-
1
-
-
77955635233
-
Cancer statistics, 2010
-
10.3322/caac.20073, 20610543
-
Jemal A, Siegel R, Xu J, Ward E. Cancer statistics, 2010. CA Cancer J Clin 2010, 60(5):277-300. 10.3322/caac.20073, 20610543.
-
(2010)
CA Cancer J Clin
, vol.60
, Issue.5
, pp. 277-300
-
-
Jemal, A.1
Siegel, R.2
Xu, J.3
Ward, E.4
-
2
-
-
0033518234
-
From molecular to modular cell biology
-
10.1038/46972, 10573417
-
Hartwell LH, Hopfield JJ, Leibler S, Murray AW. From molecular to modular cell biology. Nature 1999, 402:47-52. 10.1038/46972, 10573417.
-
(1999)
Nature
, vol.402
, pp. 47-52
-
-
Hartwell, L.H.1
Hopfield, J.J.2
Leibler, S.3
Murray, A.W.4
-
3
-
-
67049098922
-
Hypergraphs and cellular networks
-
10.1371/journal.pcbi.1000385, 2673028, 19478865
-
Klamt S, Haus U, Theis F. Hypergraphs and cellular networks. PLoS Comput Biol 2009, 5(5):e1000385. 10.1371/journal.pcbi.1000385, 2673028, 19478865.
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.5
-
-
Klamt, S.1
Haus, U.2
Theis, F.3
-
4
-
-
77449157504
-
MicroRNAs and prostate cancer
-
10.1677/ERC-09-0172, 19779034
-
Coppola V, Maria RD, Bonci D. MicroRNAs and prostate cancer. Endocr Relat Cancer 2010, 17:F1-F17. 10.1677/ERC-09-0172, 19779034.
-
(2010)
Endocr Relat Cancer
, vol.17
-
-
Coppola, V.1
Maria, R.D.2
Bonci, D.3
-
5
-
-
77953010951
-
MicroRNAs and prostate cancer
-
10.1093/abbs/gmq038, 20539944
-
Pang Y, Young CY, Yuan H. MicroRNAs and prostate cancer. Acta Biochim Biophys Sin 2010, 42:363-69. 10.1093/abbs/gmq038, 20539944.
-
(2010)
Acta Biochim Biophys Sin
, vol.42
, pp. 363-369
-
-
Pang, Y.1
Young, C.Y.2
Yuan, H.3
-
6
-
-
84869220331
-
MicroRNAs in prostate cancer: from biomarkers to molecularly-based therapeutics
-
10.1038/pcan.2012.3, 22333688
-
Gordanpour A, Nam RK, Sugar L, Seth A. MicroRNAs in prostate cancer: from biomarkers to molecularly-based therapeutics. Prostate Cancer Prostatic Dis 2012, 15:314-319. 10.1038/pcan.2012.3, 22333688.
-
(2012)
Prostate Cancer Prostatic Dis
, vol.15
, pp. 314-319
-
-
Gordanpour, A.1
Nam, R.K.2
Sugar, L.3
Seth, A.4
-
7
-
-
80053584635
-
MicroRNAs associated with metastatic prostate cancer
-
10.1371/journal.pone.0024950, 3184096, 21980368
-
Watahiki A, Wang Y, Morris J, Dennis K, O'Dwyer HM, Gleave M, Gout PW, Wang Y. MicroRNAs associated with metastatic prostate cancer. PLoS One 2011, 6(9):e24950. 10.1371/journal.pone.0024950, 3184096, 21980368.
-
(2011)
PLoS One
, vol.6
, Issue.9
-
-
Watahiki, A.1
Wang, Y.2
Morris, J.3
Dennis, K.4
O'Dwyer, H.M.5
Gleave, M.6
Gout, P.W.7
Wang, Y.8
-
8
-
-
74049163692
-
Diagnostic and prognostic implications of microRNA profiling in prostate carcinoma
-
Schaefer A, Jung M, Mollenkopf HJ, Wagner I, Stephan C, Jentzmik F, Miller K, Lein M, Kristiansen G, Jung K. Diagnostic and prognostic implications of microRNA profiling in prostate carcinoma. Int J Cancer 2010, 126:1166-1176.
