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Volumn 19, Issue 8, 2013, Pages 1035-1045

Molecular network of chromatin immunoprecipitation followed by deep sequencing-based vitamin D receptor target genes

Author keywords

ChIP Seq; GenomeJack; multiple sclerosis; pathway analysis; VDR; vitamin D

Indexed keywords

CALCITRIOL; FC RECEPTOR; TRANSCRIPTOME; VITAMIN D;

EID: 84879768723     PISSN: 13524585     EISSN: 14770970     Source Type: Journal    
DOI: 10.1177/1352458512471873     Document Type: Article
Times cited : (21)

References (34)
  • 3
    • 61449102631 scopus 로고    scopus 로고
    • Expression of the multiple sclerosis-associated MHC class II Allele HLA-DRB1*1501 is regulated by vitamin D
    • Ramagopalan SV, Maugeri NJ, Handunnetthi L, et al. Expression of the multiple sclerosis-associated MHC class II Allele HLA-DRB1*1501 is regulated by vitamin D. PLoS Genet. 2009 ; 5: e1000369
    • (2009) PLoS Genet , vol.5 , pp. 1000369
    • Ramagopalan, S.V.1    Maugeri, N.J.2    Handunnetthi, L.3
  • 5
    • 68949140898 scopus 로고    scopus 로고
    • Vitamin D status is positively correlated with regulatory T cell function in patients with multiple sclerosis
    • Smolders J, Thewissen M, Peelen E, et al. Vitamin D status is positively correlated with regulatory T cell function in patients with multiple sclerosis. PLoS One. 2009 ; 4: e6635
    • (2009) PLoS One , vol.4 , pp. 6635
    • Smolders, J.1    Thewissen, M.2    Peelen, E.3
  • 6
    • 77951253745 scopus 로고    scopus 로고
    • 1,25-Dihydroxyvitamin D3 and IL-2 combine to inhibit T cell production of inflammatory cytokines and promote development of regulatory T cells expressing CTLA-4 and FoxP3
    • Jeffery LE, Burke F, Mura M, et al. 1,25-Dihydroxyvitamin D3 and IL-2 combine to inhibit T cell production of inflammatory cytokines and promote development of regulatory T cells expressing CTLA-4 and FoxP3. J Immunol. 2009 ; 183: 5458-5467
    • (2009) J Immunol , vol.183 , pp. 5458-5467
    • Jeffery, L.E.1    Burke, F.2    Mura, M.3
  • 7
    • 78650174045 scopus 로고    scopus 로고
    • Assessment of evidence for a protective role of vitamin D in multiple sclerosis
    • Hanwell HE, Banwell B. Assessment of evidence for a protective role of vitamin D in multiple sclerosis. Biochim Biophys Acta. 2011 ; 1812: 202-212
    • (2011) Biochim Biophys Acta , vol.1812 , pp. 202-212
    • Hanwell, H.E.1    Banwell, B.2
  • 8
    • 77951836633 scopus 로고    scopus 로고
    • Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis
    • Baranzini SE, Mudge J, van Velkinburgh JC, et al. Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis. Nature. 2010 ; 464: 1351-1356
    • (2010) Nature , vol.464 , pp. 1351-1356
    • Baranzini, S.E.1    Mudge, J.2    Van Velkinburgh, J.C.3
  • 9
    • 70349312354 scopus 로고    scopus 로고
    • ChIP-seq: Advantages and challenges of a maturing technology
    • Park PJ. ChIP-seq: Advantages and challenges of a maturing technology. Nat Rev Genet. 2009 ; 10: 669-680
    • (2009) Nat Rev Genet , vol.10 , pp. 669-680
    • Park, P.J.1
  • 10
    • 65349131253 scopus 로고    scopus 로고
    • Molecular network of the comprehensive multiple sclerosis brain-lesion proteome
    • Satoh JI, Tabunoki H, Yamamura T. Molecular network of the comprehensive multiple sclerosis brain-lesion proteome. Mult Scler. 2009 ; 15: 531-541
    • (2009) Mult Scler , vol.15 , pp. 531-541
    • Satoh, J.I.1    Tabunoki, H.2    Yamamura, T.3
  • 11
    • 84866173359 scopus 로고    scopus 로고
    • Cellular sources of dysregulated cytokines in relapsing-remitting multiple sclerosis
    • Romme Christensen J, Börnsen L, Hesse D, et al. Cellular sources of dysregulated cytokines in relapsing-remitting multiple sclerosis. J Neuroinflammation. 2012 ; 9: 215
    • (2012) J Neuroinflammation , vol.9 , pp. 215
    • Romme Christensen, J.1    Börnsen, L.2    Hesse, D.3
  • 12
    • 77956885532 scopus 로고    scopus 로고
    • A ChIP-seq defined genome-wide map of vitamin D receptor binding: Associations with disease and evolution
    • Ramagopalan SV, Heger A, Berlanga AJ, et al. A ChIP-seq defined genome-wide map of vitamin D receptor binding: associations with disease and evolution. Genome Res. 2010 ; 20: 1352-1360
