메뉴 건너뛰기




Volumn 3, Issue 2, 2010, Pages 97-107

Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism

Author keywords

Attachment; Diatoms; Marine aggregate formation; Marine heterotrophic bacteria

Indexed keywords

ALGAE; BACILLARIOPHYTA; BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; MARINOBACTER; MARINOBACTER ALGICOLA; MARINOBACTER FLAVIMARIS; NEGIBACTERIA; THALASSIOSIRA WEISSFLOGII;

EID: 80053441034     PISSN: 19443277     EISSN: None     Source Type: Journal    
DOI: 10.4056/sigs.922139     Document Type: Article
Times cited : (46)

References (37)
  • 1
    • 84860465103 scopus 로고    scopus 로고
    • Marinobacter adhaerens sp. nov., prominent in aggregate formation with the diatom Thalassiosira weissflogii
    • Submitted
    • Kaeppel EC, Gärdes A, Seebah S, Grossart HP, Ullrich MS. Marinobacter adhaerens sp. nov., prominent in aggregate formation with the diatom Thalassiosira weissflogii. Int J Syst Evol Microbiol 2010; (Submitted).
    • (2010) Int J Syst Evol Microbiol
    • Kaeppel, E.C.1    Gärdes, A.2    Seebah, S.3    Grossart, H.P.4    Ullrich, M.S.5
  • 2
    • 1542301441 scopus 로고    scopus 로고
    • Antagonistic activity of bacteria isolated from organic aggregates of the German Wadden Sea
    • PubMed doi:10.1016/S0168-6496(03)00305-2
    • Grossart HP, Schlingloff A, Bernhard M, Simon M, Brinkhoff T. Antagonistic activity of bacteria isolated from organic aggregates of the German Wadden Sea. FEMS Microbiol Ecol 2004; 47:387-396.PubMed doi:10.1016/S0168-6496(03)00305-2
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 387-396
    • Grossart, H.P.1    Schlingloff, A.2    Bernhard, M.3    Simon, M.4    Brinkhoff, T.5
  • 3
    • 79951810078 scopus 로고    scopus 로고
    • Diatom-associated bacteria are required for Thalassiosira weissflogii aggregation
    • In press, PubMed doi:10.1038/ismej.2010.145
    • Gärdes A, Iversen M, Grossart H, Passow U, Ullrich MS. Diatom-associated bacteria are required for Thalassiosira weissflogii aggregation. ISME J 2010; (In press).PubMed doi:10.1038/ismej.2010.145
    • (2010) ISME J
    • Gärdes, A.1    Iversen, M.2    Grossart, H.3    Passow, U.4    Ullrich, M.S.5
  • 4
    • 0000472072 scopus 로고
    • Role of large particles in the transport of elements and organic compounds through the oceanic water column
    • doi:10.1016/0079-6611(86)90032-7
    • Fowler SW, Knauer GA. Role of large particles in the transport of elements and organic compounds through the oceanic water column. Prog Ocea-nogr 1986; 16:147-194.doi:10.1016/0079-6611(86)90032-7
    • (1986) Prog Ocea-nogr , vol.16 , pp. 147-194
    • Fowler, S.W.1    Knauer, G.A.2
  • 5
    • 0024228913 scopus 로고
    • Characteristics, dynamics and significance of marine snow
    • doi:10.1016/0079-6611(88)90053-5
    • Alldredge AL, Silver MW. Characteristics, dynamics and significance of marine snow. Prog Oceanogr 1988; 20:41-82.doi:10.1016/0079-6611(88)90053-5
    • (1988) Prog Oceanogr , vol.20 , pp. 41-82
    • Alldredge, A.L.1    Silver, M.W.2
  • 6
    • 0036455093 scopus 로고    scopus 로고
    • Transparent exopolymer particles (TEP) in aquatic environments
    • doi:10.1016/S0079-6611(02)00138-6
    • Passow U. Transparent exopolymer particles (TEP) in aquatic environments. Prog Oceanogr 2002; 55:287-333.doi:10.1016/S0079-6611(02)00138-6
    • (2002) Prog Oceanogr , vol.55 , pp. 287-333
    • Passow, U.1
  • 7
    • 0037178039 scopus 로고    scopus 로고
    • Microbial ecology of organic aggregates in aquatic ecosystems
    • doi:10.3354/ame028175
    • Simon M, Grossart HP, Schweitzer B, Ploug H. Microbial ecology of organic aggregates in aquatic ecosystems. Aquat Microb Ecol 2002; 28:175-211.doi:10.3354/ame028175
    • (2002) Aquat Microb Ecol , vol.28 , pp. 175-211
