Shift in the hepatitis B virus genotype distribution in the last decade among the HBV carriers from eastern India: Possible effects on the disease status and hbv epidemiology

Journal of Medical Virology

Volumn 85, Issue 8, 2013, Pages 1340-1347

  Biswas, Avik ^a   Panigrahi, Rajesh ^a   Pal, Manisha ^b   Chakraborty, Subhasis ^c   Bhattacharya, Prasun ^c   Chakrabarti, Shekhar ^d   Chakravarty, Runu ^a  

^a INDIAN COUNCIL OF MEDICAL RESEARCH   (India)

^b UNIVERSITY OF CALCUTTA   (India)

^c Institute of Blood Transfusion Medicine and Immunohematology   (India)

^d NATIONAL INSTITUTE OF CHOLERA AND ENTERIC DISEASES   (India)

Author keywords

Alteration in disease status; HBV epidemiology; HBV genotype shift; HBV genotypes

Indexed keywords

VIRUS DNA;

ADULT; ARTICLE; CHRONIC LIVER DISEASE; CONTROLLED STUDY; FEMALE; GENE MUTATION; GENETIC ASSOCIATION; GENOTYPE; HEPATITIS B VIRUS; HUMAN; INDIA; MAJOR CLINICAL STUDY; MALE; NUCLEOTIDE SEQUENCE; ORTHOHEPADNAVIRUS; PREVALENCE; VIRUS CARRIER;

ADULT; CARRIER STATE; FEMALE; GENOTYPE; HEPATITIS B; HEPATITIS B VIRUS; HUMANS; INDIA; MALE; MIDDLE AGED; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; PREVALENCE; SEQUENCE ANALYSIS, DNA; YOUNG ADULT;

HEPATITIS B VIRUS;

EID: 84879168404     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.23628     Document Type: Article

References (41)