    • (2010) Genome Res , vol.20 , pp. 1352-1360
    • Ramagopalan, S.V.1    Heger, A.2    Berlanga, A.J.3
  • 13
    • 82255185583 scopus 로고    scopus 로고
    • Nuclear hormone 1α,25-dihydroxyvitamin D3 elicits a genome-wide shift in the locations of VDR chromatin occupancy
    • Heikkinen S, Väisänen S, Pehkonen P, et al. Nuclear hormone 1α,25-dihydroxyvitamin D3 elicits a genome-wide shift in the locations of VDR chromatin occupancy. Nucleic Acids Res. 2011 ; 39: 9181-9193
    • (2011) Nucleic Acids Res , vol.39 , pp. 9181-9193
    • Heikkinen, S.1    Väisänen, S.2    Pehkonen, P.3
  • 14
    • 84860317030 scopus 로고    scopus 로고
    • Genetics of gene expression in primary immune cells identifies cell type-specific master regulators and roles of HLA alleles
    • Fairfax BP, Makino S, Radhakrishnan J, et al. Genetics of gene expression in primary immune cells identifies cell type-specific master regulators and roles of HLA alleles. Nat Genet. 2012 ; 44: 502-510
    • (2012) Nat Genet , vol.44 , pp. 502-510
    • Fairfax, B.P.1    Makino, S.2    Radhakrishnan, J.3
  • 15
    • 84856072305 scopus 로고    scopus 로고
    • The first genome-wide view of vitamin D receptor locations and their mechanistic implications
    • Carlberg C, Seuter S, Heikkinen S. The first genome-wide view of vitamin D receptor locations and their mechanistic implications. Anticancer Res. 2012 ; 32: 271-282
    • (2012) Anticancer Res , vol.32 , pp. 271-282
    • Carlberg, C.1    Seuter, S.2    Heikkinen, S.3
  • 16
    • 84865777819 scopus 로고    scopus 로고
    • ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
    • Landt SG, Marinov GK, Kundaje A, et al. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res. 2012 ; 22: 1813-1831
    • (2012) Genome Res , vol.22 , pp. 1813-1831
    • Landt, S.G.1    Marinov, G.K.2    Kundaje, A.3
  • 17
    • 77954763087 scopus 로고    scopus 로고
    • Emerging regulatory paradigms for control of gene expression by 1,25-dihydroxyvitamin D3
    • Pike JW, Meyer MB, Martowicz ML, et al. Emerging regulatory paradigms for control of gene expression by 1,25-dihydroxyvitamin D3. J Steroid Biochem Mol Biol. 2010 ; 121: 130-135
    • (2010) J Steroid Biochem Mol Biol , vol.121 , pp. 130-135
    • Pike, J.W.1    Meyer, M.B.2    Martowicz, M.L.3
  • 18
    • 53849136271 scopus 로고    scopus 로고
    • Vitamin D and human health: Lessons from vitamin D receptor null mice
    • Bouillon R, Carmeliet G, Verlinden L, et al. Vitamin D and human health: Lessons from vitamin D receptor null mice. Endocr Rev. 2008 ; 29: 726-776
    • (2008) Endocr Rev , vol.29 , pp. 726-776
    • Bouillon, R.1    Carmeliet, G.2    Verlinden, L.3
  • 19
    • 77954761161 scopus 로고    scopus 로고
    • Genome-wide analysis of the VDR/RXR cistrome in osteoblast cells provides new mechanistic insight into the actions of the vitamin D hormone
    • Meyer MB, Goetsch PD, Pike JW. Genome-wide analysis of the VDR/RXR cistrome in osteoblast cells provides new mechanistic insight into the actions of the vitamin D hormone. J Steroid Biochem Mol Biol. 2010 ; 121: 136-141
    • (2010) J Steroid Biochem Mol Biol , vol.121 , pp. 136-141
    • Meyer, M.B.1    Goetsch, P.D.2    Pike, J.W.3
  • 20
    • 33747787316 scopus 로고    scopus 로고
    • Activation of receptor activator of NF-κB ligand gene expression by 1,25-dihydroxyvitamin D3 is mediated through multiple long-range enhancers
    • DOI 10.1128/MCB.00353-06
    • Kim S, Yamazaki M, Zella LA, et al. Activation of receptor activator of NF-κB ligand gene expression by 1,25-dihydroxyvitamin D3 is mediated through multiple long-range enhancers. Mol Cell Biol. 2006 ; 26: 6469-6486 (Pubitemid 44277887)
    • (2006) Molecular and Cellular Biology , vol.26 , Issue.17 , pp. 6469-6486
    • Kim, S.1    Yamazaki, M.2    Zella, L.A.3    Shevde, N.K.4    Pike, J.W.5
  • 21
    • 84055178443 scopus 로고    scopus 로고
    • Vitamin D and cancer: A review of molecular mechanisms
    • Fleet JC, DeSmet M, Johnson R, et al. Vitamin D and cancer: A review of molecular mechanisms. Biochem J. 2012 ; 441: 61-76
