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Volumn 280, Issue 4, 2008, Pages 293-304

Identification of homologous, homoeologous and paralogous sequence variants in an outbreeding allopolyploid species based on comparison with progenitor taxa

Author keywords

Candidate gene; Forage legume; Functional variation; Haplotype; Single nucleotide polymorphism; White clover

Indexed keywords

ALLOPOLYPLOIDY; ARTICLE; CONTROLLED STUDY; GENE FREQUENCY; GENE MAPPING; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC IDENTIFICATION; GENETIC VARIABILITY; HAPLOTYPE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 51349160469     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-008-0365-y     Document Type: Article
Times cited : (35)

References (60)
  • 1
    • 0345071423 scopus 로고    scopus 로고
    • Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
    • KL Adams R Cronn R Percifield JF Wendel 2003 Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing Proc Nat Acad Sci USA 100 4649 4654
    • (2003) Proc Nat Acad Sci USA , vol.100 , pp. 4649-4654
    • Adams, K.L.1    Cronn, R.2    Percifield, R.3    Wendel, J.F.4
  • 3
    • 0036984411 scopus 로고    scopus 로고
    • Ancestors of white clover (Trifolium repens L.), as revealed by isozyme polymorphisms
    • A Badr H Sayed-Ahmed A El-Shanshouri LE Watson 2002 Ancestors of white clover (Trifolium repens L.), as revealed by isozyme polymorphisms Theor Appl Genet 106 143 148
    • (2002) Theor Appl Genet , vol.106 , pp. 143-148
    • Badr, A.1    Sayed-Ahmed, H.2    El-Shanshouri, A.3    Watson, L.E.4
  • 7
    • 0037483029 scopus 로고
    • Chromosome pairing in two interspecific hybrids of Trifolium
    • CC Chen PB Gibson 1970 Chromosome pairing in two interspecific hybrids of Trifolium Can J Genet Cytol 12 790 794
    • (1970) Can J Genet Cytol , vol.12 , pp. 790-794
    • Chen, C.C.1    Gibson, P.B.2
  • 8
    • 0037820559 scopus 로고
    • Karyotypes of fifteen Trifolium species in section Amoria
    • CC Chen PB Gibson 1971 Karyotypes of fifteen Trifolium species in section Amoria Crop Sci 11 441 445
    • (1971) Crop Sci , vol.11 , pp. 441-445
    • Chen, C.C.1    Gibson, P.B.2
  • 9
  • 12
    • 0018185292 scopus 로고
    • Molecular basis of base substitution hotspots in Escherichia coli
    • C Coulondre JH Miller PJ Farabaugh W Gilbert 1978 Molecular basis of base substitution hotspots in Escherichia coli Nature 274 775 780
    • (1978) Nature , vol.274 , pp. 775-780
    • Coulondre, C.1    Miller, J.H.2    Farabaugh, P.J.3    Gilbert, W.4
  • 13
    • 0032465507 scopus 로고    scopus 로고
    • Simple methods for isolating homoeologous loci from allopolyploid genomes
    • RC Cronn JF Wendel 1998 Simple methods for isolating homoeologous loci from allopolyploid genomes Genome 41 756 762
    • (1998) Genome , vol.41 , pp. 756-762
    • Cronn, R.C.1    Wendel, J.F.2
  • 15
    • 46249106285 scopus 로고    scopus 로고
    • Discovery and genetic mapping of single nucleotide polymorphisms in candidate genes for pathogen defence response in perennial ryegrass (Lolium perenne L.)
