the Saharan desert in Chad. Antonie van Leeuwenhoek. 195, 153-159.
18. Montero-Calasanz, M. D., Göker, M., Pötter, G., Rohde, M., Spröer, C., Schumann, P., Klenk, H.-P. & Gorbushina, A. A. (2012c). Geodermatophilus telluris sp. nov., a novel actinomycete isolated from Saharan desert sand in Chad. Int J Syst Evol Microbiol. 63, 2254-2259.
19. Nie, G.-X., Ming, H., Li, S., Zhou, E.-M., Cheng, J., Yu, T.-T., Zhang, J., Feng, H.-G., Tang, S.-K. & Li, W.-J. (2012). Geodermatophilus nigrescens sp. nov., isolated from a dry-hot valley. Antonie van Leeuwenhoek 101, 811-817.
20. Normand, P. (2006). Geodermatophilaceae fam. nov., a formal description. Int J Syst Evol Microbiol 56, 2277-2278.
21. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
22. Sasser, M. (1990). Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
23. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phased high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
24. Tarrand, J. J. & Gröschel, D. H. M. (1982). Rapid, modified oxidase test for oxidase-variable bacterial isolates. J Clin Microbiol 16, 772-774.
25. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
26. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
27. Zhang, Y. Q., Chen, J., Liu, H. Y., Zhang, Y. Q., Li, W. J. & Yu, L. Y. (2011). Geodermatophilus ruber sp. nov., isolated from rhizosphere soil of a medicinal plant. Int J Syst Evol Microbiol 61, 190-193.