    • (2012) Biochem J , vol.441 , pp. 61-76
    • Fleet, J.C.1    Desmet, M.2    Johnson, R.3
  • 22
    • 84859582058 scopus 로고    scopus 로고
    • Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function
    • Lickwar CR, Mueller F, Hanlon SE, et al. Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function. Nature. 2012 ; 484: 251-255
    • (2012) Nature , vol.484 , pp. 251-255
    • Lickwar, C.R.1    Mueller, F.2    Hanlon, S.E.3
  • 23
    • 84865068203 scopus 로고    scopus 로고
    • Vitamin D receptor binding, chromatin states and association with multiple sclerosis
    • Disanto G, Sandve GK, Berlanga-Taylor AJ, et al. Vitamin D receptor binding, chromatin states and association with multiple sclerosis. Hum Mol Genet. 2012 ; 21: 3575-3586
    • (2012) Hum Mol Genet , vol.21 , pp. 3575-3586
    • Disanto, G.1    Sandve, G.K.2    Berlanga-Taylor, A.J.3
  • 24
    • 34547630883 scopus 로고    scopus 로고
    • 1,25-Dihydroxyvitamin D3 reverses experimental autoimmune encephalomyelitis by inhibiting chemokine synthesis and monocyte trafficking
    • DOI 10.1002/jnr.21382
    • Pedersen LB, Nashold FE, Spach KM, et al. 1,25-dihydroxyvitamin D3 reverses experimental autoimmune encephalomyelitis by inhibiting chemokine synthesis and monocyte trafficking. J Neurosci Res. 2007 ; 85: 2480-2490 (Pubitemid 47204762)
    • (2007) Journal of Neuroscience Research , vol.85 , Issue.11 , pp. 2480-2490
    • Pedersen, L.B.1    Nashold, F.E.2    Spach, K.M.3    Hayes, C.E.4
  • 25
    • 79251572365 scopus 로고    scopus 로고
    • Identification of endothelial cell junctional proteins and lymphocyte receptors involved in transendothelial migration of human effector memory CD4+ T cells
    • Manes TD, Pober JS. Identification of endothelial cell junctional proteins and lymphocyte receptors involved in transendothelial migration of human effector memory CD4+ T cells. J Immunol. 2011 ; 186: 1763-1768
    • (2011) J Immunol , vol.186 , pp. 1763-1768
    • Manes, T.D.1    Pober, J.S.2
  • 26
    • 77949873898 scopus 로고    scopus 로고
    • Vitamin D controls T cell antigen receptor signaling and activation of human T cells
    • Von Essen MR, Kongsbak M, Schjerling P, et al. Vitamin D controls T cell antigen receptor signaling and activation of human T cells. Nat Immunol. 2010 ; 11: 344-349
    • (2010) Nat Immunol , vol.11 , pp. 344-349
    • Von Essen, M.R.1    Kongsbak, M.2    Schjerling, P.3
  • 28
    • 73349115263 scopus 로고    scopus 로고
    • Transcription factors RUNX1 and RUNX3 in the induction and suppressive function of Foxp3+ inducible regulatory T cells
    • Klunker S, Chong MM, Mantel PY, et al. Transcription factors RUNX1 and RUNX3 in the induction and suppressive function of Foxp3+ inducible regulatory T cells. J Exp Med. 2009 ; 206: 2701-2715
    • (2009) J Exp Med , vol.206 , pp. 2701-2715
    • Klunker, S.1    Chong, M.M.2    Mantel, P.Y.3
  • 29
    • 84866555886 scopus 로고    scopus 로고
    • From IL-2 to IL-37: The expanding spectrum of anti-inflammatory cytokines
    • Banchereau J, Pascual V, O'Garra A. From IL-2 to IL-37: The expanding spectrum of anti-inflammatory cytokines. Nat Immunol. 2012 ; 13: 925-931
    • (2012) Nat Immunol , vol.13 , pp. 925-931
    • Banchereau, J.1    Pascual, V.2    O'Garra, A.3
  • 30
    • 84859931287 scopus 로고    scopus 로고
    • The evidence for a role of B cells in multiple sclerosis
    • Disanto G, Morahan JM, Barnett MH, et al. The evidence for a role of B cells in multiple sclerosis. Neurology. 2012 ; 78: 823-832
    • (2012) Neurology , vol.78 , pp. 823-832
    • Disanto, G.1    Morahan, J.M.2    Barnett, M.H.3
  • 33
    • 0032476593 scopus 로고    scopus 로고
    • Fc receptor-mediated phagocytosis requires CDC42 and Rac1
    • DOI 10.1093/emboj/17.21.6219
    • Massol P, Montcourrier P, Guillemot JC, et al. Fc receptor-mediated phagocytosis requires CDC42 and Rac1. EMBO J. 1998 ; 17: 6219-6229 (Pubitemid 28497795)
    • (1998) EMBO Journal , vol.17 , Issue.21 , pp. 6219-6229
    • Massol, P.1    Montcourrier, P.2    Guillemot, J.-C.3    Chavrier, P.4


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