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Volumn 12, Issue 4, 1996, Pages 363-367

Creation of genomic methylation patterns

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DEOXYRIBONUCLEOTIDE; DNA;

EID: 0030115772     PISSN: 10614036     EISSN: None     Source Type: Journal    
DOI: 10.1038/ng0496-363     Document Type: Review
Times cited : (267)

References (51)
  • 1
    • 0029068629 scopus 로고
    • The crystal structure of HaeIII methyltransferase covalently complexed to DNA: An extrahelical cytosine and rearranged base pairing
    • 1995
    • Reinisch, K. M., Chen, L., Verdine , G.L. & Lipscomb, W N. (1995) The crystal structure of HaeIII methyltransferase covalently complexed to DNA: an extrahelical cytosine and rearranged base pairing. Cell 82, 143-153 (1995).
    • (1995) Cell , vol.82 , pp. 143-153
    • Reinisch, K.M.1    Chen, L.2    Verdine, G.L.3    Lipscomb, W.N.4
  • 2
    • 0025119812 scopus 로고
    • Polymerase-chain reaction aided genomic sequencing of an X chromosome linked CpG island: Methylation patterns suggest clonal inheritance, CpG site autonomy, and an explanation of activity state stability
    • 1990
    • Pfeifer, G., Steigerwald, S., Hansen, R.S. Gartler, S M. & Riggs, A.D (1990) Polymerase-chain reaction aided genomic sequencing of an X chromosome linked CpG island: methylation patterns suggest clonal inheritance, CpG site autonomy, and an explanation of activity state stability. Proc. Natl Acad. Sci. USA 87, 8252-8256 (1990).
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 8252-8256
    • Pfeifer, G.1    Steigerwald, S.2    Hansen, R.S.3    Gartler, S.M.4    Riggs, A.D.5
  • 3
    • 0024673303 scopus 로고
    • CpG methylation of the cAMP responsive enhancer/promoter TGACGTCA abolishes specific factor binding as well as transcriptional activation
    • Iguchi-Ariga, S.M.M. & Schaffner, W CpG methylation of the cAMP responsive enhancer/promoter TGACGTCA abolishes specific factor binding as well as transcriptional activation Genes Dev. 3, 612-619 (1989).
    • (1989) Genes Dev. , vol.3 , pp. 612-619
    • Iguchi-Ariga, S.M.M.1    Schaffner, W.2
  • 4
    • 0000617895 scopus 로고
    • The pros and cons of cytosine methylation
    • Bestor, T.H & Coxon, A. The pros and cons of cytosine methylation Curr. Biol. 3, 384-386 (1993).
    • (1993) Curr. Biol. , vol.3 , pp. 384-386
    • Bestor, T.H.1    Coxon, A.2
  • 5
    • 0029114538 scopus 로고
    • Silencing of the E-cadherin invasion-suppressor gene by CpG methylation in human carcinomas
    • Yoshiura, K. et al. Silencing of the E-cadherin invasion-suppressor gene by CpG methylation in human carcinomas. Proc. Natl. Acad. Sci. USA 92, 7416-7419 (1995).
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 7416-7419
    • Yoshiura, K.1
  • 6
    • 0028072991 scopus 로고
    • Silencing of the VHL tumor-suppressor gene by DNA methylation in renal carcinoma
    • Herman, J. et al. Silencing of the VHL tumor-suppressor gene by DNA methylation in renal carcinoma Proc. Natl. Acad. Sci USA 91, 9700-9704 (1994).
    • (1994) Proc. Natl. Acad. Sci USA , vol.91 , pp. 9700-9704
    • Herman, J.1
  • 7
    • 0025716294 scopus 로고
    • DNA methylation: Evolution of a bacterial immune function into a regulator of genome structure and activity in higher eukaryotes
    • Bestor, T.H. DNA methylation: evolution of a bacterial immune function into a regulator of genome structure and activity in higher eukaryotes. Phil. Trans. Royal Soc. Lond. B 326, 179-187 (1990).
    • (1990) Phil. Trans. Royal Soc. Lond. B , vol.326 , pp. 179-187
    • Bestor, T.H.1
  • 8
    • 0026708177 scopus 로고
    • Targeted mutation of mouse DNA methyltransferase gene results in embryonic lethality
    • Li, E , Bestor, T.H. & Jaenisch, R. Targeted mutation of mouse DNA methyltransferase gene results in embryonic lethality. Cell 69, 915-926 (1992).
