Azospirillum humicireducens sp. nov., a nitrogen-fixing bacterium isolated from a microbial fuel cell

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART7, 2013, Pages 2618-2624

  Zhou, Shungui ^a   Han, Luchao ^a,b   Wang, Yueqiang ^a   Yang, Guiqin ^a   Li, Zhuang ^a   Hu, Pei ^b  

^a GUANGDONG INSTITUTE OF ECO ENVIRONMENTAL AND SOIL SCIENCES   (China)

^b SICHUAN NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; UBIQUINONE;

ALPHAPROTEOBACTERIA; ARTICLE; AZOSPIRILLUM; AZOSPIRILLUM HUMICIREDUCENS; AZOSPIRILLUM LIPOFERUM; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CELL DENSITY; CELL STRUCTURE; CHEMOTAXONOMY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GENE SEQUENCE; MICROBIAL FUEL CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; PH; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RHODOSPIRILLACEAE; SEQUENCE ANALYSIS;

AZOSPIRILLUM; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BIOELECTRIC ENERGY SOURCES; CHINA; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NITROGEN FIXATION; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; UBIQUINONE;

ALPHAPROTEOBACTERIA; AZOSPIRILLUM; AZOSPIRILLUM LIPOFERUM; AZOSPIRILLUM ORYZAE; BACTERIA (MICROORGANISMS); NEGIBACTERIA; RHODOSPIRILLACEAE;

EID: 84879827244     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.046813-0     Document Type: Article

References (37)