    • Simon, M.1    Grossart, H.P.2    Schweitzer, B.3    Ploug, H.4
  • 9
    • 43449108562 scopus 로고    scopus 로고
    • Towards a richer description of our complete collection of genomes and metage-nomes: The "Minimum Information about a Genome Sequence" (MIGS) specification
    • PubMed doi:10.1038/nbt1360
    • Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, An-giuoli SV. Towards a richer description of our complete collection of genomes and metage-nomes: the "Minimum Information about a Genome Sequence" (MIGS) specification. Nat Biotechnol 2008; 26:541-547.PubMed doi:10.1038/nbt1360
    • (2008) Nat Biotechnol , vol.26 , pp. 541-547
    • Field, D.1    Garrity, G.2    Gray, T.3    Morrison, N.4    Selengut, J.5    Sterk, P.6    Tatusova, T.7    Thomson, N.8    Allen, M.J.9    An-Giuoli, S.V.10
  • 10
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • PubMed doi:10.1073/pnas.87.12.4576
    • Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990; 87:4576-4579.PubMed doi:10.1073/pnas.87.12.4576
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 11
    • 0000685441 scopus 로고    scopus 로고
    • The Road Map to the Manual
    • In: Garrity GM, Boone DR, Castenholz RW (eds), Second Edition, Springer, New York
    • Garrity GM, Holt JG. The Road Map to the Manual. In: Garrity GM, Boone DR, Castenholz RW (eds), Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 1, Springer, New York, 2001, p. 119-169.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 119-169
    • Garrity, G.M.1    Holt, J.G.2
  • 12
    • 77951218993 scopus 로고    scopus 로고
    • Validation of publication of new names and new combinations previously effectively published outside the IJSEM. List no. 106
    • List Editor, doi:10.1099/ijs.0.64108-0
    • List Editor. Validation of publication of new names and new combinations previously effectively published outside the IJSEM. List no. 106. Int J Syst Evol Microbiol 2005; 55:2235-2238. doi:10.1099/ijs.0.64108-0
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 2235-2238
  • 13
    • 33646193540 scopus 로고    scopus 로고
    • Gamma-proteobacteria class. nov
    • In: Garrity GM, Brenner DJ, Krieg NR, Staley JT, (eds), Part B, Second Edition, Springer, New York
    • Garrity GM, Bell JA, Lilburn T. Class III. Gamma-proteobacteria class. nov. In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds), Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 2, Part B, Springer, New York, 2005, p. 1.
    • (2005) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 1
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3    Class, I.I.I.4
  • 14
    • 77957220399 scopus 로고    scopus 로고
    • Order X. Alteromonadales ord. no
    • In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds), Second Edition, Part B, Springer, New York
    • Bowman JP, McMeekin TA. Order X. Alteromonadales ord. nov. In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds), Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 2, Part B, Springer, New York, 2005, p. 443.
    • (2005) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 44
    • Bowman, J.P.1    McMeekin, T.A.2
  • 15
    • 0034928555 scopus 로고    scopus 로고
    • Validation List no. 81. Validation of publication of new names and new combinations previously effectively published outside the IJ-SEM
    • List Editor, PubMed
    • List Editor. Validation List no. 81. Validation of publication of new names and new combinations previously effectively published outside the IJ-SEM. Int J Syst Evol Microbiol 2001; 51:1229.PubMed
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 1229
  • 16
    • 0013196907 scopus 로고    scopus 로고