-
(2010)
Int J Cancer
, vol.126
, pp. 1166-1176
-
-
Schaefer, A.1
Jung, M.2
Mollenkopf, H.J.3
Wagner, I.4
Stephan, C.5
Jentzmik, F.6
Miller, K.7
Lein, M.8
Kristiansen, G.9
Jung, K.10
-
9
-
-
32044451325
-
Cancer: a systems biology disease
-
10.1016/j.biosystems.2005.05.014, 16426740
-
Hornberg JJ, Bruggeman FJ, Westerhoff HV, Lankelma J. Cancer: a systems biology disease. Biosystems 2006, 83:81-90. 10.1016/j.biosystems.2005.05.014, 16426740.
-
(2006)
Biosystems
, vol.83
, pp. 81-90
-
-
Hornberg, J.J.1
Bruggeman, F.J.2
Westerhoff, H.V.3
Lankelma, J.4
-
10
-
-
34447625052
-
Cancer systems biology: exploring cancer-associated genes on cellular networks
-
10.1007/s00018-007-7054-6, 17415519
-
Wang E, Lenferink A, O'Connor-McCourt M. Cancer systems biology: exploring cancer-associated genes on cellular networks. Cell Mol Life Sci 2007, 64(14):1752-1762. 10.1007/s00018-007-7054-6, 17415519.
-
(2007)
Cell Mol Life Sci
, vol.64
, Issue.14
, pp. 1752-1762
-
-
Wang, E.1
Lenferink, A.2
O'Connor-McCourt, M.3
-
11
-
-
84863338129
-
Network-based analysis of complex diseases
-
10.1049/iet-syb.2010.0052, 22360268
-
Liu ZP, Wang Y, Zhang XS, Chen L. Network-based analysis of complex diseases. IET Syst Biol 2012, 6(1):22-33. 10.1049/iet-syb.2010.0052, 22360268.
-
(2012)
IET Syst Biol
, vol.6
, Issue.1
, pp. 22-33
-
-
Liu, Z.P.1
Wang, Y.2
Zhang, X.S.3
Chen, L.4
-
12
-
-
0037941585
-
Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
-
10.1038/ng1165, 12740579
-
Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, Friedman N. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Nat Genet 2003, 34(2):166-76. 10.1038/ng1165, 12740579.
-
(2003)
Nat Genet
, vol.34
, Issue.2
, pp. 166-176
-
-
Segal, E.1
Shapira, M.2
Regev, A.3
Pe'er, D.4
Botstein, D.5
Koller, D.6
Friedman, N.7
-
13
-
-
10744226222
-
Computational discovery of gene modules and regulatory networks
-
10.1038/nbt890, 14555958
-
Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK. Computational discovery of gene modules and regulatory networks. Nat Biotechnol 2003, 21(11):1337-42. 10.1038/nbt890, 14555958.
-
(2003)
Nat Biotechnol
, vol.21
, Issue.11
, pp. 1337-1342
-
-
Bar-Joseph, Z.1
Gerber, G.K.2
Lee, T.I.3
Rinaldi, N.J.4
Yoo, J.Y.5
Robert, F.6
Gordon, D.B.7
Fraenkel, E.8
Jaakkola, T.S.9
Young, R.A.10
Gifford, D.K.11
-
14
-
-
67449095889
-
Computational methods for discovering gene networks from expression data
-
Lee WP, Tzou WS. Computational methods for discovering gene networks from expression data. Brief Bioinform 2009, 10(4):408-423.
-
(2009)
Brief Bioinform
, vol.10
, Issue.4
, pp. 408-423
-
-
Lee, W.P.1
Tzou, W.S.2
-
16
-
-
77953358008
-
Development of the human cancer microRNA network
-
10.1186/1758-907X-1-6, 2835996, 20226080
-
Bandyopadhyay S, Mitra R, Maulik U, Zhang MQ. Development of the human cancer microRNA network. Silence 2010, 1(1):6. 10.1186/1758-907X-1-6, 2835996, 20226080.
