Ascomycota Members Dominate Fungal Communities during Straw Residue Decomposition in Arable Soil

PLoS ONE

Volumn 8, Issue 6, 2013, Pages

  Ma, Anzhou ^a   Zhuang, Xuliang ^a   Wu, Junmei ^a   Cui, Mengmeng ^a   Lv, Di ^b   Liu, Chunzhao ^c   Zhuang, Guoqiang ^a  

^a RESEARCH CENTER FOR ECO ENVIRONMENTAL SCIENCES   (China)

^b INSTITUTE OF MICROBIOLOGY   (China)

^c INSTITUTE OF PROCESS ENGINEERING   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CELLULOSE; INTERNAL TRANSCRIBED SPACER;

ARABLE LAND; ARTICLE; ASCOMYCETES; CBHI GENE; COMMUNITY SUCCESSION; DENATURING GRADIENT GEL ELECTROPHORESIS; ENGYODONTIUM; FUNGAL COMMUNITY; FUNGAL GENE; GENETIC VARIABILITY; HYPOCREA; LECYTHOPHORA; LITTER DECOMPOSITION; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SORDARIALES; STRAW;

ASCOMYCOTA; BIODIVERSITY; CELLULOSE 1,4-BETA-CELLOBIOSIDASE; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; FUNGAL PROTEINS; GENETIC MARKERS; MOLECULAR SEQUENCE DATA; MOLECULAR TYPING; MYCOLOGICAL TYPING TECHNIQUES; ORYZA SATIVA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

ASCOMYCOTA; ENGYODONTIUM; HYPOCREA; LECYTHOPHORA; SORDARIALES;

EID: 84879274608     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0066146     Document Type: Article

References (42)

