Phylogenetic analysis of vertebrate CXC chemokines reveals novel lineage specific groups in teleost fish

Developmental and Comparative Immunology

Volumn 41, Issue 2, 2013, Pages 137-152

  Chen, Jun ^a,b   Xu, Qiaoqing ^a,c   Wang, Tiehui ^a   Collet, Bertrand ^d   Corripio Miyar, Yolanda ^a   Bird, Steve ^a,e   Xie, Ping ^b   Nie, Pin ^b   Secombes, Christopher J ^a   Zou, Jun ^a  

^a UNIVERSITY OF ABERDEEN   (United Kingdom)

^b INSTITUTE OF HYDROBIOLOGY   (China)

^c YANGTZE UNIVERSITY   (China)

^d MARINE LABORATORY   (United Kingdom)

^e UNIVERSITY OF WAIKATO   (New Zealand)

Author keywords

CXC chemokines; Fish; Teleosts; Vertebrates

Indexed keywords

ALPHA CHEMOKINE; CD4 ANTIGEN; COLONY STIMULATING FACTOR RECEPTOR; CXCL11 CHEMOKINE; CXCL13 CHEMOKINE; CXCL14 CHEMOKINE; CYSTEINE; GAMMA INTERFERON; INTERLEUKIN 1BETA; INTERLEUKIN 8; STROMAL CELL DERIVED FACTOR 1;

ANIMAL CELL; ANIMAL TISSUE; ANTIGEN EXPRESSION; ARTICLE; CONTROLLED STUDY; DATA MINING; IN VITRO STUDY; LEUKOCYTE MIGRATION; MOLECULAR CLONING; NEUTROPHIL CHEMOTAXIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN EXPRESSION; RAINBOW TROUT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TELEOST; TISSUE DISTRIBUTION; VERTEBRATE;

AMPHIBIA; BACTERIA (MICROORGANISMS); MAMMALIA; ONCORHYNCHUS MYKISS; REPTILIA; SALMONIDAE; TELEOSTEI; VERTEBRATA;

EID: 84879457610     PISSN: 0145305X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.dci.2013.05.006     Document Type: Article

References (60)