    • (1992) Cell , vol.69 , pp. 915-926
    • Li, E.1    Bestor, T.H.2    Jaenisch, R.3
  • 10
    • 0016439429 scopus 로고
    • DNA modification mechanisms and gene activity during development
    • Holliday, R. & Pugh, J.E. DNA modification mechanisms and gene activity during development Science 187, 226-232 (1975).
    • (1975) Science , vol.187 , pp. 226-232
    • Holliday, R.1    Pugh, J.E.2
  • 11
    • 0016692220 scopus 로고
    • X-inactivation, differentiation, and DNA methylation
    • Riggs, A.D. X-inactivation, differentiation, and DNA methylation Cytogenet. Cell Genet. 14, 9-11 (1975)
    • (1975) Cytogenet. Cell Genet. , vol.14 , pp. 9-11
    • Riggs, A.D.1
  • 13
    • 0342959172 scopus 로고
    • The biochemical basis of allele-specific gene expression in genomic imprinting and X inactivation
    • (eds Ohlsson, R., Hall, K. & Ritzen, M) Cambridge University Press, Cambridge
    • Bestor, T.H The biochemical basis of allele-specific gene expression in genomic imprinting and X inactivation. in Genomic imprinting: Causes and consequences. (eds Ohlsson, R., Hall, K. & Ritzen, M) (Cambridge University Press, Cambridge, 1995).
    • (1995) Genomic Imprinting: Causes and Consequences.
    • Bestor, T.H.1
  • 14
    • 0001408994 scopus 로고
    • Treatment of mice with 5-azacytidine efficiently activates silent retroviral genomes in different tissues
    • Jaenisch, R., Schnieke, A. & Harbers, K. Treatment of mice with 5-azacytidine efficiently activates silent retroviral genomes in different tissues. Proc. Natl. Acad. Sci. USA 82, 1451-1455 (1985).
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 1451-1455
    • Jaenisch, R.1    Schnieke, A.2    Harbers, K.3
  • 15
    • 0003455528 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
    • Ashburner, M. Drosophila: A Laboratory Handbook. 303 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 1992).
    • (1992) Drosophila: A Laboratory Handbook , pp. 303
    • Ashburner, M.1
  • 16
    • 0027525976 scopus 로고
    • A cis-acting element accounts for a conserved methylation pattern upstream of the mouse adenine phosphoribosyltransferase gene
    • Mummaneni, P., Bishop, P. & Turker, M. A cis-acting element accounts for a conserved methylation pattern upstream of the mouse adenine phosphoribosyltransferase gene. J. Biol. Chem. 268, 552-558 (1993).
    • (1993) J. Biol. Chem. , vol.268 , pp. 552-558
    • Mummaneni, P.1    Bishop, P.2    Turker, M.3
  • 17
    • 0027960055 scopus 로고
    • Sp1 binding sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island
    • Macleod, D , Charlton, J., Mullins, J. & Bird, A. Sp1 binding sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island. Genes Dev. 8, 2282-2292 (1994)
    • (1994) Genes Dev. , vol.8 , pp. 2282-2292
    • Macleod, D.1    Charlton, J.2    Mullins, J.3    Bird, A.4
  • 18
    • 0028104109 scopus 로고
    • Sp1 elements protect a CpG island from de novo methylation
    • Brandeis, M. et al. Sp1 elements protect a CpG island from de novo methylation. Nature 371, 435-438 (1994)
    • (1994) Nature , vol.371 , pp. 435-438
    • Brandeis, M.1
  • 19
    • 0028886688 scopus 로고
    • Unity in transposition reactions
    • Craig, N.L Unity in transposition reactions. Science 270, 253-255 (1995).
    • (1995) Science , vol.270 , pp. 253-255
    • Craig, N.L.1
  • 20
    • 0028108183 scopus 로고
    • The evolutionary dynamics of repetitive DNA in eukaryotes
    • Charlesworth, B , Sniegowski, P. & Stephan, W. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371, 215-220 (1994).