-
(2010)
Silence
, vol.1
, Issue.1
, pp. 6
-
-
Bandyopadhyay, S.1
Mitra, R.2
Maulik, U.3
Zhang, M.Q.4
-
17
-
-
77951841445
-
Reprogramming of miRNA networks in cancer and leukemia
-
10.1101/gr.098046.109, 2860161, 20439436
-
Volinia S, Galasso M, Costinean S, Tagliavini L, Gamberoni G, Drusco A, Marchesini J, Mascellani N, Sana ME, Jarour RA, Desponts C, Teitell M, Baffa R, Aqeilan R, Iorio V, Taccioli C, Garzon R, Leva GD, Fabbri M, Catozzi M, Previati M, Ambs S, Palumbo T, Garofalo M, Veronese A, Bottoni A, Gasparini P, Harris C, Visone R, Pekarsky P, Chapelle A, Bloomston M, Dillhoff M, Rassenti LZ, Kipps TJ, Huebner K, Pichiorri F, Lenze D, Cairo S, Buendia M, Pineau P, Dejean A, Zanesi N, Rossi S, Calin GA, Liu C, Palatini J, Negrini M, Vecchione A, Rosenberg A, Croce CM. Reprogramming of miRNA networks in cancer and leukemia. Genome Res 2010, 20:589-599. 10.1101/gr.098046.109, 2860161, 20439436.
-
(2010)
Genome Res
, vol.20
, pp. 589-599
-
-
Volinia, S.1
Galasso, M.2
Costinean, S.3
Tagliavini, L.4
Gamberoni, G.5
Drusco, A.6
Marchesini, J.7
Mascellani, N.8
Sana, M.E.9
Jarour, R.A.10
Desponts, C.11
Teitell, M.12
Baffa, R.13
Aqeilan, R.14
Iorio, V.15
Taccioli, C.16
Garzon, R.17
Leva, G.D.18
Fabbri, M.19
Catozzi, M.20
Previati, M.21
Ambs, S.22
Palumbo, T.23
Garofalo, M.24
Veronese, A.25
Bottoni, A.26
Gasparini, P.27
Harris, C.28
Visone, R.29
Pekarsky, P.30
Chapelle, A.31
Bloomston, M.32
Dillhoff, M.33
Rassenti, L.Z.34
Kipps, T.J.35
Huebner, K.36
Pichiorri, F.37
Lenze, D.38
Cairo, S.39
Buendia, M.40
Pineau, P.41
Dejean, A.42
Zanesi, N.43
Rossi, S.44
Calin, G.A.45
Liu, C.46
Palatini, J.47
Negrini, M.48
Vecchione, A.49
Rosenberg, A.50
Croce, C.M.51
more..
-
18
-
-
79958851546
-
Comprehensive analysis of human microRNA target networks
-
10.1186/1756-0381-4-17, 3130707, 21682903
-
Satoh J, Tabunoki H. Comprehensive analysis of human microRNA target networks. BioData Mining 2011, 4:17. 10.1186/1756-0381-4-17, 3130707, 21682903.
-
(2011)
BioData Mining
, vol.4
, pp. 17
-
-
Satoh, J.1
Tabunoki, H.2
-
21
-
-
27544458484
-
Prediction of regulatory modules comprising microRNAs and target genes
-
Yoon S, De Micheli G. Prediction of regulatory modules comprising microRNAs and target genes. Bioinformatics 2005, 21(Suppl. 2):ii93-100.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Yoon, S.1
De Micheli, G.2
-
23
-
-
34249849395
-
Discovery of microRNA-mRNA modules via population-based probabilistic learning
-
10.1093/bioinformatics/btm045, 17350973
-
Joung JG, Hwang KB, Nam JW, Kim SJ, Zhang BT. Discovery of microRNA-mRNA modules via population-based probabilistic learning. Bioinformatics 2007, 23(9):1141-1147. 10.1093/bioinformatics/btm045, 17350973.
