A new system of degenerate oligonucleotide primers for detection and amplification of nifHD genes

Microbiology

Volumn 77, Issue 2, 2008, Pages 247-249

  Fedorov, D N ^a   Ivanova, E G ^a   Doronina, N V ^a   Trotsenko, Yu A ^a  

^a SKRYABIN INSTITUTE OF BIOCHEMISTRY AND PHYSIOLOGY OF MICROORGANISMS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 43049114927     PISSN: 00262617     EISSN: None     Source Type: Journal    
DOI: 10.1134/S0026261708020215     Document Type: Article

References (10)

1. Martinez-Romero, E., Dinitrogen-Fixing Prokaryotes, in The Prokaryotes, 3rd ed., Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K.-H., and Stackebrandt, E., Eds., New York: Springer, 2006, vol. 2, part 1, pp. 793-817.
2. Zehr, J.P., Jenkins, B.D., Short, S.M., and Steward, G.F., Nitrogenase Gene Diversity and Microbial Community Structure: a Cross-System Comparison, Environ. Microbiol., 2003, vol. 5, pp. 539-554.
3. Marusina, A.I., Bulygina, E.S., Kuznetsov, B.B., Turova, T.P., Kravchenko, I.K, and Gal'chenko, V.F., A System of Oligonucleotide Primers for the Amplification of nifH Genes of Different Taxonomic Groups of Prokaryotes, Mikrobiologiya, 2001, vol. 70, pp. 86-91 [Microbiology (Engl. Transl.), vol. 70, no. 1, pp. 73-78].
4. Dedysh, S.N., Ricke, P., and Liesack, W., NifH and NifD Phylogenies: an Evolutionary Basis for Understanding Nitrogen Fixation Capabilities of Methanotrophic Bacteria, Microbiology (UK), 2004, vol. 150, pp. 1301-1313.
5. Zehr, J.P. and McReynolds, L.A., Use of Degenerate Oligonucleotides for Amplification of the nifH Gene from the Marine Cyanobacterium Trichodesmium thiebautii, Appl. Environ. Microbiol., 1989, vol. 55, pp. 2522-2526.
6. Bürgmann, H., Widmer, F., Sigler, W., and Zeyerl, J., New Molecular Screening Tools for Analysis of Free-Living Diazotrophs in Soil, Appl. Environ. Microbiol., 2004, vol. 70, pp. 240-247.
7. 2-Fixing Bacteria Associated with Rice Roots by Molecular Evolutionary Analysis of a nifD Library, Can. J. Microbiol., 1995, vol. 41, pp. 235-240.
8. Auman, A.J., Speake, C.C., and Lidstrom, M.E., nifH Sequences and Nitrogen Fixation in Type I and Type II Methanotrophs, Appl. Environ. Microbiol., 2001, vol. 67, pp. 4009-4016.
9. Kennedy, C., Genus Beijerinckia, in Bergey's Manual of Systematic Bacteriology, 2nd ed., Brenner, D.J., Krieg, N.R., Staley, J.T., and Garrity, G.M., Eds., New York: Springer, 2005, vol. 2, part C, pp. 423-432.
10. Wiegel, J.K.W., Genus Xanthobacter, in Bergey's Manual of Systematic Bacteriology, 2nd edn, Brenner, D.J., Krieg, N.R., Staley, J.T., and Garrity, G.M., Eds., New York: Springer, 2005, vol. 2, part C, pp. 555-566.