    • (1994) Nature , vol.371 , pp. 215-220
    • Charlesworth, B.1    Sniegowski, P.2    Stephan, W.3
  • 21
    • 0023650885 scopus 로고
    • Supercoiling-dependent sequence specificity of mammalian DNA methyltransferase
    • Bestor, T.H. Supercoiling-dependent sequence specificity of mammalian DNA methyltransferase. Nucl. Acids Res. 15, 3835-3843 (1987)
    • (1987) Nucl. Acids Res. , vol.15 , pp. 3835-3843
    • Bestor, T.H.1
  • 22
    • 0029008288 scopus 로고
    • Hairpins are formed by the single DNA strands of the fragile X triplet repeats: Structure and biological implications
    • Chen, X et al. Hairpins are formed by the single DNA strands of the fragile X triplet repeats: structure and biological implications. Proc. Natl. Acad. Sci. USA 92, 5199-5203 (1995).
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 5199-5203
    • Chen, X.1
  • 23
    • 0022599857 scopus 로고
    • Endonuclease VII resolves Y-junctions in branched DNA in vitro
    • Jentsch, F. & Kemper, B. Endonuclease VII resolves Y-junctions in branched DNA in vitro. EMBO J. 5, 181-190 (1986).
    • (1986) EMBO J. , vol.5 , pp. 181-190
    • Jentsch, F.1    Kemper, B.2
  • 24
    • 0025850530 scopus 로고
    • Resolution of branched DNA substrates by T7 endonuclease I and its inhibition
    • Lu, M , Guo, Q , Studier, W.F. & Kallenbach, N F. Resolution of branched DNA substrates by T7 endonuclease I and its inhibition. J Biol. Chem. 266, 2531-2536 (1991).
    • (1991) J Biol. Chem. , vol.266 , pp. 2531-2536
    • Lu, M.1    Guo, Q.2    Studier, W.F.3    Kallenbach, N.F.4
  • 25
    • 0028874391 scopus 로고
    • CGG repeats associated with DNA instability and chromosome fragility form structures that block DNA synthesis in vitro
    • Usdin, K. & Woodford, K.J. CGG repeats associated with DNA instability and chromosome fragility form structures that block DNA synthesis in vitro. Nucl. Acids Res. 23, 4202-4209 (1995).
    • (1995) Nucl. Acids Res. , vol.23 , pp. 4202-4209
    • Usdin, K.1    Woodford, K.J.2
  • 26
    • 0025641736 scopus 로고
    • Premeiotic instability of repeated sequences in Neurospora crassa
    • Selker, E.U. Premeiotic instability of repeated sequences in Neurospora crassa. Annu Rev. Genet. 24, 579-613. (1990).
    • (1990) Annu Rev. Genet. , vol.24 , pp. 579-613
    • Selker, E.U.1
  • 27
    • 0027993781 scopus 로고
    • Perpetuation of cytosine methylation in Ascobolus immersus implies a novel type of maintenance methylase
    • Goyon, C., Nogueira, T.I.V. & Faugeron, G. Perpetuation of cytosine methylation in Ascobolus immersus implies a novel type of maintenance methylase. J. Mol. Biol. 240, 42-51 (1994).
    • (1994) J. Mol. Biol. , vol.240 , pp. 42-51
    • Goyon, C.1    Nogueira, T.I.V.2    Faugeron, G.3
  • 28
    • 0028891102 scopus 로고
    • Homology-dependent gene silencing in transgenic plants: What does it really tell us?
    • Matzke, MA & Matzke, A.J.M. Homology-dependent gene silencing in transgenic plants: what does it really tell us? Trends Genet. 11, 1-3 (1995).
    • (1995) Trends Genet. , vol.11 , pp. 1-3
    • Matzke, M.A.1    Matzke, A.J.M.2
  • 29
    • 0027984781 scopus 로고
    • Homology-dependent gene silencing in transgenic plants: Epistatic silencing loci contain multiple copies of methylated transgenes
    • Matzke, A.J M., Neuhuber, F., Park, Y.D , Ambros, P.F & Matzke, M.A Homology-dependent gene silencing in transgenic plants: epistatic silencing loci contain multiple copies of methylated transgenes Mol. Gen. Genet. 244, 219-229 (1994).