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1141-1147
-
-
Joung, J.G.1
Hwang, K.B.2
Nam, J.W.3
Kim, S.J.4
Zhang, B.T.5
-
24
-
-
59549088112
-
Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model
-
10.1093/bioinformatics/btn626, 19056778
-
Joung JG, Fei Z. Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model. Bioinformatics 2009, 25(3):387-393. 10.1093/bioinformatics/btn626, 19056778.
-
(2009)
Bioinformatics
, vol.25
, Issue.3
, pp. 387-393
-
-
Joung, J.G.1
Fei, Z.2
-
25
-
-
73249118535
-
Exploring complex miRNA-mRNA interactions with Bayesian networks by splitting-averaging strategy
-
10.1186/1471-2105-10-408, 2797807, 20003267
-
Liu B, Li J, Tsykin A, Liu L, Gaur AB, Goodall GJ. Exploring complex miRNA-mRNA interactions with Bayesian networks by splitting-averaging strategy. BMC Bioinformatics 2009, 10(1):408. 10.1186/1471-2105-10-408, 2797807, 20003267.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.1
, pp. 408
-
-
Liu, B.1
Li, J.2
Tsykin, A.3
Liu, L.4
Gaur, A.B.5
Goodall, G.J.6
-
26
-
-
77956496359
-
Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data
-
Bonnet E, Michoel T, Van de Peer Y. Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data. Bioinformatics 2010, 26(18):638-644.
-
(2010)
Bioinformatics
, vol.26
, Issue.18
, pp. 638-644
-
-
Bonnet, E.1
Michoel, T.2
Van de Peer, Y.3
-
27
-
-
77956308091
-
Module network inference from a cancer gene expression data set identifies microRNA regulated modules
-
10.1371/journal.pone.0010162, 2854686, 20418949
-
Bonnet E, Tatari M, Joshi A, Michoel T, Marchal K, Berx G, Van de Peer Y. Module network inference from a cancer gene expression data set identifies microRNA regulated modules. PLoS One 2010, 5(4):e10162. 10.1371/journal.pone.0010162, 2854686, 20418949.
-
(2010)
PLoS One
, vol.5
, Issue.4
-
-
Bonnet, E.1
Tatari, M.2
Joshi, A.3
Michoel, T.4
Marchal, K.5
Berx, G.6
Van de Peer, Y.7
-
28
-
-
79951751828
-
Identifying functional miRNA-mRNA regulatory modules with correspondence latent Dirichlet allocation
-
10.1093/bioinformatics/btq576, 2995118, 20956247
-
Liu B, Liu L, Tsykin A, Goodall GJ, Green JE, Zhu M, Kim CH, Li J. Identifying functional miRNA-mRNA regulatory modules with correspondence latent Dirichlet allocation. Bioinformatics 2010, 26(24):3105-3111. 10.1093/bioinformatics/btq576, 2995118, 20956247.
-
(2010)
Bioinformatics
, vol.26
, Issue.24
, pp. 3105-3111
-
-
Liu, B.1
Liu, L.2
Tsykin, A.3
Goodall, G.J.4
Green, J.E.5
Zhu, M.6
Kim, C.H.7
Li, J.8
-
29
-
-
57649228450
-
Finding microRNA regulatory modules in human genome using rule induction
-
2638145, 19091028
-
Tran D, Satou K, Ho T. Finding microRNA regulatory modules in human genome using rule induction. BMC Bioinformatics 2008, 9(Suppl. 12):S5. 2638145, 19091028.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 12
-
-
Tran, D.1
Satou, K.2
Ho, T.3
-
30
-
-
67649382719
-
Discovery of functional miRNA-mRNA regulatory modules with computational methods
-
10.1016/j.jbi.2009.01.005, 19535005
-
Liu B, Li J, Tsykin A. Discovery of functional miRNA-mRNA regulatory modules with computational methods. J Biomed Inform 2009, 42(4):685-691. 10.1016/j.jbi.2009.01.005, 19535005.
-
(2009)
J Biomed Inform
, vol.42
, Issue.4
, pp. 685-691
-
-
Liu, B.1
Li, J.2
Tsykin, A.3
-
31
-
-
79959448071
-
A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules
-
10.1093/bioinformatics/btr206, 3117336, 21685098
-
Zhang S, Li Q, Liu J, Zhou XJ. A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules. Bioinformatics 2011, 27(13):i401-409. 10.1093/bioinformatics/btr206, 3117336, 21685098.
