Genetic Evidence of an East Asian Origin and Paleolithic Northward Migration of Y-chromosome Haplogroup N

PLoS ONE

Volumn 8, Issue 6, 2013, Pages

  Shi, Hong ^a   Qi, Xuebin ^a   Zhong, Hua ^a,b   Peng, Yi ^a   Zhang, Xiaoming ^a,c   Ma, Runlin Z ^b   Su, Bing ^a  

^a KUNMING INSTITUTE OF ZOOLOGY   (China)

^b INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^c UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ASIA; ASIAN; CAMBODIA; CHINA; CONTROLLED STUDY; EAST ASIA; EASTERN EUROPE; EUROPEAN AMERICAN; GENOTYPE; GEOGRAPHIC DISTRIBUTION; GEOGRAPHIC ORIGIN; HAPLOTYPE; HUMAN; ICE SHEET; JAPANESE; LAST GLACIAL MAXIMUM; MALE; PALEOLITHIC; PHYLOGEOGRAPHY; POPULATION DISPERSAL; POPULATION DISTRIBUTION; POPULATION MIGRATION; PREHISTORIC PERIOD; RUSSIAN FEDERATION; Y CHROMOSOME;

CAMBODIA; CHINA; CHROMOSOMES, HUMAN, Y; EUROPE; GENETIC MARKERS; GENETIC VARIATION; GENOTYPING TECHNIQUES; HAPLOTYPES; HUMAN MIGRATION; HUMANS; JAPAN; LAOS; MALE; MODELS, GENETIC; SIBERIA;

EID: 84879250482     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0066102     Document Type: Article

References (35)