1. Abdelkhalek N.K., Komiya A., Kato-Unoki Y., Somamoto T., Nakao M. Molecular evidence for the existence of two distinct IL-8 lineages of teleost CXC-chemokines. Fish Shellfish Immunol. 2009, 27:763-767.
2. Aghaallaei N., Bajoghli B., Schwarz H., Schorpp M., Boehm T. Characterization of mononuclear phagocytic cells in medaka fish transgenic for a cxcr3a:gfp reporter. Proc. Natl. Acad. Sci. USA 2010, 107:18079-18084.
3. Alejo A., Tafalla C. Chemokines in teleost fish species. Dev. Comp. Immunol. 2011, 35:1215-1222.
4. Allen S.J., Crown S.E., Handel T.M. Chemokine: receptor structure, interactions, and antagonism. Annu. Rev. Immunol. 2007, 25:787-820.
5. Augsten M., Hagglof C., Olsson E., Stolz C., Tsagozis P., Levchenko T., et al. CXCL14 is an autocrine growth factor for fibroblasts and acts as a multi-modal stimulator of prostate tumor growth. Proc. Natl. Acad. Sci. USA 2009, 106:3414-3419.
6. Bai Z., Hayasaka H., Kobayashi M., Li W., Guo Z., Jang M.H., et al. CXC chemokine ligand 12 promotes CCR7-dependent naive T cell trafficking to lymph nodes and Peyer's patches. J. Immunol. 2009, 182:1287-1295.
7. Baoprasertkul P., Peatman E., Chen L., He C., Kucuktas H., Li P., et al. Sequence analysis and expression of a CXC chemokine in resistant and susceptible catfish after infection of Edwardsiella ictaluri. Dev. Comp. Immunol. 2004, 28:769-780.
8. Baoprasertkul P., He C., Peatman E., Zhang S., Li P., Liu Z. Constitutive expression of three novel catfish CXC chemokines: homeostatic chemokines in teleost fish. Mol. Immunol. 2005, 42:1355-1366.
9. Boldajipour B., Mahabaleshwar H., Kardash E., Reichman-Fried M., Blaser H., Minina S., et al. Control of chemokine-guided cell migration by ligand sequestration. Cell 2008, 132:463-473.
10. Burkle A., Niedermeier M., Schmitt-Graff A., Wierda W.G., Keating M.J., Burger J.A. Overexpression of the CXCR5 chemokine receptor, and its ligand, CXCL13 in B-cell chronic lymphocytic leukemia. Blood 2007, 110:3316-3325.
11. Castro R., Martin S.A., Bird S., Lamas J., Secombes C.J. Characterisation of gamma-interferon responsive promoters in fish. Mol. Immunol. 2008, 45:3454-3462.
12. Chang M., Collet B., Nie P., Lester K., Campbell S., Secombes C.J., et al. Expression and Functional Characterization of the RIG-I-Like Receptors MDA5 and LGP2 in Rainbow Trout (Oncorhynchus mykiss). J. Virol. 2011, 85:8403-8412.
13. Chaves-Pozo E., Montero J., Cuesta A., Tafalla C. Viral hemorrhagic septicemia and infectious pancreatic necrosis viruses replicate differently in rainbow trout gonad and induce different chemokine transcription profiles. Dev. Comp. Immunol. 2010, 34:648-658.
14. Chen L., He C., Baoprasertkul P., Xu P., Li P., Serapion J., et al. Analysis of a catfish gene resembling interleukin-8: cDNA cloning, gene structure, and expression after infection with Edwardsiella ictaluri. Dev. Comp. Immunol. 2005, 29:135-142.
15. Chen L.C., Wu J.L., Shiau C.Y., Chen J.Y. Organization and promoter analysis of the zebrafish (Danio rerio) chemokine gene (CXC-64) promoter. Fish Physiol. Biochem. 2010, 36:511-521.
16. Corripio-Miyar Y., Bird S., Tsamopoulos K., Secombes C.J. Cloning and expression analysis of two pro-inflammatory cytokines, IL-1 beta and IL-8, in haddock (Melanogrammus aeglefinus). Mol. Immunol. 2007, 44:1361-1373.
17. DeVries M.E., Kelvin A.A., Xu L., Ran L., Robinson J., Kelvin D.J. Defining the origins and evolution of the chemokine/chemokine receptor system. J. Immunol. 2006, 176:401-415.
18. Emanuelsson O., Brunak S., von Heijne G., Nielsen H. Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2007, 2:953-971.
19. Harada A., Sekido N., Akahoshi T., Wada T., Mukaida N., Matsushima K. Essential involvement of interleukin-8 (IL-8) in acute inflammation. J. Leukoc. Biol. 1994, 56:559-564.
20. Harun N.O., Zou J., Zhang Y.A., Nie P., Secombes C.J. The biological effects of rainbow trout (Oncorhynchus mykiss) recombinant interleukin-8. Dev. Comp. Immunol. 2008, 32:673-681.
21. Hong S., Zou J., Collet B., Bols N.C., Secombes C.J. Analysis and characterisation of IL-1beta processing in rainbow trout, Oncorhynchus mykiss. Fish Shellfish Immunol. 2004, 16:453-459.
