Comparative analysis and distribution of pP9014, a novel drug resistance IncP-1 plasmid from Photobacterium damselae subsp. piscicida

International Journal of Antimicrobial Agents

Volumn 42, Issue 1, 2013, Pages 10-18

  Del Castillo, Carmelo S ^a,e   Jang, Ho Bin ^a   Hikima, Jun Ichi ^a   Jung, Tae Sung ^a   Morii, Hideaki ^b   Hirono, Ikuo ^c   Kondo, Hidehiro ^c   Kurosaka, Chihiro ^c   Aoki, Takashi ^a,d  

^a Gyeongsang National University   (South Korea)

^b BEPPU UNIVERSITY   (Japan)

^c TOKYO UNIVERSITY OF MARINE SCIENCE AND TECHNOLOGY   (Japan)

^d WASEDA UNIVERSITY   (Japan)

^e STONY BROOK UNIVERSITY   (United States)

Author keywords

Horizontal gene transfer; Multidrug resistance; R plasmid

Indexed keywords

AMPICILLIN; CHLORAMPHENICOL; FOSFOMYCIN; KANAMYCIN; SULFAMETHOXAZOLE; TETRACYCLINE; TRIMETHOPRIM;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; CONTROLLED STUDY; GAMMAPROTEOBACTERIA; GC RICH SEQUENCE; GENE ISOLATION; GENETIC INCOMPATIBILITY; GENETIC PROCEDURES; GENOME SIZE; HORIZONTAL GENE TRANSFER; JAPAN; MARINOBACTER; MARINOBACTER ADHAERENS; METHYLOPHAGA; MOLECULAR PROBE; MULTIDRUG RESISTANCE; NEXT GENERATION SEQUENCING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHOTOBACTERIUM DAMSELAE PISCICIDA; PLASMID; PLASMID INCP 1; PLASMID PP9014; PLASMID PP99 018; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SOIL MICROFLORA; TRA GENE; TRB GENE;

ANIMALS; BASE COMPOSITION; CLUSTER ANALYSIS; DRUG RESISTANCE, BACTERIAL; GENES, BACTERIAL; HUMANS; JAPAN; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PERCIFORMES; PHOTOBACTERIUM; PHYLOGENY; PLASMIDS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

EID: 84879206502     PISSN: 09248579     EISSN: 18727913     Source Type: Journal    
DOI: 10.1016/j.ijantimicag.2013.02.027     Document Type: Article

References (30)