1. Kumar V, Reddy AN, Babu JP, Rao TN, Langstieh BT, et al. (2007) Y-chromosome evidence suggests a common paternal heritage of Austro-Asiatic populations. BMC Evol Biol 7: 47.
2. Li H, Wen B, Chen SJ, Su B, Pramoonjago P, et al. (2008) Paternal genetic affinity between Western Austronesians and Daic populations. BMC Evol Biol 8: 146.
3. Rootsi S, Zhivotovsky LA, Baldovic M, Kayser M, Kutuev IA, et al. (2007) A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe. Eur J Hum Genet 15: 204-211.
4. Shi H, Dong YL, Wen B, Xiao CJ, Underhill PA, et al. (2005) Y-chromosome evidence of southern origin of the East Asian-specific haplogroup O3-M122. Am J Hum Genet 77: 408-419.
5. Shi H, Zhong H, Peng Y, Dong YL, Qi XB, et al. (2008) Y chromosome evidence of earliest modern human settlement in East Asia and multiple origins of Tibetan and Japanese populations. BMC Biol 6: 45.
6. Su B, Xiao J, Underhill P, Deka R, Zhang W, et al. (1999) Y-Chromosome evidence for a northward migration of modern humans into Eastern Asia during the last Ice Age. Am J Hum Genet 65: 1718-1724.
7. Zhong H, Shi H, Qi XB, Duan ZY, Tan PP, et al. (2011) Extended Y chromosome investigation suggests postglacial migrations of modern humans into East Asia via the northern route. Mol Biol Evol 28: 717-727.
8. Zhong H, Shi H, Qi XB, Xiao CJ, Jin L, et al. (2010) Global distribution of Y-chromosome haplogroup C reveals the prehistoric migration routes of African exodus and early settlement in East Asia. J Hum Genet 55: 428-435.
9. Lell JT, Sukernik RI, Starikovskaya YB, Su B, Jin L, et al. (2002) The dual origin and Siberian affinities of Native American Y chromosomes. Am J Hum Genet 70: 192-206.
10. Malyarchuk B, Derenko M, Denisova G, Wozniak M, Grzybowski T, et al. (2010) Phylogeography of the Y-chromosome haplogroup C in northern Eurasia. Ann Hum Genet 74: 539-546.
11. Zegura SL, Karafet TM, Zhivotovsky LA, Hammer MF, (2004) High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas. Mol Biol Evol 21: 164-175.
12. Balanovsky O, Rootsi S, Pshenichnov A, Kivisild T, Churnosov M, et al. (2008) Two sources of the Russian patrilineal heritage in their Eurasian context. Am J Hum Genet 82: 236-250.
13. Cai X, Qin Z, Wen B, Xu S, Wang Y, et al. (2011) Human migration through bottlenecks from Southeast Asia into East Asia during Last Glacial Maximum revealed by Y chromosomes. Plos One 6: e24282.
14. Capelli C, Brisighelli F, Scarnicci F, Arredi B, Caglia A, et al. (2007) Y chromosome genetic variation in the Italian peninsula is clinal and supports an admixture model for the Mesolithic-Neolithic encounter. Mol Phylogenet Evol 44: 228-239.
15. Cinnioglu C, King R, Kivisild T, Kalfoglu E, Atasoy S, et al. (2004) Excavating Y-chromosome haplotype strata in Anatolia. Hum Genet 114: 127-148.
16. Derenko M, Malyarchuk B, Denisova G, Wozniak M, Grzybowski T, et al. (2007) Y-chromosome haplogroup N dispersals from south Siberia to Europe. J Hum Genet 52: 763-770.
17. Gayden T, Cadenas AM, Regueiro M, Singh NB, Zhivotovsky LA, et al. (2007) The Himalayas as a directional barrier to gene flow. Am J Hum Genet 80: 884-894.
18. Gusmao A, Gusmao L, Gomes V, Alves C, Calafell F, et al. (2008) A perspective on the history of the Iberian gypsies provided by phylogeographic analysis of Y-chromosome lineages. Ann Hum Genet 72: 215-227.
19. Hammer MF, Karafet TM, Park H, Omoto K, Harihara S, et al. (2006) Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. J Hum Genet 51: 47-58.
20. He JD, Peng MS, Quang HH, Dang KP, Trieu AV, et al. (2012) Patrilineal perspective on the Austronesian diffusion in Mainland Southeast Asia. Plos One 7: e36437.
21. Karafet TM, Hallmark B, Cox MP, Sudoyo H, Downey S, et al. (2010) Major east-west division underlies Y chromosome stratification across Indonesia. Mol Biol Evol 27: 1833-1844.
22. King RJ, Ozcan SS, Carter T, Kalfoglu E, Atasoy S, et al. (2008) Differential Y-chromosome Anatolian influences on the Greek and Cretan Neolithic. Ann Hum Genet 72: 205-214.
23. Lopez-Parra AM, Gusmao L, Tavares L, Baeza C, Amorim A, et al. (2009) In search of the pre- and post-neolithic genetic substrates in Iberia: evidence from Y-chromosome in Pyrenean populations. Ann Hum Genet 73: 42-53.
24. Martinez L, Underhill PA, Zhivotovsky LA, Gayden T, Moschonas NK, et al. (2007) Paleolithic Y-haplogroup heritage predominates in a Cretan highland plateau. Eur J Hum Genet 15: 485-493.
25. Mirabal S, Regueiro M, Cadenas AM, Cavalli-Sforza LL, Underhill PA, et al. (2009) Y-chromosome distribution within the geo-linguistic landscape of northwestern Russia. Eur J Hum Genet 17: 1260-1273.
26. Nonaka I, Minaguchi K, Takezaki N, (2007) Y-chromosomal binary haplogroups in the Japanese population and their relationship to 16 Y-STR polymorphisms. Ann Hum Genet 71: 480-495.
27. Sengupta S, Zhivotovsky LA, King R, Mehdi SQ, Edmonds CA, et al. (2006) Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists. Am J Hum Genet 78: 202-221.
28. Lappalainen T, Koivumaki S, Salmela E, Huoponen K, Sistonen P, et al. (2006) Regional differences among the Finns: a Y-chromosomal perspective. Gene 376: 207-215.
29. Lappalainen T, Laitinen V, Salmela E, Andersen P, Huoponen K, et al. (2008) Migration waves to the Baltic Sea region. Ann Hum Genet 72: 337-348.
30. Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, et al. (2008) New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res 18: 830-838.
31. Butler JM, Schoske R, Vallone PM, Kline MC, Redd AJ, et al. (2002) A novel multiplex for simultaneous amplification of 20 Y chromosome STR markers. Forensic Sci Int 129: 10-24.
32. Bandelt HJ, Forster P, Rohl A, (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48.
33. Zhivotovsky LA, (2001) Estimating divergence time with the use of microsatellite genetic distances: impacts of population growth and gene flow. Mol Biol Evol 18: 700-709.
34. Zhivotovsky LA, Underhill PA, Cinnioglu C, Kayser M, Morar B, et al. (2004) The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time. Am J Hum Genet 74: 50-61.
35. Peakall R, Smouse P (2012) GenAlEx 6.5: Genetic analysis in Excel. Population genetic software for teaching and research - an update. Bioinformatics.