    • A new family, Altero-monadaceae fam. nov., including marine proteo-bacteria of the genera Alteromonas, Pseudoalte-romonas, Idiomarina, and Colwellia
    • doi:10.1023/A:1004876301036
    • Ivanova EP, Mikhailov VV. A new family, Altero-monadaceae fam. nov., including marine proteo-bacteria of the genera Alteromonas, Pseudoalte-romonas, Idiomarina, and Colwellia. Microbiology 2001; 70:10-17.doi:10.1023/A:1004876301036
    • (2001) Microbiology , vol.70 , pp. 10-17
    • Ivanova, E.P.1    Mikhailov, V.V.2
  • 17
    • 5444228838 scopus 로고    scopus 로고
    • Phylogenetic relationships among marine Alteromonas-like proteobacteria: Emended description of the family Alteromonadaceae and proposal of Pseudoalte-romonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomari-naceae fam. nov. and Psychromonadaceae fam. nov
    • PubMed doi:10.1099/ijs.0.02997-0
    • Ivanova EP, Flavier S, Christen R. Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalte-romonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomari-naceae fam. nov. and Psychromonadaceae fam. nov. Int J Syst Evol Microbiol 2004; 54:1773-1788.PubMed doi:10.1099/ijs.0.02997-0
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1773-1788
    • Ivanova, E.P.1    Flavier, S.2    Christen, R.3
  • 18
    • 0026688315 scopus 로고
    • Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium
    • PubMed doi:10.1099/00207713-42-4-568
    • Gauthier MJ, Lafay B, Christen R, Fernandez L, Acquaviva M, Bonin P, Bertrand JC. Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium. Int J Syst Bacteriol 1992; 42:568-576.PubMed doi:10.1099/00207713-42-4-568
    • (1992) Int J Syst Bacteriol , vol.42 , pp. 568-576
    • Gauthier, M.J.1    Lafay, B.2    Christen, R.3    Fernandez, L.4    Acquaviva, M.5    Bonin, P.6    Bertrand, J.C.7
  • 19
    • 38549144166 scopus 로고    scopus 로고
    • The Genome On Line Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata
    • PubMed doi:10.1093/nar/gkm884
    • Liolios K, Mavromatis K, Tavernarakis N, Kyrpides NC. The Genome On Line Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 2008; 36:D475-D479.PubMed doi:10.1093/nar/gkm884
    • (2008) Nucleic Acids Res , vol.36
    • Liolios, K.1    Mavromatis, K.2    Tavernarakis, N.3    Kyrpides, N.C.4
  • 20
    • 33645217309 scopus 로고    scopus 로고
    • Marinobacter algicola sp. nov., isolated from laboratory cultures of paralytic shell-fish toxin-producing dinoflagellates
    • PubMed doi:10.1099/ijs.0.63447-0
    • Green DH, Bowman JP, Smith EA, Gutierrez T, Bolch CJS. Marinobacter algicola sp. nov., isolated from laboratory cultures of paralytic shell-fish toxin-producing dinoflagellates. Int J Syst Evol Microbiol 2006; 56:523-527.PubMed doi:10.1099/ijs.0.63447-0
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 523-527
    • Green, D.H.1    Bowman, J.P.2    Smith, E.A.3    Gutierrez, T.4    Bolch, C.J.S.5
  • 21
    • 13244283299 scopus 로고    scopus 로고
    • Marinobacter bryozoorum sp. nov. and Marinobacter sedimi-num sp. nov., novel bacteria from the marine en-vironment
    • PubMed doi:10.1099/ijs.0.63258-0
    • Romanenko LA, Schumann P, Rohde M, Zhukova NV, Mikhailov VV, Stackebrandt E. Marinobacter bryozoorum sp. nov. and Marinobacter sedimi-num sp. nov., novel bacteria from the marine en-vironment. Int J Syst Evol Microbiol 2005; 55:143-148. PubMed doi:10.1099/ijs.0.63258-0
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 143-148
    • Romanenko, L.A.1    Schumann, P.2    Rohde, M.3    Zhukova, N.V.4    Mikhailov, V.V.5    Stackebrandt, E.6
  • 24
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelih-ood-based phylogenetic analyses with thousands of taxa and mixed models
    • PubMed doi:10.1093/bioinformatics/btl446