    • (1994) Mol. Gen. Genet. , vol.244 , pp. 219-229
    • Matzke, A.J.M.1    Neuhuber, F.2    Park, Y.D.3    Ambros, P.F.4    Matzke, M.A.5
  • 30
    • 0028213910 scopus 로고
    • Inactivation of gene expression in plants as a consequence of specific sequence duplication
    • Flavell, R.B. Inactivation of gene expression in plants as a consequence of specific sequence duplication. Proc. Natl. Acad. Sci. USA 91, 3490-3496 (1994).
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 3490-3496
    • Flavell, R.B.1
  • 31
    • 0028107795 scopus 로고
    • Transgene inactivation: Plants fight back!
    • Finnegan, J. & McElroy, D. Transgene inactivation: plants fight back! Biotechnol. 12, 883-888. (1994)
    • (1994) Biotechnol. , vol.12 , pp. 883-888
    • Finnegan, J.1    McElroy, D.2
  • 32
    • 0027661013 scopus 로고
    • Epigenetic repeat-induced gene silencing (RIGS) in Arabidopsis
    • Assaad, F.F , Tucker, K L & Signer, E R. Epigenetic repeat-induced gene silencing (RIGS) in Arabidopsis. Plant Mol Biol 22, 1067-1085 (1993).
    • (1993) Plant Mol Biol , vol.22 , pp. 1067-1085
    • Assaad, F.F.1    Tucker, K.L.2    Signer, E.R.3
  • 33
    • 0028226742 scopus 로고
    • Long-range cis preference in DNA homology search over the length of the Drosophila chromosome
    • Engels, W.R., Preston, C.R. & Johnson-Schlitz, D.M Long-range cis preference in DNA homology search over the length of the Drosophila chromosome. Science 263, 1623-1625 (1994).
    • (1994) Science , vol.263 , pp. 1623-1625
    • Engels, W.R.1    Preston, C.R.2    Johnson-Schlitz, D.M.3
  • 34
    • 0028885673 scopus 로고    scopus 로고
    • Epigenetic control of endogenous gene family is revealed by a novel blue fluorescent mutant of Arabidopsis
    • Bender, J. & Fink, G. Epigenetic control of endogenous gene family is revealed by a novel blue fluorescent mutant of Arabidopsis. Cell 83, 725-734 (1996)
    • (1996) Cell , vol.83 , pp. 725-734
    • Bender, J.1    Fink, G.2
  • 35
    • 0026575429 scopus 로고
    • Duplication-targeted DNA methytation and mutagenesis in the evolution of eukaryotic chromosomes
    • Kricker, M C., Drake, J.W. & Radman, M Duplication-targeted DNA methytation and mutagenesis in the evolution of eukaryotic chromosomes. Proc. Natl. Acad. Sci. USA 89, 1075-1079 (1992)
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 1075-1079
    • Kricker, M.C.1    Drake, J.W.2    Radman, M.3
  • 36
    • 0029150196 scopus 로고
    • Specific Alu binding protein from human sperm chromatin prevents DNA methylation
    • Chesnokov, I.N. & Schmid, C.W Specific Alu binding protein from human sperm chromatin prevents DNA methylation. J. Biol Chem. 270, 18539-18542 (1995)
    • (1995) J. Biol Chem. , vol.270 , pp. 18539-18542
    • Chesnokov, I.N.1    Schmid, C.W.2
  • 37
    • 0028575909 scopus 로고
    • Alu repeated DNAs are differentially methylated in primate germ cells
    • Rubin, C.M., VandeVoort, C.A., Tiplitz, R.L. & Schmid, C.W. Alu repeated DNAs are differentially methylated in primate germ cells. Nucl Acids Res. 22, 5121-5127 (1994).
    • (1994) Nucl Acids Res. , vol.22 , pp. 5121-5127
    • Rubin, C.M.1    Vandevoort, C.A.2    Tiplitz, R.L.3    Schmid, C.W.4
  • 38
    • 0028230779 scopus 로고
    • Lack of expression from a retroviral vector after transduction of murine hematopoietic stem cells is associated with methylation in vivo
    • Challita, P-A & Kahn, D.B. Lack of expression from a retroviral vector after transduction of murine hematopoietic stem cells is associated with methylation in vivo. Proc. Natl. Acad. Sci. USA 91, 2567-2571 (1994).
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 2567-2571
    • Challita, P.-A.1    Kahn, D.B.2
  • 40
    • 0028980026 scopus 로고
    • Genomic imprinting of p57KIP2, a cyclin-dependent kinase inhibitor in mouse
    • Hatada, I. & Mukai, T. Genomic imprinting of p57KIP2, a cyclin-dependent kinase inhibitor in mouse Nature Genet. 11, 204-206 (1995).