1. S.F. Snieszko Antibiotics in fish diseases and fish nutrition Antibiot Chemother 9 1959 541 545
2. C.F. Amabile-Cuevas, and M.E. Chicurel Bacterial plasmids and gene flux Cell 70 1992 189 199
3. A. Norman, L.H. Hansen, and S.J. Sorensen Conjugative plasmids: vessels of the communal gene pool Philos Trans R Soc Lond B Biol Sci 364 2009 2275 2289
4. CMY-2-positive broad-host-range IncA/C plasmid Appl Environ Microbiol 78 2012 3379 3386
5. R.I. Aminov Horizontal gene exchange in environmental microbiota Front Microbiol 2 2011 158
6. M. Kimura, and T. Kitao On the etiological agent of 'bacterial tuberculosis' of Seriola Fish Pathol 6 1971 8 14
7. T. Aoki Drug-resistant plasmids from fish pathogens Microbiol Sci 5 1988 219 223
8. E.H. Kim, and T. Aoki Drug resistance and broad geographical distribution of identical R plasmids of Pasteurella piscicida isolated from cultured yellowtail in Japan Microbiol Immunol 37 1993 103 109
9. H. Morii, M.S. Bharadwaj, and N. Eto Cloning and nucleotide sequence analysis of the ampicillin resistance gene on a conjugative R plasmid from the fish pathogen Photobacterium damselae subsp. piscicida J Aquat Anim Health 16 2004 197 207
10. H. Morii, N. Hayashi, and K. Uramoto Cloning and nucleotide sequence analysis of the chloramphenicol resistance gene on conjugative R plasmids from the fish pathogen Photobacterium damselae subsp. piscicida Dis Aquat Organ 53 2003 107 113
11. H. Morii, and Y. Ishikawa Cloning and nucleotide sequence analysis of the chloramphenicol and erythromycin resistance genes on a transferable R plasmid from the fish pathogen Photobacterium damselae subsp. piscicida Bull Fac Fish Nagasaki Univ 93 2012 41 50
12. E.H. Kim, and T. Aoki The transposon-like structure of IS26-tetracycline, and kanamycin resistance determinant derived from transferable R plasmid of fish pathogen, Pasteurella piscicida Microbiol Immunol 38 1994 31 38
13. M.J. Kim, I. Hirono, K. Kurokawa, T. Maki, J. Hawke, and H. Kondo Complete DNA sequence and analysis of the transferable multiple-drug resistance plasmids (R plasmids) from Photobacterium damselae subsp. piscicida isolates collected in Japan and the United States Antimicrob Agents Chemother 52 2008 606 611
14. C.S. Del Castillo, J.I. Hikima, H.B. Jang, S.W. Nho, T.S. Jung, and J. Wongtavatchai Comparative sequence analysis of a multidrug-resistant plasmid from Aeromonas hydrophila Antimicrob Agents Chemother 57 2013 120 129
15. G. Lima-Mendez, J. Van Helden, A. Toussaint, and R. Leplae Reticulate representation of evolutionary and functional relationships between phage genomes Mol Biol Evol 25 2008 762 777
16. A. Gardes, E. Kaeppel, A. Shehzad, S. Seebah, H. Teeling, and P. Yarza Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism Stand Genomic Sci 3 2010 97 107
17. J. Auclair, F. Lepine, S. Parent, and R. Villemur Dissimilatory reduction of nitrate in seawater by a Methylophaga strain containing two highly divergent narG sequences ISME J 4 2010 1302 1313
18. P.B. Thorsted, D.P. Macartney, P. Akhtar, A.S. Haines, N. Ali, and P. Davidson Complete sequence of the IncPβ plasmid R751: implications for evolution and organisation of the IncP backbone J Mol Biol 282 1998 969 990
19. M.I. Bahl, L.H. Hansen, and S.J. Sorensen Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations FEMS Microbiol Lett 266 2007 250 256
20. D. Sen, H. Yano, H. Suzuki, J.E. Król, L. Rogers, and C.J. Brown Comparative genomics of pAKD4, the prototype IncP-1δ plasmid with a complete backbone Plasmid 63 2010 98 107
21. P. Norberg, M. Bergstrom, V. Jethava, D. Dubhashi, and M. Hermansson The IncP-1 plasmid backbone adapts to different host bacterial species and evolves through homologous recombination Nat Commun 2 2011 268
22. M. Adamczyk, and G. Jagura-Burdzy Spread and survival of promiscuous IncP-1 plasmids Acta Biochim Pol 50 2003 425 453
23. C.M. Thomas, and D.R. Helinski Vegetative replication and stable inheritance of IncP plasmids C.M. Thomas, Promiscuous plasmids of Gram-negative bacteria 1989 Academic Press, Ltd. San Diego, CA 1 25
24. A. Schluter, R. Szczepanowski, A. Puhler, and E.M. Top Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool FEMS Microbiol Rev 31 2007 449 477
25. X.X. Zhang, T. Zhang, and H.H. Fang Antibiotic resistance genes in water environment Appl Microbiol Biotechnol 82 2009 397 414
26. N. Galtier, and J.R. Lobry Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes J Mol Evol 44 1997 632 636
27. J.G. Lawrence, and H. Ochman Molecular archaeology of the Escherichia coli genome Proc Natl Acad Sci USA 95 1998 9413 9417
28. M.I. Bahl, L.H. Hansen, A. Goesmann, and S.J. Sorensen The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established α, β and δ sub-groups Plasmid 58 2007 31 43
29. S. Vuilleumier, V.N. Khmelenina, F. Bringel, A.S. Reshetnikov, A. Lajus, and S. Mangenot Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z J Bacteriol 194 2012 551 552
30. H. Morii, I. Nishibata, Y. Tutui, K. Uramoto, K. Kanai, and M.S. Bharadwaj Conjugation transferability of drug resistances in the fish pathogen, Photobacterium damselae subsp. piscicida Bull Fac Fish Nagasaki Univ 84 2003 53 56 Technology