-
(2011)
Bioinformatics
, vol.27
, Issue.13
-
-
Zhang, S.1
Li, Q.2
Liu, J.3
Zhou, X.J.4
-
32
-
-
69549124090
-
Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers
-
10.1186/1471-2164-10-373, 2907698, 19671175
-
Peng X, Li Y, Walters KA, Rosenzweig ER, Lederer SL, Aicher LD, Proll S, Katze MG. Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers. BMC Genomics 2009, 10(1):373. 10.1186/1471-2164-10-373, 2907698, 19671175.
-
(2009)
BMC Genomics
, vol.10
, Issue.1
, pp. 373
-
-
Peng, X.1
Li, Y.2
Walters, K.A.3
Rosenzweig, E.R.4
Lederer, S.L.5
Aicher, L.D.6
Proll, S.7
Katze, M.G.8
-
33
-
-
77953312769
-
Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation
-
10.1371/journal.pone.0008898, 2813862, 20126538
-
Nunez-Iglesias J, Liu CC, Morgan TE, Finch CE, Zhou XJ. Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation. PLoS One 2010, 5(2):e8898. 10.1371/journal.pone.0008898, 2813862, 20126538.
-
(2010)
PLoS One
, vol.5
, Issue.2
-
-
Nunez-Iglesias, J.1
Liu, C.C.2
Morgan, T.E.3
Finch, C.E.4
Zhou, X.J.5
-
34
-
-
80051931399
-
A Lasso regression model for the construction of microRNA-target regulatory networks
-
10.1093/bioinformatics/btr410, 21743061
-
Lu Y, Zhou Y, Qu W, Deng M, Zhang C. A Lasso regression model for the construction of microRNA-target regulatory networks. Bioinformatics 2011, 27(17):2406-2413. 10.1093/bioinformatics/btr410, 21743061.
-
(2011)
Bioinformatics
, vol.27
, Issue.17
, pp. 2406-2413
-
-
Lu, Y.1
Zhou, Y.2
Qu, W.3
Deng, M.4
Zhang, C.5
-
35
-
-
84863095465
-
MiRNA-mRNA correlation-network modules human prostate cancer and the differences between primary and metastatic tumor subtypes
-
10.1371/journal.pone.0040130, 3387006, 22768240
-
Zhang W, Edwards A, Fan W, Flemington EK, Zhang K. MiRNA-mRNA correlation-network modules human prostate cancer and the differences between primary and metastatic tumor subtypes. PLoS One 2012, 7(6):e40130. 10.1371/journal.pone.0040130, 3387006, 22768240.
-
(2012)
PLoS One
, vol.7
, Issue.6
-
-
Zhang, W.1
Edwards, A.2
Fan, W.3
Flemington, E.K.4
Zhang, K.5
-
36
-
-
77954255681
-
Integrative genomic profiling of human prostate cancer
-
10.1016/j.ccr.2010.05.026, 3198787, 20579941
-
Taylor BS, Schultz N, Hieronymus H, Gopalan A, Xiao Y, Carver BS, Arora VK, Kaushik P, Cerami E, Reva B, Antipin Y, Mitsiades N, Landers T, Dolgalev I, Major JE, Wilson M, Socci ND, Lash AE, Heguy A, Eastham JA, Scher HI, Reuter VE, Scardino PT, Sander C, Sawyers CL, Gerald WL. Integrative genomic profiling of human prostate cancer. Cancer Cell 2010, 18:11-22. 10.1016/j.ccr.2010.05.026, 3198787, 20579941.