    • PM Dracatos NOI Cogan MP Dobrowolski TI Sawbridge GC Spangenberg KF Smith JW Forster 2008 Discovery and genetic mapping of single nucleotide polymorphisms in candidate genes for pathogen defence response in perennial ryegrass (Lolium perenne L.) Theor Appl Genet 117 203 219
    • (2008) Theor Appl Genet , vol.117 , pp. 203-219
    • Dracatos, P.M.1    Cogan, N.O.I.2    Dobrowolski, M.P.3    Sawbridge, T.I.4    Spangenberg, G.C.5    Smith, K.F.6    Forster, J.W.7
  • 23
    • 0033621819 scopus 로고    scopus 로고
    • A Krüppel-like zinc finger protein is involved in nitrogen-fixing root nodule organogenesis
    • F Frugier S Poirier B Satiat-Jeunemaître A Kondorosi M Crespi 2000 A Krüppel-like zinc finger protein is involved in nitrogen-fixing root nodule organogenesis Genes Dev 14 475 482
    • (2000) Genes Dev , vol.14 , pp. 475-482
    • Frugier, F.1    Poirier, S.2    Satiat-Jeunemaître, B.3    Kondorosi, A.4    Crespi, M.5
  • 24
    • 51349091195 scopus 로고    scopus 로고
    • Genetic map integration and comparative genome organisation of white clover (Trifolium repens L.) with model legume species
    • San Diego
    • George J, Cogan NOI, Smith KF, Spangenberg GC, Forster JW (2006a) Genetic map integration and comparative genome organisation of white clover (Trifolium repens L.) with model legume species. Plant and Animal Genome XIV, San Diego, pp 542
    • (2006) Plant and Animal Genome , vol.14 , pp. 542
    • George, J.1    Cogan, N.O.I.2    Smith, K.F.3    Spangenberg, G.C.4    Forster, J.W.5
  • 25
    • 33845427526 scopus 로고    scopus 로고
    • Assessment of genetic diversity in cultivars of white clover (Trifolium repens L.) detected by simple sequence repeat polymorphism
    • J George MP Dobrowolski E de Jong NOI Cogan KF Smith JW Forster 2006 Assessment of genetic diversity in cultivars of white clover (Trifolium repens L.) detected by simple sequence repeat polymorphism Genome 49 919 930
    • (2006) Genome , vol.49 , pp. 919-930
    • George, J.1    Dobrowolski, M.P.2    De Jong, E.3    Cogan, N.O.I.4    Smith, K.F.5    Forster, J.W.6
  • 27
    • 33646019843 scopus 로고    scopus 로고
    • A cotton dehydration-responsive element binding protein functions as a transcriptional repressor of DRE-mediated gene expression
    • B Huang JY Liu 2006 A cotton dehydration-responsive element binding protein functions as a transcriptional repressor of DRE-mediated gene expression Biochem Biophys Res Commun 343 1023 1031
    • (2006) Biochem Biophys Res Commun , vol.343 , pp. 1023-1031
    • Huang, B.1    Liu, J.Y.2
  • 31
    • 0035090478 scopus 로고    scopus 로고
    • Development and characterisation of simple sequence repeat (SSR) markers for white clover (Trifolium repens L.)
    • R Kölliker ES Jones MC Drayton MP Dupal JW Forster 2001 Development and characterisation of simple sequence repeat (SSR) markers for white clover (Trifolium repens L.) Theor Appl Genet 102 416 424
    • (2001) Theor Appl Genet , vol.102 , pp. 416-424
    • Kölliker, R.1    Jones, E.S.2    Drayton, M.C.3    Dupal, M.P.4    Forster, J.W.5
  • 33
    • 11144310731 scopus 로고    scopus 로고
    • Identification of SNPs and development of allelic specific PCR markers for high molecular weight glutenin subunit Dtx1.5 from Aegilops tauschii through sequence characterisation
    • CM Lu WY Yang WJ Zhang B-R Lu 2005 Identification of SNPs and development of allelic specific PCR markers for high molecular weight glutenin subunit Dtx1.5 from Aegilops tauschii through sequence characterisation J Cereal Sci 41 13 18
    • (2005) J Cereal Sci , vol.41 , pp. 13-18
    • Lu, C.M.1    Yang, W.Y.2    Zhang, W.J.3    Lu, B.-R.4
  • 37
    • 27844526579 scopus 로고    scopus 로고
    • Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana
    • M Mondragon-Palomino BS Gaut 2005 Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana Mol Biol Evol 22 2444 2456
    • (2005) Mol Biol Evol , vol.22 , pp. 2444-2456
    • Mondragon-Palomino, M.1    Gaut, B.S.2
  • 38
    • 14744269229 scopus 로고    scopus 로고
    • The evolutionary dynamics of plant duplicate genes
    • RC Moore MD Purugganan 2005 The evolutionary dynamics of plant duplicate genes Curr Op Plant Biol 8 122 128
    • (2005) Curr Op Plant Biol , vol.8 , pp. 122-128
    • Moore, R.C.1    Purugganan, M.D.2
  • 39
    • 0034016129 scopus 로고    scopus 로고
    • Organization and expression of two Arabidopsis DREB2 genes encoding DRE-binding proteins involved in dehydration- and high-salinity-responsive gene expression
    • K Nakashima ZK Shinwari Y Sakuma M Seki S Miura K Shinozaki K Yamaguchi-Shinozaki 2000 Organization and expression of two Arabidopsis DREB2 genes encoding DRE-binding proteins involved in dehydration- and high-salinity-responsive gene expression Plant Mol Biol 42 657 665
    • (2000) Plant Mol Biol , vol.42 , pp. 657-665
    • Nakashima, K.1    Shinwari, Z.K.2    Sakuma, Y.3    Seki, M.4    Miura, S.5    Shinozaki, K.6    Yamaguchi-Shinozaki, K.7
  • 40
    • 0028147885 scopus 로고
    • High-resolution cytological mapping of the long arm of chromosome 5A in common wheat using a series of deletion lines induced by gametocidal (Gc) genes of Aegilops speltoides
    • Y Ogihara K Hasegawa H Tsuijimoto 1994 High-resolution cytological mapping of the long arm of chromosome 5A in common wheat using a series of deletion lines induced by gametocidal (Gc) genes of Aegilops speltoides Mol Genet Genom 244 253 259
    • (1994) Mol Genet Genom , vol.244 , pp. 253-259
    • Ogihara, Y.1    Hasegawa, K.2    Tsuijimoto, H.3
  • 41
    • 34748868409 scopus 로고    scopus 로고
    • Molecular evolution of the Li/li chemical defence polymorphism in white clover (Trifolium repens L.)