1. Abe A, Inoue K, Tanaka T, Kato J, Kajiyama N, Kawaguchi R, Tanaka S, Yoshiba M, Kohara M. 1999. Quantitation of hepatitis B virus genomic DNA by real-time detection PCR. J Clin Microbiol 37:2899-2903.
2. Araujo NM, Waizbort R, Kay A. 2011. Hepatitis B virus infection from an evolutionary point of view: How viral, host, and environmental factors shape genotypes and subgenotypes. Infect Genet Evol 11:1199-1207.
3. Banerjee A, Banerjee S, Chowdhury A, Santra A, Chowdhury S, Roychowdhury S, Panda CK, Bhattacharya SK, Chakravarty R. 2005. Nucleic acid sequence analysis of BCP/precore/core region of hepatitis B virus isolated from chronic carriers of the virus from Kolkata, Eastern India: Low frequency of mutation in the precore region. Intervirology 48:389-399.
4. Banerjee A, Datta S, Chandra PK, Roychowdhury S, Panda CK, Chakravarty R. 2006a. Distribution of hepatitis B virus genotypes: Phylogenetic analysis and virological characteristics of genotype C circulating among HBV carriers in Kolkata, Eastern India. World J Gastroenterol 12:5964-5971.
5. Banerjee A, Kurbanov F, Datta S, Chandra PK, Tanaka Y, Mizokami M, Chakravarty R. 2006b. Phylogenetic relatedness and genetic diversity of hepatitis B virus isolates in Eastern India. J Med Virol 78:1164-1174.
6. Baumert TF, Rogers SA, Hasegawa K, Liang TJ. 1996. Two core promotor mutations identified in a hepatitis B virus strain associated with fulminant hepatitis result in enhanced viral replication. J Clin Invest 98:2268-2276.
7. Biswas A, Banerjee A, Chandra PK, Datta S, Panigrahi R, Dutta D, De BK Pal M, Guha SK, Chakrabarti S, Chakravarty R. 2011. Variations in the functional domain of basal core promoter of hepatitis B virus among Eastern Indian patients with prevalence of genotypes A, C, and D among the same ethnic population. J Med Virol 83:253-260.
8. Biswas A, Chandra PK, Datta S, Panigrahi R, Banerjee A, Chakrabarti S, Biswas K, Patra D, Bhattacharya P, Biswas K, Chakravarty R. 2009. Frequency and distribution of hepatitis B virus genotypes among eastern Indian voluntary blood donors: Association with precore and basal core promoter mutations. Hepatol Res 39:53-59.
9. Cabrerizo M, Bartolome J, Caramelo C, Barril G, Carreno V. 2000. Molecular analysis of hepatitis B virus DNA in serum and peripheral blood mononuclear cells from hepatitis B surface antigen negative cases. Hepatology 32:116-123.
10. Cao GW. 2009. Clinical relevance and public health significance of hepatitis B virus genomic variations. World J Gastroenterol 15:5761-5769.
11. Chakravarty R, Chowdhury A, Chaudhuri S, Santra A, Neogi M, Raendran K, Panda CK, Chakravarty M. 2005. Hepatitis B infection in Eastern Indian families: Need for screening of adult siblings and mothers of adult index cases. Public Health 119:647-654.
12. Chandra PK, Banerjee A, Datta S, Chakravarty R. 2007. G1862T mutation among Hepatitis B virus-infected individuals: Association with viral genotypes and disease outcome in Kolkata, eastern India. Intervirology 50:173-180.
13. Chaudhuri S, Das S, Chowdhury A, Santra A, Bhattacharya SK, Naik TN. 2005. Molecular epidemiology of HCV infection among acute and chronic liver disease patients in Kolkata, India. J Clin Virol 32:38-46.
14. Datta S, Biswas A, Chandra PK, Banerjee A, Panigrahi R, Mahapatra PK, Chakrabarti S, Panda CK, Chakravarty R. 2008. Molecular epidemiology and clinical significance of hepatitis B virus genotypes, core promoter and precore mutation in eastern India. Intervirology 51:275-284.
15. Doung TN, Horiike N, Michitaka K, Yan C, Mizokami M, Tanaka Y, Jyoko K, Yamamoto K, Miyaoka H, Yamashita Y, Ohno N, Onji M. 2004. Comparison of genotypes C and D of the hepatitis B virus in Japan: A clinical and molecular biological study. J Med Virol 72:551-557.
16. Jutavijittum P, Jiviriyawat Y, Yousukh A, Kunachiwa W, Toriyama K. 2006. Genotypes of hepatitis B virus among voluntary blood donors in northern Thailand. Hepatol Res 35:263-266.
17. Kao JH, Chen PJ, Lai MY, Chen DS. 2002. Clinical and virological aspects of blood donors infected with Hepatitis B virus genotypes B and C. J Clin Microbiol 40:22-25.
18. Kao JH. 2002. Hepatitis B viral genotypes: Clinical relevance and molecular characteristics. J Gastroenterol Hepatol 17:643-650.
19. Kato H, Orito E, Gish RG, Sugauchi F, Suzuki S, Ueda R, Miyakawa Y, Mizokami M. 2002. Characteristics of hepatitis B virus isolates of genotype G and their phylogenetic differences from the other six genotypes (A through F). J Virol 76:6131-6137.