-
(2010)
Cancer Cell
, vol.18
, pp. 11-22
-
-
Taylor, B.S.1
Schultz, N.2
Hieronymus, H.3
Gopalan, A.4
Xiao, Y.5
Carver, B.S.6
Arora, V.K.7
Kaushik, P.8
Cerami, E.9
Reva, B.10
Antipin, Y.11
Mitsiades, N.12
Landers, T.13
Dolgalev, I.14
Major, J.E.15
Wilson, M.16
Socci, N.D.17
Lash, A.E.18
Heguy, A.19
Eastham, J.A.20
Scher, H.I.21
Reuter, V.E.22
Scardino, P.T.23
Sander, C.24
Sawyers, C.L.25
Gerald, W.L.26
more..
-
37
-
-
76749092270
-
The WEKA data mining software: an update
-
Hall M, Frank E, Holmes G, Pfahringer B, Reutemann P, Witten IH. The WEKA data mining software: an update. SIGKDD Explor 2009, 11(1):10-18.
-
(2009)
SIGKDD Explor
, vol.11
, Issue.1
, pp. 10-18
-
-
Hall, M.1
Frank, E.2
Holmes, G.3
Pfahringer, B.4
Reutemann, P.5
Witten, I.H.6
-
38
-
-
79551587720
-
Cytoscape 2.8: new features for data integration and network visualization
-
10.1093/bioinformatics/btq675, 3031041, 21149340
-
Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 2011, 27(3):431-432. 10.1093/bioinformatics/btq675, 3031041, 21149340.
-
(2011)
Bioinformatics
, vol.27
, Issue.3
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
39
-
-
58149179989
-
MiR2Disease: a manually curated database for microRNA deregulation in human disease
-
10.1093/nar/gkn714, 2686559, 18927107
-
Jiang Q, Wang Y, Hao Y, Juan L, Teng M, Zhang X, Li M, Wang G, Liu Y. miR2Disease: a manually curated database for microRNA deregulation in human disease. Nucleic Acids Res 2009, 37:D98-104. 10.1093/nar/gkn714, 2686559, 18927107.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Jiang, Q.1
Wang, Y.2
Hao, Y.3
Juan, L.4
Teng, M.5
Zhang, X.6
Li, M.7
Wang, G.8
Liu, Y.9
-
40
-
-
33846115005
-
CancerGenes: a gene selection resource for cancer genome projects
-
1781153, 17088289
-
Higgins ME, Claremont M, Major JE, Sander C, Lash AE. CancerGenes: a gene selection resource for cancer genome projects. Nucleic Acids Res 2007, 35(Database issue):D721-D726. 1781153, 17088289.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.DATABASE ISSUE
-
-
Higgins, M.E.1
Claremont, M.2
Major, J.E.3
Sander, C.4
Lash, A.E.5
-
41
-
-
84862198697
-
AnimalTFDB: a comprehensive animal transcription factor database
-
3245155, 22080564
-
Zhang HM, Chen H, Liu W, Liu H, Gong J, Wang H, Guo AY. AnimalTFDB: a comprehensive animal transcription factor database. Nucleic Acids Res 2012, 40(Database issue):D144-D149. 3245155, 22080564.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.DATABASE ISSUE
-
-
Zhang, H.M.1
Chen, H.2
Liu, W.3
Liu, H.4
Gong, J.5
Wang, H.6
Guo, A.Y.7
-
42
-
-
84883235875
-
MicroRNA: new players in metastatic process
-
InTech, Siregar Y
-
Triulzi T, Iorio MV, Tagliabue E, Casalini P. MicroRNA: new players in metastatic process. Oncogene and Cancer - From Bench to Clinic 2013, 391-414. InTech, Siregar Y.
-
(2013)
Oncogene and Cancer - From Bench to Clinic
, pp. 391-414
-
-
Triulzi, T.1
Iorio, M.V.2
Tagliabue, E.3
Casalini, P.4
-
43
-
-
84869072462
-
Oncogenic activation in prostate cancer progression and metastasis: molecular insights and future challenges
-
10.4103/1477-3163.93001, 3307249, 22438770
-
Dasgupta S, Srinidhi S, Vishwanatha JK. Oncogenic activation in prostate cancer progression and metastasis: molecular insights and future challenges. J Carcinog 2012, 11(1):4. 10.4103/1477-3163.93001, 3307249, 22438770.