1. Ben Dekhil, S., Cahill, M., Stackebrandt, E. & Sly, L. I. (1997). Transfer of Conglomeromonas largomobilis subsp. largomobilis to the genus Azospirillum as Azopirillum largomobile comb. nov, and elevation of Conglomeromonas largomobilis subsp parooensis to the new type species of Conglomeromonas, Conglomeromonas parooensis sp. nov. Syst Appl Microbiol 20, 72-77.
2. Burris, R. H. (1972). Nitrogen fixation-assay methods and techniques. Methods Enzymol 24, 415-431.
3. Cervantes, F. J., de Bok, F. A. M., Duong-Dac, T., Stams, A. J. M., Lettinga, G. & Field, J. A. (2002). Reduction of humic substances by halorespiring, sulphate-reducing and methanogenic microorganisms. Environ Microbiol 4, 51-57.
4. Coates, J. D., Ellis, D. J., Blunt-Harris, E. L., Gaw, C. V., Roden, E. E. & Lovley, D. R. (1998). Recovery of humic-reducing bacteria from a diversity of environments. Appl Environ Microbiol 64, 1504-1509.
5. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
6. Dobereiner, J. (1983). Ten years of Azospirillum. In Azospirillum II: Genetics, Physiology, Ecology, pp. 9-23. Edited by W. Klingmueller. Basel: Birkhaeuser.
7. Doetsch, R. N. (1981). Determinative methods of light microscopy. In Manual of Methods for General Bacteriology, pp. 21-33. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Philips. Washington, DC: American Society for Microbiology.
8. Dong, X. & Cai, M. (2001). Manual of Systematic and Determinative Bacteriology. Beijing, China: Academic Press.
9. Eckert, B., Weber, O. B., Kirchhof, G., Halbritter, A., Stoffels, M. & Hartmann, A. (2001). Azospirillum doebereinerae sp. nov., a nitrogenfixing bacterium associated with the C4-grass Miscanthus. Int J Syst Evol Microbiol 51, 17-26.
10. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane-filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
11. Fedorov, D. N., Ivanova, E. G., Doronina, N. V. & Trotsenko, IuA. (2008). [A new system of degenerate-oligonucleotide primers for detection and amplification of nifHD genes]. Mikrobiologiia 77, 286-288 (in Russian).
12. Field, J. A. & Cervantes, F. J. (2005). Microbial redox reactions mediated by humus and structurally related quinones. In Use of Humic Substances to Remediate Polluted Environments: From Theory to Practice (NATO Science Series vol. 52), pp. 343-352. Edited by I. V. Perminova, K. Hatfield N. Hertkorn. Dordrecht: Springer.
13. V. Perminova, K. Hatfield & N. Hertkorn. Dordrecht: Springer. Hong, Y. G., Guo, J., Xu, Z. C., Xu, M. Y. & Sun, G. P. (2007). Humic substances act as electron acceptor and redox mediator for microbial dissimilatory azoreduction by Shewanella decolorationis S12. J Microbiol Biotechnol 17, 428-437.
14. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
15. Lavrinenko, K., Chernousova, E., Gridneva, E., Dubinina, G., Akimov, V., Kuever, J., Lysenko, A. & Grabovich, M. (2010). Azospirillum thiophilum sp. nov., a diazotrophic bacterium isolated from a sulfide spring. Int J Syst Evol Microbiol 60, 2832-2837.
16. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
17. Li, X. M., Zhou, S. G., Li, F. B., Wu, C. Y., Zhuang, L., Xu, W. & Liu, L. (2009). Fe(III) oxide reduction and carbon tetrachloride dechlorination by a newly isolated Klebsiella pneumoniae strain L17. J Appl Microbiol 106, 130-139.
18. Lin, S. Y., Young, C. C., Hupfer, H., Siering, C., Arun, A. B., Chen, W. M., Lai, W. A., Shen, F. T., Rekha, P. D. & Yassin, A. F. (2009). Azospirillum picis sp. nov., isolated from discarded tar. Int J Syst Evol Microbiol 59, 761-765.
19. Lovley, D. R. & Phillips, E. J. P. (1988). Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese. Appl Environ Microbiol 54, 1472-1480.
20. Lovley, D. R., Coates, J. D., Blunt-Harris, E. L., Phillips, F. J. P. & Woodward, J. C. (1996). Humic substances as electron acceptors for microbial respiration. Nature 382, 445-448.
21. Marusina, A., Boulygina, E., Kuznetsov, B., Tourova, T., Kravchenko, I. & Gal'chenko, V. (2001). A system of oligonucleotide primers for the amplification of nifH genes of different taxonomic groups of prokaryotes. Microbiology 70, 73-78.
22. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
23. Okon, Y. (1985). Azospirillum as a potential inoculant for agriculture. Trends Biotechnol 3, 223-228.
24. Peng, G. X., Wang, H. R., Zhang, G. X., Hou, W., Liu, Y., Wang, E. T. & Tan, Z. Y. (2006). Azospirillum melinis sp. nov., a group of diazotrophs isolated from tropical molasses grass. Int J Syst Evol Microbiol 56, 1263-1271.
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
26. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
27. Schlegel, H. G., Lafferty, R. & Krauss, I. (1970). The isolation of mutants not accumulating poly-b-hydroxybutyric acid. Arch Mikrobiol 71, 283-294.
28. Straub, K. L., Kappler, A. & Schink, B. (2005). Enrichment and isolation of ferric-iron-and humic-acid-reducing bacteria. Methods Enzymol 397, 58-77.
29. Tamaoka, J., Katayamafujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high-performance liquid-chromatography. J Appl Bacteriol 54, 31-36.
30. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetic analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
31. Tarrand, J. J., Krieg, N. R. & Döbereiner, J. (1978). A taxonomic study of the Spirillum lipoferum group, with descriptions of a new genus, Azospirillum gen. nov. and two species, Azospirillum lipoferum (Beijerinck) comb. nov. and Azospirillum brasilense sp. nov. Can J Microbiol 24, 967-980.
32. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
33. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
34. Wu, C. Y., Zhuang, L., Zhou, S. G., Li, F. B. & He, J. (2011). Corynebacterium humireducens sp. nov., an alkaliphilic, humic acid-reducing bacterium isolated from a microbial fuel cell. Int J Syst Evol Microbiol 61, 882-887.
35. Xie, C. H. & Yokota, A. (2004). Phylogenetic analyses of the nitrogenfixing genus Derxia. J Gen Appl Microbiol 50, 129-135.
36. Xie, C. H. & Yokota, A. (2005). Azospirillum oryzae sp. nov., a nitrogen-fixing bacterium isolated from the roots of the rice plant Oryza sativa. Int J Syst Evol Microbiol 55, 1435-1438.
37. Zhang, L., Wang, Y., Dai, J., Tang, Y. L., Yang, Q., Luo, X. S. & Fang, C. X. (2009). Bacillus korlensis sp. nov., a moderately halotolerant bacterium isolated from a sand soil sample in China. Int J Syst Evol Microbiol 59, 1787-1792.