    • KM Olsen BL Sutherland LL Small 2007 Molecular evolution of the Li/li chemical defence polymorphism in white clover (Trifolium repens L.) Mol Ecol 16 4180 4193
    • (2007) Mol Ecol , vol.16 , pp. 4180-4193
    • Olsen, K.M.1    Sutherland, B.L.2    Small, L.L.3
  • 42
    • 35248818724 scopus 로고    scopus 로고
    • SNP discovery, validation, haplotype structure and linkage disequilibrium in full-length herbage nutritive quality genes of perennial ryegrass (Lolium perenne L.)
    • RC Ponting MD Drayton NOI Cogan MP Dobrowolski KF Smith GC Spangenberg JW Forster 2007 SNP discovery, validation, haplotype structure and linkage disequilibrium in full-length herbage nutritive quality genes of perennial ryegrass (Lolium perenne L.) Mol Genet Genom 278 589 597
    • (2007) Mol Genet Genom , vol.278 , pp. 589-597
    • Ponting, R.C.1    Drayton, M.D.2    Cogan, N.O.I.3    Dobrowolski, M.P.4    Smith, K.F.5    Spangenberg, G.C.6    Forster, J.W.7
  • 44
    • 0028535436 scopus 로고
    • A dehydrin-cognate protein from pea (Pisum sativum L.) with an atypical pattern of expression
    • M Robertson PM Chandler 1994 A dehydrin-cognate protein from pea (Pisum sativum L.) with an atypical pattern of expression Plant Mol Biol 26 805 816
    • (1994) Plant Mol Biol , vol.26 , pp. 805-816
    • Robertson, M.1    Chandler, P.M.2
  • 45
    • 0035214543 scopus 로고    scopus 로고
    • Water stress-regulated gene expression in Cicer arietinum seedlings and plants
    • S Romo E Labrador B Dopico 2001 Water stress-regulated gene expression in Cicer arietinum seedlings and plants Plant Physiol Biochem 39 1017 1026
    • (2001) Plant Physiol Biochem , vol.39 , pp. 1017-1026
    • Romo, S.1    Labrador, E.2    Dopico, B.3
  • 46
    • 0033818174 scopus 로고    scopus 로고
    • Quantitative approach to single-nucleotide polymorphism analysis using MALDI-TOF mass spectrometry
    • 628-629
    • Ross P, Hall L, Haff LA (2000) Quantitative approach to single-nucleotide polymorphism analysis using MALDI-TOF mass spectrometry. BioTechniques 29: 620-6, 628-629
    • (2000) BioTechniques , vol.29 , pp. 620-626
    • Ross, P.1    Hall, L.2    Haff, L.A.3
  • 47
    • 2542420339 scopus 로고    scopus 로고
    • A comparison of sequence-based polymorphism and haplotype content in transcribed and anonymous regions of the barley genome
    • J Russell A Booth J Fuller B Harrower P Hedley G Machray W Powell 2004 A comparison of sequence-based polymorphism and haplotype content in transcribed and anonymous regions of the barley genome Genome 47 389 398
    • (2004) Genome , vol.47 , pp. 389-398
    • Russell, J.1    Booth, A.2    Fuller, J.3    Harrower, B.4    Hedley, P.5    MacHray, G.6    Powell, W.7
  • 49
    • 0000958361 scopus 로고
    • Origin of Fragaria polyploids. I. Cytological analysis
    • YDA Senanayake RS Bringhurst 1967 Origin of Fragaria polyploids. I. Cytological analysis Am J Bot 54 221 228
    • (1967) Am J Bot , vol.54 , pp. 221-228
    • Senanayake, Y.D.A.1    Bringhurst, R.S.2
  • 50
    • 4444243905 scopus 로고    scopus 로고
    • One potato, two potato: Haplotype association mapping in autotetraploids
    • I Simko 2004 One potato, two potato: haplotype association mapping in autotetraploids Trends Plant Sci 9 441 448