-
(2012)
J Carcinog
, vol.11
, Issue.1
, pp. 4
-
-
Dasgupta, S.1
Srinidhi, S.2
Vishwanatha, J.K.3
-
44
-
-
77955963884
-
MirSVR predicted target site scoring method: Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
-
10.1186/gb-2010-11-8-r90, 2945792, 20799968
-
Betel D, Koppal A, Agius P, Sander C, Leslie C. mirSVR predicted target site scoring method: Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites. Genome Biol 2010, 11:R90. 10.1186/gb-2010-11-8-r90, 2945792, 20799968.
-
(2010)
Genome Biol
, vol.11
-
-
Betel, D.1
Koppal, A.2
Agius, P.3
Sander, C.4
Leslie, C.5
-
45
-
-
33645294070
-
Oncomirs: microRNAs with a role in cancer
-
Esquela-Kerscher A, Slack FJ. Oncomirs: microRNAs with a role in cancer. Nat Rev Cancer 2006, 6:259-269.
-
(2006)
Nat Rev Cancer
, vol.6
, pp. 259-269
-
-
Esquela-Kerscher, A.1
Slack, F.J.2
-
46
-
-
84856454111
-
Tumour suppressors miR-1 and miR-133a target the oncogenic function of purine nucleoside phosphorylase (PNP) in prostate cancer
-
10.1038/bjc.2011.462, 3261671, 22068816
-
Kojima S, Chiyomaru T, Kawakami K, Yoshino H, Enokida H, Nohata N, Fuse M, Ichikawa T, Naya Y, Nakagawa M, Seki N. Tumour suppressors miR-1 and miR-133a target the oncogenic function of purine nucleoside phosphorylase (PNP) in prostate cancer. Br J Cancer 2012, 106(2):405-413. 10.1038/bjc.2011.462, 3261671, 22068816.
-
(2012)
Br J Cancer
, vol.106
, Issue.2
, pp. 405-413
-
-
Kojima, S.1
Chiyomaru, T.2
Kawakami, K.3
Yoshino, H.4
Enokida, H.5
Nohata, N.6
Fuse, M.7
Ichikawa, T.8
Naya, Y.9
Nakagawa, M.10
Seki, N.11
-
47
-
-
79957599227
-
Identification of miRs-143 and -145 that is associated with bone metastasis of prostate cancer and involved in the regulation of EMT
-
10.1371/journal.pone.0020341, 3103579, 21647377
-
Peng X, Guo W, Liu T, Wang X, Tu X, Xiong D, Chen S, Lai Y, Du H, Chen G, Liu G, Tang Y, Huang S, Zou X. Identification of miRs-143 and -145 that is associated with bone metastasis of prostate cancer and involved in the regulation of EMT. PLoS One 2011, 6(5):e20341. 10.1371/journal.pone.0020341, 3103579, 21647377.
-
(2011)
PLoS One
, vol.6
, Issue.5
-
-
Peng, X.1
Guo, W.2
Liu, T.3
Wang, X.4
Tu, X.5
Xiong, D.6
Chen, S.7
Lai, Y.8
Du, H.9
Chen, G.10
Liu, G.11
Tang, Y.12
Huang, S.13
Zou, X.14
-
48
-
-
34548168073
-
MiR-221 and miR-222 expression affects the proliferation potential of human prostate carcinoma cell lines by targeting p27Kip1
-
10.1074/jbc.M701805200, 17569667
-
Galardi S, Mercatelli N, Giorda E, Massalini S, Frajese GV, Ciafrè SA, Farace MG. miR-221 and miR-222 expression affects the proliferation potential of human prostate carcinoma cell lines by targeting p27Kip1. J Biol Chem 2007, 282(32):23716-23724. 10.1074/jbc.M701805200, 17569667.