1. Lynd LR, Weimer PJ, van Zyl WH, Pretorius IS, (2002) Microbial cellulose utilization: Fundamentals and biotechnology. Microbiol Mol Biol Rev 66: 739-739.
2. Kwon YJ, Ma AZ, Li Q, Wang F, Zhuang GQ, et al. (2011) Effect of lignocellulosic inhibitory compounds on growth and ethanol fermentation of newly-isolated thermotolerant Issatchenkia orientalis. Bioresour Technol 102: 8099-8104.
3. Hadas A, Kautsky L, Goek M, Kara EE, (2004) Rates of decomposition of plant residues and available nitrogen in soil, related to residue composition through simulation of carbon and nitrogen turnover. Soil Biol Biochem 36: 255-266.
4. Wakelin SA, Colloff MJ, Harvey PR, Marschner P, Gregg AL, et al. (2007) The effects of stubble retention and nitrogen application on soil microbial community structure and functional gene abundance under irrigated maize. FEMS Microbiol Ecol 59: 661-670.
5. Wilson DB, (2011) Microbial diversity of cellulose hydrolysis. Curr Opin Microbiol 14: 259-263.
6. Voriskova J, Baldrian P, (2012) Fungal community on decomposing leaf litter undergoes rapid successional changes. ISME J 7: 477-486.
7. Lindahl BD, Ihrmark K, Boberg J, Trumbore SE, Hogberg P, et al. (2007) Spatial separation of litter decomposition and mycorrhizal nitrogen uptake in a boreal forest. New Phytol 173: 611-620.
8. Kellner H, Zak DR, Vandenbol M, (2010) Fungi unearthed: transcripts encoding lignocellulolytic and chitinolytic enzymes in forest soil. Plos One 5: e10971.
9. Osono T, (2006) Role of phyllosphere fungi of forest trees in the development of decomposer fungal communities and decomposition processes of leaf litter. Can J Microbiol 52: 701-716.
10. Osono T, Ishii Y, Takeda H, Seramethakun T, Khamyong S, et al. (2009) Fungal succession and lignin decomposition on Shorea obutsa leaves in a tropical seasonal forest in northern Thailand. Fungal Divers 36: 101-119.
11. Dilly O, Munch JC, (2004) Litter decomposition and microbial characteristics in agricultural soils in northern, central, and southern Germany. Soil Sci Plant Nutr 50: 843-853.
12. Johnson JMF, Barbour NW, Weyers SL, (2007) Chemical composition of crop biomass impacts its decomposition. Soil Sci Soc Am J 71: 155-162.
13. Bertrand I, Prevot M, Chabbert B, (2009) Soil decomposition of wheat internodes of different maturity stages: Relative impact of the soluble and structural fractions. Bioresour Technol 100: 155-163.
14. Wu JP, Liu ZF, Wang XL, Sun YX, Zhou LX, et al. (2011) Effects of understory removal and tree girdling on soil microbial community composition and litter decomposition in two Eucalyptus plantations in South China. Funct Ecol 25: 921-931.
15. Zhao J, Wang XL, Shao YH, Xu GL, Fu SL, (2011) Effects of vegetation removal on soil properties and decomposer organisms. Soil Biol Biochem 43: 954-960.
16. Dilly O, Bartsch S, Rosenbrock P, Buscot F, Munch JC, (2001) Shifts in physiological capabilities of the microbiota during the decomposition of leaf litter in a black alder (Alnus glutinosa (Gaertn.) L.) forest. Soil Biol Biochem 33: 921-930.
17. Nicolardot B, Bouziri L, Bastian F, Ranjard L, (2007) A microcosm experiment to evaluate the influence of location and quality of plant residues on residue decomposition and genetic structure of soil microbial communities. Soil Biol Biochem 39: 1631-1644.
18. Han X, Cheng ZH, Meng HW (2012) Soil properties, nutrient dynamics, and soil enzyme activities associated with garlic stalk decomposition under various conditions. Plos One 7.
19. Vandenkoornhuyse P, Baldauf SL, Leyval C, Straczek J, Young JPW, (2002) Evolution- Extensive fungal diversity in plant roots. Science 295: 2051-2051.
20. Bastian F, Bouziri L, Nicolardot B, Ranjard L, (2009) Impact of wheat straw decomposition on successional patterns of soil microbial community structure. Soil Biol Biochem 41: 262-275.
21. Osono T, Takeda H, (2006) Fungal decomposition of Abies needle and Betula leaf litter. Mycologia 98: 172-179.
22. Yelle DJ, Ralph J, Lu FC, Hammel KE, (2008) Evidence for cleavage of lignin by a brown rot basidiomycete. Environ Microbiol 10: 1844-1849.
23. Edwards IP, Upchurch RA, Zak DR, (2008) Isolation of fungal cellobiohydrolase I genes from sporocarps and forest soils by PCR. Appl Environ Microbiol 74: 3481-3489.
24. Friedl MA, Schmoll M, Kubicek CP, Druzhinina IS, (2008) Photostimulation of Hypocrea atroviridis growth occurs due to a cross-talk of carbon metabolism, blue light receptors and response to oxidative stress. Microbiology 154: 1229-1241.
25. Blackwood CB, Waldrop MP, Zak DR, Sinsabaugh RL, (2007) Molecular analysis of fungal communities and laccase genes in decomposing litter reveals differences among forest types but no impact of nitrogen deposition. Environ Microbiol 9: 1306-1316.
26. Anderson IC, Campbell CD, Prosser JI, (2003) Diversity of fungi in organic soils under a moorland-Scots pine (Pinus sylvestris L.) gradient. Environ Microbiol 5: 1121-1132.
27. Mondani L, Benzerara K, Carriere M, Christen R, Mamindy-Pajany Y, et al. (2011) Influence of uranium on bacterial communities: A comparison of natural uranium-rich soils with controls. Plos One 6: e25771.
28. Jacobsen J, Lydolph M, Lange L, (2005) Culture independent PCR: an alternative enzyme discovery strategy. J Microbiol Methods 60: 63-71.
29. Nilsson RH, Abarenkov K, Veldre V, Nylinder S, De Wit P, et al. (2010) An open source chimera checker for the fungal ITS region. Mol Ecol Resour 10: 1076-1081.
30. Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
31. Ma AZ, Hu Q, Qu YB, Bai ZH, Liu WF, et al. (2008) The enzymatic hydrolysis rate of cellulose decreases with irreversible adsorption of cellobiohydrolase I. Enzyme Microb Technol. 42: 543-547.
32. Snajdr J, Cajthaml T, Valaskova V, Merhautova V, Petrankova M, et al. (2011) Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition. FEMS Microbiol Ecol 75: 291-303.
33. Bernard L, Mougel C, Maron PA, Nowak V, Leveque J, et al. (2007) Dynamics and identification of soil microbial populations actively assimilating carbon from 13C-labelled wheat residue as estimated by DNA- and RNA-SIP techniques. Environ Microbiol 9: 752-764.
34. Lopez MJ, Vargas-Garcia MD, Suarez-Estrella F, Nichols NN, Dien BS, et al. (2007) Lignocellulose-degrading enzymes produced by the ascomycete Coniochaeta ligniaria and related species: Application for a lignocellulosic substrate treatment. Enzyme Microb Technol 40: 794-800.
35. Phosri C, Polme S, Taylor AFS, Koljalg U, Suwannasai N, et al. (2012) Diversity and community composition of ectomycorrhizal fungi in a dry deciduous dipterocarp forest in Thailand. Biodivers Conserv 21: 2287-2298.
36. Tian CG, Beeson WT, Iavarone AT, Sun JP, Marletta MA, et al. (2009) Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa. Proc Natl Acad Sci U S A 106: 22157-22162.
37. Ryckeboer J, Mergaert J, Vaes K, Klammer S, De Clercq D, et al. (2003) A survey of bacteria and fungi occurring during composting and self-heating processes. Ann Microbiol 53: 349-410.
38. Artham T, Doble M, (2010) Biodegradation of physicochemically treated polycarbonate by fungi. Biomacromolecules 11: 20-28.
39. Gomes J, Gomes I, Esterbauer H, Kreiner W, Steiner W, (1989) Production of cellulases by a wild strain of Gliocladium virens- optimization of the fermentation medium and partial characterization of the enzymes. Appl Microbiol Biotechnol 31: 601-608.
40. Ruan ZH, Zanotti M, Wang XQ, Ducey C, Liu Y, (2012) Evaluation of lipid accumulation from lignocellulosic sugars by Mortierella isabellina for biodiesel production. Bioresour Technol 110: 198-205.
41. Lundell TK, Makela MR, Hilden K, (2010) Lignin-modifying enzymes in filamentous basidiomycetes- ecological, functional and phylogenetic review. J Basic Microbiol 50: 5-20.
42. Duong LM, McKenzie EHC, Lumyong S, Hyde KD, (2008) Fungal succession on senescent leaves of Castanopsis diversifolia in Doi Suthep-Pui National Park, Thailand. Fungal Divers 30: 23-36.