Assessment of the photosensitization properties of cationic porphyrins in interaction with DNA nucleotide pairs

Journal of Molecular Modeling

Volumn 19, Issue 7, 2013, Pages 2913-2924

  Cárdenas Jirón, Gloria I ^a   Cortez, Luis ^a  

^a UNIVERSIDAD DE SANTIAGO DE CHILE   (Chile)

Author keywords

Density functional theory; DNA; Photosensitizer; Porphyrin; Sensor

Indexed keywords

DNA; PORPHYRIN DERIVATIVE; WATER;

CONFERENCE PAPER; DENSITY FUNCTIONAL THEORY; ELECTRONICS; PHOTOSENSITIZATION; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION;

BINDING SITES; CATIONS; CIRCULAR DICHROISM; DNA; MODELS, THEORETICAL; PHOTOSENSITIVITY DISORDERS; PORPHYRINS; QUANTUM THEORY; THYMINE;

EID: 84879782241     PISSN: 16102940     EISSN: 09485023     Source Type: Journal    
DOI: 10.1007/s00894-013-1822-z     Document Type: Conference Paper

References (57)

1. Burger RM (1998) Chem Rev 98:1153-1170
2. Tjahjono DH, Akutsu T, Yoshioka N, Inoue H (1999) Biochim Biophys Acta 1472:333-343
3. Munson BR, Fiel RJ (1992) Nucleic Acids Res 20:1315-1319
4. Garcia G, Sarrazy V, Sol V, Morvan CL, Granet R, Alves S, Krausz P (2009) Bioorg Med Chem 17:767-776
5. Martino L, Pagano B, Fotticchia I, Neidle S, Giancola C (2009) J Phys Chem B 113:14779-14786
6. Shi D-F, Wheelhouse RT, Sun D, Hurley LH (2001) J Med Chem 44:4509-4523
7. Mezo G, Herényi L, Habdas J, Majer Z, MyÅliwa-Kurdziel B, Tóth K, Csík G (2011) Biophys Chem 155:36-44
8. Nyman ES, Hynninen PH (2004) J Photochem Photobiol B Biol 73:1-28
9. Kasturi C, Platz MS (1992) Photochem Photobiol 56:427-429
10. Wainwright M (2003) Int J Antimicrob Agents 21:510-520
11. Zupán K, Herényi L, Tóth K, Majer Z, Csík G (2004) Biochemistry 43:9151-9159
12. Dixon DW, Schinazi R, Marzilli LG (1990) Ann N Y Acad Sci 616:511-513
13. Carvlin MJ, Fiel RJ (1983) Nucleic Acids Res 11:6121-6139
14. Fiel RJ, Howard JC, Mark EH, Gupta ND (1979) Nucleic Acids Res 6:3093-3118
15. Kelly JM, Murphy MJ, McConnell DJ, OhUigin C (1985) Nucleic Acids Res 13:167-184
16. McMillin DR, Shelton AH, Bejune SA, Fanwick PE, Wall RK (2005) Coord Chem Rev 249:1451-1459
17. Pasternack RF, Gibbs EJ, Villafranca JJ (1983) Biochemistry 22:2406-2414
18. Marzilli LG, Petho G, Lin M, Kim MS, Dixon DW (1992) J Am Chem Soc 114:7575-7577
19. Villanueva A, Jori G (1993) Cancer Lett 73:59-64
20. Quiroga ED, Cormick MP, Pons P, Alvarez MG, Durantini EN (2012) Eur J Med Chem 58:332-339
21. Cano M, Castillero P, Roales J, Pedrosa JM, Brittle S, Richardson T, González-Elipe AR, Barranco A (2010) Sensors Actuators B Chem 150:764-769
22. Nitzan Y, Ashkenazi H (2001) Curr Microbiol 42:408-414
23. de Sousa Neto D, Tabak M (2012) J Colloid Interface Sci 381:73-82
24. Cárdenas-Jirón GI, Cortez-Santibañez L (2013) J Mol Model 19:811-824
25. Svensson M, Humbel S, Froese RDJ, Matsubara T, Sieber S, Morokuma K (1996) J Phys Chem 100:19357-19363
26. Humbel S, Sieber S, Morokuma K (1996) J Chem Phys 105:1959-1967
27. Dapprich S, Komáromi I, Byun KS, Morokuma K, Frisch MJ (1999) J Mol Struct (THEOCHEM) 461-462:1-21
28. Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Montgomery JA, Vreven JT, Kudin KN, Burant JC, Millam JM, Iyengar SS, Tomasi J, Barone V, Mennucci B, Cossi M, Scalmani G, Rega N, Petersson GA, Nakatsuji H, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Klene M, Li X, Knox JE, Hratchian HP, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Ayala PY, Morokuma K, Voth GA, Salvador P, Dannenberg JJ, Zakrzewski VG, Dapprich S, Daniels AD, Strain MC, Farkas O, Malick DK, Rabuck AD, Raghavachari K, Foresman JB, Ortiz JV, Cui Q, Baboul AG, Clifford S, Cioslowski J, Stefanov BB, Liu G, Liashenko A, Piskorz P, Komaromi I, Martin RL, Fox DJ, Keith T, Al-Laham MA, Peng CY, Nanayakkara A, Challacombe M, Gill PMW, Johnson B, Chen W, Wong MW, Gonzalez C, Pople JA (2007) Gaussian, Wallingford CT
29. Becke AD (1988) Phys Rev A 38:3098-3100
30. Becke ADJ (1993) Chem Phys 98:5648-5652
31. Lee C, Yang W, Parr RG (1988) Phys Rev B 37:785-789
32. Stewart JJP (1989) J Comput Chem 10:209-220
33. Rappe AK, Casewit CJ, Colwell KS, Goddard WA, Skiff WM (1992) J Am Chem Soc 114:10024-10035
34. Sundaresan N, Pillai CKS, Suresh CH (2006) J Phys Chem A 110:8826-8831
35. Sundaresan N, Suresh CH (2007) J Chem Theory Comput 3:1172-1182
36. Adamo C, Barone V (1999) J Chem Phys 110:6158-6170
37. Ernzerhof M, Scuseria GEJ (1999) Chem Phys 110:5029-5036
38. Yanai T, Tew DP, Handy NC (2004) Chem Phys Lett 393:51-57
39. Zhao Y, Truhlar D (2008) Theor Chem Accounts Theory Comput Model (Theor Chim Acta) 120:215-241
40. Grimme S (2006) J Comput Chem 27:1787-1799
41. Cossi M, Barone VJ (2001) Chem Phys 115:4708-4717
42. Improta R, Barone V, Santoro F (2007) Angew Chem Int Ed 46:405-408
43. Santoro F, Barone V, Gustavsson T, Improta RJ (2006) Am Chem Soc 128:16312-16322
44. Scalmani G, Frisch MJ, Mennucci B, Tomasi J, Cammi R, Barone VJ (2005) Chem Phys 124:94107-94121
45. Cárdenas-Jirón GI, Barboza CA, López R, Menéndez MI (2011) J Phys Chem A 115:11988-11997
46. López R, Menéndez M, Santander-Nelli M, Cárdenas-Jirón G (2010) Theor Chem Accounts Theory Comput Model (Theor Chim Acta) 127:475-484
47. Yáñez M, Guerrero J, Aguirre P, Moya SA, Cárdenas-Jirón G (2009) J Organomet Chem 694:3781-3792
48. Palma M, Cárdenas-Jirón GI, Menéndez Rodríguez MI (2008) J Phys Chem A 112:13574-13583
49. Petit L, Quartarolo A, Adamo C, Russo N (2006) J Phys Chem B 110:2398-2404
50. Quartarolo AD, Russo N, Sicilia E, Lelj F (2007) J Chem Theory Comput 3:860-869
51. Alberto ME, De Simone BC, Cospito S, Imbardelli D, Veltri L, Chidichimo G, Russo N (2012) Chem Phys Lett 552:141-145
52. Adamo C, Barone V (1999) Chem Phys Lett 314:152-157
53. Jacquemin D, Wathelet VR, Perpète EA, Adamo C (2009) J Chem Theory Comput 5:2420-2435
54. Nový J, Urbanová M (2007) Biopolymers 85:349-358
55. Hong S, Huh S (2003) Bull Korean Chem Soc 24:137-140
56. Mukundan NE, Petho G, Dixon DW, Kim MS, Marzilli LG (1994) Inorg Chem 33:4676-4687
57. Mukundan NE, Petho G, Dixon DW, Marzilli LG (1995) Inorg Chem 34:3677-3687