    • (2004) Trends Plant Sci , vol.9 , pp. 441-448
    • Simko, I.1
  • 51
    • 0033870718 scopus 로고    scopus 로고
    • Copy number lability and evolutionary dynamics of the Adh gene family in diploid and tetraploid cotton (Gossypium)
    • RL Small JF Wendel 2000 Copy number lability and evolutionary dynamics of the Adh gene family in diploid and tetraploid cotton (Gossypium) Genetics 155 1913 1926
    • (2000) Genetics , vol.155 , pp. 1913-1926
    • Small, R.L.1    Wendel, J.F.2
  • 52
    • 0042201892 scopus 로고    scopus 로고
    • Mining single-nucleotide polymorphisms from hexaploid wheat ESTs
    • DJ Somers R Kirkpatrick M Moniwa A Walsh 2003 Mining single-nucleotide polymorphisms from hexaploid wheat ESTs Genome 49 431 437
    • (2003) Genome , vol.49 , pp. 431-437
    • Somers, D.J.1    Kirkpatrick, R.2    Moniwa, M.3    Walsh, A.4
  • 53
    • 0030967111 scopus 로고    scopus 로고
    • Direct classification and selection of superior alleles for crop improvement
    • ME Sorrells WA Wilson 1997 Direct classification and selection of superior alleles for crop improvement Crop Sci 37 691 697
    • (1997) Crop Sci , vol.37 , pp. 691-697
    • Sorrells, M.E.1    Wilson, W.A.2
  • 55
    • 51349155982 scopus 로고    scopus 로고
    • Implementation of gene pair haplotypes provides evidence of the subgenome composition of cultivated strawberry (Fragaria × ananassa)
    • San Diego, January 2008
    • Tombolato DCM, Zhang K, Davis TM, Folta Km (2008) Implementation of gene pair haplotypes provides evidence of the subgenome composition of cultivated strawberry (Fragaria × ananassa). Plant and Animal Genome XVI, San Diego, January 2008, pp 666
    • (2008) Plant and Animal Genome , vol.16 , pp. 666
    • Tombolato, D.C.M.1    Zhang, K.2    Davis, T.M.3    Folta, Km.4
  • 56
    • 33846067713 scopus 로고    scopus 로고
    • Genome-scale identification and analysis of LEA genes in rice (Oryza sativa L.)
    • XS Wang HB Zhu GL Jin HL Liu WR Wu J Zhu 2007 Genome-scale identification and analysis of LEA genes in rice (Oryza sativa L.) Plant Sci 172 414 420
    • (2007) Plant Sci , vol.172 , pp. 414-420
    • Wang, X.S.1    Zhu, H.B.2    Jin, G.L.3    Liu, H.L.4    Wu, W.R.5    Zhu, J.6
  • 57
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • JF Wendel 2000 Genome evolution in polyploids Plant Mol Biol 42 225 249
    • (2000) Plant Mol Biol , vol.42 , pp. 225-249
    • Wendel, J.F.1
  • 58
    • 0344012538 scopus 로고    scopus 로고
    • Real-time polymerase chain reaction
    • J Wilhelm A Pingoud 2003 Real-time polymerase chain reaction Chembiochem 4 1120 1128
    • (2003) Chembiochem , vol.4 , pp. 1120-1128
    • Wilhelm, J.1    Pingoud, A.2
  • 59
    • 34248326866 scopus 로고    scopus 로고
    • Genome mapping of white clover (Trifolium repens L.) and comparative analysis within the Trifolieae using cross-species SSR markers
    • Y Zhang MK Sledge JH Bouton 2007 Genome mapping of white clover (Trifolium repens L.) and comparative analysis within the Trifolieae using cross-species SSR markers Theor Appl Genet 114 1367 1378
    • (2007) Theor Appl Genet , vol.114 , pp. 1367-1378
    • Zhang, Y.1    Sledge, M.K.2    Bouton, J.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.