20. Kay A, Zoulim F. 2007. Hepatitis B virus genetic variability and evolution. Virus Res 127:164-176.
21. Kidd-Ljunggren K, Miyakawa Y, Kidd AH. 2002. Genetic variability in hepatitis B viruses. J Gen Virol 83:1267-1280.
22. Koibuchi T, Hitani A, Nakamura T, Nojiri N, Nakajima K, Jyuji T, Iwamoto A. 2001. Predominance of genotype A HBV in an HBV-HIV-1 dually positive population compared with an HIV-1 negative counterpart in Japan. J Med Virol 64:435-440.
23. Kramvis A, Kew M. Relationship of genotypes of hepatitis B virus to mutations, disease progression and response to antiviral therapy. J Viral Hepat 2005. 12:456-464.
24. Kuang SY, Jackson PE, Wang JB, Lu PX, Munoz A, Qian GS, Kensler TW, Groopman JD. 2004. Specific mutations of Hepatitis B virus in plasma predict liver cancer development. Proc Natl Acad Sci USA 101:3575-3580.
25. Liaw YF, Sollano JD. 2006. Factors influencing liver disease progression in chronic hepatitis B. Liver Int 26:23-29.
26. Mandal D, Jana S, Bhattacharya SK, Chakrabarti S. 2002. HIV type 1 subtypes circulating in eastern and northeastern regions of India. AIDS Res Hum Retroviruses 18:1219-1227.
27. Marusawa H, Uemoto S, Hijikata M, Ueda Y, Tanaka K, Shimotohno K, Chiba T. 2000. Latent hepatitis B virus infection in healthy individuals with antibodies to hepatitis B core antigen. Hepatology 31:488-495.
28. Matsuura K, Tanaka Y, Hige S, Yamada G, Murawaki Y, Komatsu M, Kuramitsu T, Kawata S, Tanaka E, Izumi N, Okuse C, Kakumu S, Okanoue T, Hino K, Hiasa Y, Sata M, Maeshiro T, Sugauchi F, Nojiri S, Joh T, Miyakawa Y, Mizokami M. 2009. Distribution of Hepatitis B Virus genotypes among patients with chronic infection in Japan shifting toward an increase of genotype A. J Clin Microbiol 47:476-1483.
29. Mayerat C, Mantegani A, Frei PC. 1999. Does hepatitis B virus (HBV) genotype influence the clinical outcome of HBV infection? J Viral Hepat 6:299-304.
30. Murakami Y, Minami M, Daimon Y, Okanoue T. 2004. Hepatitis B virus DNA in liver, serum, and peripheral blood mononuclear cells after the clearance of serum hepatitis B virus surface antigen. J Med Virol 72:203-214.
31. Norder H, Courouce AM, Coursaget P, Echevarria JM, Lee SD, Mushahwar IK, Robertson BH, Locarnini S, Magnius LO. 2004. Genetic diversity of hepatitis B virus strains derived worldwide: Genotypes, subgenotypes, and HBsAg sub-types. Intervirology 47:289-309.
32. Ogawa M, Hasegawa K, Naritomi T, Torii N, Hayashi N. 2002. Clinical features and viral sequences of various genotypes of hepatitis B virus compared among patients with acute hepatitis B. Hepatol Res 23:167-177.
33. Ramesh R, Panda SK, Jameel S, Rajasambandam P. 1994. Mapping of the hepatitis B virus genome in hepatocellular carcinoma using PCR and demonstration of a potential trans-activator encoded by the frequently detected fragment. J Gen Virol 75:327-334.
34. Schaefer S. 2005. Hepatitis B virus significance of genotypes. J Viral Hepat 12:111-124.
35. Schaefer S. 2007. Hepatitis B virus taxonomy and hepatitis B virus genotypes. World J Gastroenterol 13:14-21.
36. Tanaka Y, Mizokami M. 2007. Genetic diversity of hepatitis B virus as an important factor associated with differences in clinical outcomes. J Infect Dis 195:1-4.
37. Telenta PF, Poggio GP, Lopez JL, Gonzalez J, Lemberg A, Campos RH. 1997. Increased prevalence of genotype F Hepatitis B virus isolates in Buenos Aires, Argentina. J Clin Microbiol 35:1873-1875.
38. Umeda M, Marusawa H, Seno H, Katsurada A, Nabeshima M, Egawa H, Uemoto S, Inomata Y, Tanaka K, Chiba T. 2005. Hepatitis B virus infection in lymphatic tissues in inactive hepatitis B carriers. J Hepatol 42:806-812.
39. Vieth S, Manegold C, Drosten C, Nippraschk T, Gunther S. 2002. Sequence and phylogenetic analysis of hepatitis B virus genotype G isolated in Germany. Virus Genes 24:153-156.
40. Villa E, Grottola A, Buttafoco P, Trande P, Merighi A, Fratti N, Seium Y, Cioni G, Manenti F. 1995. Evidence for hepatitis B virus infection in patients with chronic hepatitis C with and without serological markers of hepatitis B. Dig Dis Sci 40:8-13.
41. Vivekanandan P, Abraham P, Sridharan G, Chandy G, Raghuraman S, Daniel H, Subramaniam T. 2004. Distribution of Hepatitis B virus genotypes in blood donors and chronically infected patients in a tertiary care hospital in southern India. Clin Infect Dis 38:81-86.