    • (1995) Nature Genet. , vol.11 , pp. 204-206
    • Hatada, I.1    Mukai, T.2
  • 41
    • 0027280881 scopus 로고
    • Methylation and imprinting: From host defense to gene regulation?
    • Barlow, DP. Methylation and imprinting: from host defense to gene regulation? Science 260, 309-310 (1993).
    • (1993) Science , vol.260 , pp. 309-310
    • Barlow, D.P.1
  • 42
    • 0028245837 scopus 로고
    • rapy) is correlated with methylation state and is influenced by parental lineage
    • rapy) is correlated with methylation state and is influenced by parental lineage. Genes Dev. 8, 1463-1472 (1994).
    • (1994) Genes Dev. , vol.8 , pp. 1463-1472
    • Michaud, E.1
  • 44
    • 0028227938 scopus 로고
    • Epigenetic lesions at the H19 locus in Wilms' tumour patients
    • Moulton, T et al. Epigenetic lesions at the H19 locus in Wilms' tumour patients. Nature Genet. 7, 440-447 (1994).
    • (1994) Nature Genet. , vol.7 , pp. 440-447
    • Moulton, T.1
  • 45
    • 0028939902 scopus 로고
    • Inherited microdeletions in the Angelman and Prader-Willi syndromes define an imprinting centre on human chromosome 15
    • Burting, K. et al. Inherited microdeletions in the Angelman and Prader-Willi syndromes define an imprinting centre on human chromosome 15 Nature Genet. 9, 395-400 (1995).
    • (1995) Nature Genet. , vol.9 , pp. 395-400
    • Burting, K.1
  • 46
    • 0029050606 scopus 로고
    • A HhaI and HpaII DNA methyltransferases bind DNA mismatches, methylate uracil and block DNA repair
    • Yang, A S., Shen, J.-C , Zingg, J.-M , Mi, S & Jones, P.A HhaI and HpaII DNA methyltransferases bind DNA mismatches, methylate uracil and block DNA repair. Nucl Acids Res. 23, 1380-1387 (1995).
    • (1995) Nucl Acids Res. , vol.23 , pp. 1380-1387
    • Yang, A.S.1    Shen, J.-C.2    Zingg, J.-M.3    Mi, S.4    Jones, P.5
  • 47
    • 0028990179 scopus 로고
    • M.HhaI binds lightly to substrates containing mismatches at the target base
    • Klimasuaskas, S. & Roberts, R.J., M.HhaI binds lightly to substrates containing mismatches at the target base. Nucl. Acids Res. 23, 1388-1395 (1995).
    • (1995) Nucl. Acids Res. , vol.23 , pp. 1388-1395
    • Klimasuaskas, S.1    Roberts, R.J.2
  • 48
    • 0029129302 scopus 로고
    • Regulated synthesis and localization of DNA methyltransferase during spermatogenesis
    • Jue, K., Bestor, T H. & Trasler, J. Regulated synthesis and localization of DNA methyltransferase during spermatogenesis. Biol. Reprod. 53, 561-569 (1995)
    • (1995) Biol. Reprod. , vol.53 , pp. 561-569
    • Jue, K.1    Bestor, T.H.2    Trasler, J.3
  • 49
    • 0028940587 scopus 로고
    • Gene number, noise reduction and biological complexity
    • Bird, A P. Gene number, noise reduction and biological complexity. Trends Genet. 11, 94-100 (1995).
    • (1995) Trends Genet. , vol.11 , pp. 94-100
    • Bird, A.P.1
  • 50
    • 0027977269 scopus 로고
    • It was a very good year for DNA repair
    • Cleaver, J. It was a very good year for DNA repair Cell 76, 1-4 (1994)
    • (1994) Cell , vol.76 , pp. 1-4
    • Cleaver, J.1
  • 51
    • 0021318163 scopus 로고
    • Origins of replication and gene regulation
    • Taylor, J.H. Origins of replication and gene regulation. Mol. Cell. Biochem. 61, 99-109 (1984).
    • (1984) Mol. Cell. Biochem. , vol.61 , pp. 99-109
    • Taylor, J.H.1


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