22. Huising M.O., Stet R.J., Kruiswijk C.P., Savelkoul H.F., Lidy Verburg-van Kemenade B.M. Molecular evolution of CXC chemokines: extant CXC chemokines originate from the CNS. Trends Immunol. 2003, 24:307-313.
23. Huising M.O., van der Meulen T., Flik G., Verburg-van Kemenade B.M. Three novel carp CXC chemokines are expressed early in ontogeny and at nonimmune sites. Eur. J. Biochem. 2004, 271:4094-4106.
24. Inoue Y., Haruta C., Usui K., Moritomo T., Nakanishi T. Molecular cloning and sequencing of the banded dogfish (Triakis scyllia) interleukin-8 cDNA. Fish Shellfish Immunol. 2003, 14:275-281.
25. Kim H.J., Yasuike M., Kondo H., Hirono I., Aoki T. Molecular characterization and gene expression of a CXC chemokine gene from Japanese flounder Paralichthys olivaceus. Fish Shellfish Immunol. 2007, 23:1275-1284.
26. Kuroda N., Uinuk-ool T.S., Sato A., Samonte I.E., Figueroa F., Mayer W.E., et al. Identification of chemokines and a chemokine receptor in cichlid fish, shark, and lamprey. Immunogenetics 2003, 54:884-895.
27. Laing K.J., Secombes C.J. Chemokines. Dev. Comp. Immunol. 2004, 28:443-460.
28. Laing K.J., Bols N., Secombes C.J. A CXC chemokine sequence isolated from the rainbow trout Oncorhynchus mykiss resembles the closely related interferon-gamma-inducible chemokines CXCL9, CXCL10 and CXCL11. Eur. Cytokine Netw. 2002, 13:462-473.
29. Laing K.J., Zou J.J., Wang T., Bols N., Hirono I., Aoki T., et al. Identification and analysis of an interleukin 8-like molecule in rainbow trout Oncorhynchus mykiss. Dev. Comp. Immunol. 2002, 26:433-444.
30. Marsden M.J., Vaughan L.M., Foster T.J., Secombes C.J. A live (delta aroA) Aeromonas salmonicida vaccine for furunculosis preferentially stimulates T-cell responses relative to B-cell responses in rainbow trout (Oncorhynchus mykiss). Infect. Immun. 1996, 64:3863-3869.
31. Matloubian M., David A., Engel S., Ryan J.E., Cyster J.G. A transmembrane CXC chemokine is a ligand for HIV-coreceptor Bonzo. Nat. Immunol. 2000, 1:298-304.
32. Montero J., Coll J., Sevilla N., Cuesta A., Bols N.C., Tafalla C. Interleukin 8 and CK-6 chemokines specifically attract rainbow trout (Oncorhynchus mykiss) RTS11 monocyte-macrophage cells and have variable effects on their immune functions. Dev. Comp. Immunol. 2008, 32:1374-1384.
33. Montero J., Chaves-Pozo E., Cuesta A., Tafalla C. Chemokine transcription in rainbow trout (Oncorhynchus mykiss) is differently modulated in response to viral hemorrhagic septicaemia virus (VHSV) or infectious pancreatic necrosis virus (IPNV). Fish Shellfish Immunol. 2009, 27:661-669.
34. Najakshin A.M., Mechetina L.V., Alabyev B.Y., Taranin A.V. Identification of an IL-8 homolog in lamprey (Lampetra fluviatilis): early evolutionary divergence of chemokines. Eur. J. Immunol. 1999, 29:375-382.
35. Nomiyama H., Hieshima K., Osada N., Kato-Unoki Y., Otsuka-Ono K., Takegawa S., et al. Extensive expansion and diversification of the chemokine gene family in zebrafish: identification of a novel chemokine subfamily CX. BMC Genomics 2008, 9:222.
36. O'Farrell C., Vaghefi N., Cantonnet M., Buteau B., Boudinot P., Benmansour A. Survey of transcript expression in rainbow trout leukocytes reveals a major contribution of interferon-responsive genes in the early response to a rhabdovirus infection. J. Virol. 2002, 76:8040-8049.
37. Peatman E., Liu Z. Evolution of CC chemokines in teleost fish: a case study in gene duplication and implications for immune diversity. Immunogenetics 2007, 59:613-623.
38. Peddie S., Zou J., Cunningham C., Secombes C.J. Rainbow trout (Oncorhynchus mykiss) recombinant IL-1beta and derived peptides induce migration of head-kidney leucocytes in vitro. Fish Shellfish Immunol. 2001, 11:697-709.
39. Peddie S., Zou J., Secombes C.J. Immunostimulation in the rainbow trout (Oncorhynchus mykiss) following intraperitoneal administration of Ergosan. Vet. Immunol. Immunopathol. 2002, 86:101-113.
40. Pisabarro M.T., Leung B., Kwong M., Corpuz R., Frantz G.D., Chiang N., et al. Cutting edge: novel human dendritic cell- and monocyte-attracting chemokine-like protein identified by fold recognition methods. J. Immunol. 2006, 176:2069-2073.