    • Stamatakis A. RAxML-VI-HPC: maximum likelih-ood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006; 22:2688.PubMed doi:10.1093/bioinformatics/btl446
    • (2006) Bioinformatics , vol.22 , pp. 2688
    • Stamatakis, A.1
  • 26
    • 0002685935 scopus 로고
    • Studies on marine bacteria. I. The cultural requirements of heterotrophic aerobes
    • Zobell CE. Studies on marine bacteria. I. The cultural requirements of heterotrophic aerobes. J Mar Res 1941; 4:42-75.
    • (1941) J Mar Res , vol.4 , pp. 42-75
    • Zobell, C.E.1
  • 27
    • 34147132825 scopus 로고    scopus 로고
    • Identifying bacterial genes and endosymbiont DNA with Glimmer
    • PubMed doi:10.1093/bioinformatics/btm009
    • Delcher AL, Bratke KA, Powers EC, Salzberg SL. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 2007; 23:673-679.PubMed doi:10.1093/bioinformatics/btm009
    • (2007) Bioinformatics , vol.23 , pp. 673-679
    • Delcher, A.L.1    Bratke, K.A.2    Powers, E.C.3    Salzberg, S.L.4
  • 28
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • PubMed doi:10.1093/nar/25.5.955
    • Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997; 25:955-964.PubMed doi:10.1093/nar/25.5.955
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 31
    • 34248531753 scopus 로고    scopus 로고
    • Locating proteins in the cell using TargetP, SignalP and related tools
    • PubMed doi:10.1038/nprot.2007.131
    • Emanuelsson O, Brunak S, Von Heijne G, Nielsen H. Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2007; 2:953-971.PubMed doi:10.1038/nprot.2007.131
    • (2007) Nat Protoc , vol.2 , pp. 953-971
    • Emanuelsson, O.1    Brunak, S.2    von Heijne, G.3    Nielsen, H.4
  • 32
    • 0033044637 scopus 로고    scopus 로고
    • Machine learning approaches for the prediction of signal peptides and other protein sorting signals
    • PubMed doi:10.1093/protein/12.1.3
    • Nielsen H, Brunak S, Von Heijne G. Machine learning approaches for the prediction of signal peptides and other protein sorting signals. Protein Eng 1999; 12:3-9.PubMed doi:10.1093/protein/12.1.3
    • (1999) Protein Eng , vol.12 , pp. 3-9
    • Nielsen, H.1    Brunak, S.2    von Heijne, G.3
  • 33
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • PubMed doi:10.1006/jmbi.2000.4315
    • Krogh A, Larsson B, Von Heijne G, Sonnhammer EL. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 2001; 305:567-580.PubMed doi:10.1006/jmbi.2000.4315
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.4
  • 34
    • 33750475109 scopus 로고    scopus 로고
    • MicHanThi - design and implementation of a system for the prediction of gene functions in genome annotation projects
    • Available on request)
    • Quast C. MicHanThi - design and implementation of a system for the prediction of gene functions in genome annotation projects. Master Thesis 2006 (Available on request).
    • (2006) Master Thesis
    • Quast, C.1
  • 36
    • 0031724115 scopus 로고    scopus 로고
    • Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development
    • PubMed doi:10.1046/j.1365-2958.1998.01062.x
    • O'Toole GA, Kolter R. Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development. Mol Microbiol 1998; 30:295-304.PubMed doi:10.1046/j.1365-2958.1998.01062.x
    • (1998) Mol Microbiol , vol.30 , pp. 295-304
    • O'Toole, G.A.1    Kolter, R.2
  • 37
    • 33748874852 scopus 로고    scopus 로고
    • From The Origin of Species to the origin of bacterial flagella
    • PubMed doi:10.1038/nrmicro1493
    • Pallen MJ, Matzke NJ. From The Origin of Species to the origin of bacterial flagella. Nat Rev Microbiol 2006; 4:784-790.PubMed doi:10.1038/nrmicro1493
    • (2006) Nat Rev Microbiol , vol.4 , pp. 784-790
    • Pallen, M.J.1    Matzke, N.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.