41. Sanchez E., Coll J., Tafalla C. Expression of inducible CC chemokines in rainbow trout (Oncorhynchus mykiss) in response to a viral haemorrhagic septicemia virus (VHSV) DNA vaccine and interleukin 8. Dev. Comp. Immunol. 2007, 31:916-926.
42. Sangrador-Vegas A., Lennington J.B., Smith T.J. Molecular cloning of an IL-8-like CXC chemokine and tissue factor in rainbow trout (Oncorhynchus mykiss) by use of suppression subtractive hybridization. Cytokine 2002, 17:66-70.
43. Sansom I.J., Smith M.P., Armstrong H.A., Smith M.M. Presence of the earliest vertebrate hard tissue in conodonts. Science 1992, 256:1308-1311.
44. Savan R., Kono T., Aman A., Sakai M. Isolation and characterization of a novel CXC chemokine in common carp (Cyprinus carpio L.). Mol. Immunol. 2003, 39:829-834.
45. Seppola M., Larsen A.N., Steiro K., Robertsen B., Jensen I. Characterisation and expression analysis of the interleukin genes, IL-1beta, IL-8 and IL-10, in Atlantic cod (Gadus morhua L.). Mol. Immunol. 2008, 45:887-897.
46. Sepulcre M.P., Sarropoulou E., Kotoulas G., Meseguer J., Mulero V. Vibrio anguillarum evades the immune response of the bony fish sea bass (Dicentrarchus labrax L.) through the inhibition of leukocyte respiratory burst and down-regulation of apoptotic caspases. Mol. Immunol. 2007, 44:3751-3757.
47. Sharp G.J., Pike A.W., Secombes C.J. Leucocyte migration in rainbow trout (Oncorhynchus mykiss [Walbaum]): optimization of migration conditions and responses to host and pathogen (Diphyllobothrium dendriticum [Nitzsch]) derived chemoattractants. Dev. Comp. Immunol. 1991, 15:295-305.
48. Sigh J., Lindenstrom T., Buchmann K. Expression of pro-inflammatory cytokines in rainbow trout (Oncorhynchus mykiss) during an infection with Ichthyophthirius multifiliis. Fish Shellfish Immunol. 2004, 17:75-86.
49. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
50. Tian C., Chen Y., Ao J., Chen X. Molecular characterization and bioactivity of a CXCL13 chemokine in large yellow croaker Pseudosciaena crocea. Fish Shellfish Immunol. 2010, 28:445-452.
51. van der Aa L.M., Chadzinska M., Tijhaar E., Boudinot P., Verburg-van Kemenade B.M. CXCL8 chemokines in teleost fish: two lineages with distinct expression profiles during early phases of inflammation. PLoS ONE 2010, 5:e12384.
52. van der Aa L.M., Chadzinska M., Golbach L.A., Ribeiro C.M., Lidy Verburg-van Kemenade B.M. Pro-inflammatory functions of carp CXCL8-like and CXCb chemokines. Dev. Comp. Immunol. 2012, 36:741-750.
53. van der Aa L.M., Chadzinska M., Derks W., Scheer M., Levraud J.P., Boudinot P., et al. Diversification of IFNgamma-inducible CXCb chemokines in cyprinid fish. Dev. Comp. Immunol. 2012, 38:243-253.
54. Vandercappellen J., Van Damme J., Struyf S. The role of CXC chemokines and their receptors in cancer. Cancer Lett. 2008, 267:226-244.
55. Viola A., Luster A.D. Chemokines and their receptors: drug targets in immunity and inflammation. Annu. Rev. Pharmacol. Toxicol. 2008, 48:171-197.
56. Wang J., Adelson D.L., Yilmaz A., Sze S.H., Jin Y., Zhu J.J. Genomic organization, annotation, and ligand-receptor inferences of chicken chemokines and chemokine receptor genes based on comparative genomics. BMC Genomics 2005, 6:45.
57. Wang T., Hanington P.C., Belosevic M., Secombes C.J. Two macrophage colony-stimulating factor genes exist in fish that differ in gene organization and are differentially expressed. J. Immunol. 2008, 181:3310-3322.
58. Wiens G.D., Glenney G.W., Lapatra S.E., Welch T.J. Identification of novel rainbow trout (Onchorynchus mykiss) chemokines, CXCd1 and CXCd2: mRNA expression after Yersinia ruckeri vaccination and challenge. Immunogenetics 2006, 58:308-323.
59. Zou J., Carrington A., Collet B., Dijkstra J.M., Yoshiura Y., Bols N., et al. Identification and bioactivities of IFN-gamma in rainbow trout Oncorhynchus mykiss: the first Th1-type cytokine characterized functionally in fish. J. Immunol. 2005, 175:2484-2494.
60. Zou J., Tafalla C., Truckle J., Secombes C.J. Identification of a second group of type I IFNs in fish sheds light on IFN evolution in vertebrates. J. Immunol. 2007, 179:3859-3871.