-
(2007)
J Biol Chem
, vol.282
, Issue.32
, pp. 23716-23724
-
-
Galardi, S.1
Mercatelli, N.2
Giorda, E.3
Massalini, S.4
Frajese, G.V.5
Ciafrè, S.A.6
Farace, M.G.7
-
49
-
-
77649251655
-
Role for DNA methylation in the regulation of miR-200c and miR-141 expression in normal and cancer cells
-
10.1371/journal.pone.0008697, 2805718, 20084174
-
Vrba L, Jensen TJ, Garbe JC, Heimark RL, Cress AE, Dickinson S, Stampfer MR, Futscher BW. Role for DNA methylation in the regulation of miR-200c and miR-141 expression in normal and cancer cells. PLoS One 2010, 5(1):e8697. 10.1371/journal.pone.0008697, 2805718, 20084174.
-
(2010)
PLoS One
, vol.5
, Issue.1
-
-
Vrba, L.1
Jensen, T.J.2
Garbe, J.C.3
Heimark, R.L.4
Cress, A.E.5
Dickinson, S.6
Stampfer, M.R.7
Futscher, B.W.8
-
50
-
-
58349101326
-
Genome-wide promoter analysis of the SOX4 transcriptional network in prostate cancer cells
-
10.1158/0008-5472.CAN-08-3415, 2629396, 19147588
-
Scharer CD, McCabe CD, Ali-Seyed M, Berger MF, Bulyk ML, Moreno CS. Genome-wide promoter analysis of the SOX4 transcriptional network in prostate cancer cells. Cancer Res 2009, 69(2):709-717. 10.1158/0008-5472.CAN-08-3415, 2629396, 19147588.
-
(2009)
Cancer Res
, vol.69
, Issue.2
, pp. 709-717
-
-
Scharer, C.D.1
McCabe, C.D.2
Ali-Seyed, M.3
Berger, M.F.4
Bulyk, M.L.5
Moreno, C.S.6
-
51
-
-
44849135184
-
STAT3 promotes metastatic progression of prostate cancer
-
10.2353/ajpath.2008.071054, 2408430, 18483213
-
Abdulghani J, Gu L, Dagvadorj A, Lutz J, Leiby B, Bonuccelli G, Lisanti MP, Zellweger T, Alanen K, Mirtti T, Visakorpi T, Bubendorf L, Nevalainen MT. STAT3 promotes metastatic progression of prostate cancer. Am J Pathol 2008, 172(6):1717-1728. 10.2353/ajpath.2008.071054, 2408430, 18483213.
-
(2008)
Am J Pathol
, vol.172
, Issue.6
, pp. 1717-1728
-
-
Abdulghani, J.1
Gu, L.2
Dagvadorj, A.3
Lutz, J.4
Leiby, B.5
Bonuccelli, G.6
Lisanti, M.P.7
Zellweger, T.8
Alanen, K.9
Mirtti, T.10
Visakorpi, T.11
Bubendorf, L.12
Nevalainen, M.T.13
-
52
-
-
77953578552
-
STAT5 promotes metastatic behavior of human prostate cancer cells in vitro and in vivo
-
10.1677/ERC-09-0328, 20233708
-
Gu L, Vogiatzi P, Puhr M, Dagvadorj A, Lutz J, Ryder A, Addya S, Fortina P, Cooper C, Leiby B, Dasgupta A, Hyslop T, Bubendorf L, Alanen K, Mirtti T, Nevalainen MT. STAT5 promotes metastatic behavior of human prostate cancer cells in vitro and in vivo. Endocr Relat Cancer 2010, 17(2):481-493. 10.1677/ERC-09-0328, 20233708.
-
(2010)
Endocr Relat Cancer
, vol.17
, Issue.2
, pp. 481-493
-
-
Gu, L.1
Vogiatzi, P.2
Puhr, M.3
Dagvadorj, A.4
Lutz, J.5
Ryder, A.6
Addya, S.7
Fortina, P.8
Cooper, C.9
Leiby, B.10
Dasgupta, A.11
Hyslop, T.12
Bubendorf, L.13
Alanen, K.14
Mirtti, T.15
Nevalainen, M.T.16
-
53
-
-
84883235146
-
STAT3 regulation of and by microRNAs in development and disease
-
Haghikia A, Hoch M, Stapel B, Hilfiker-Kleiner D. STAT3 regulation of and by microRNAs in development and disease. JAK STAT 2012, 1(3):143-105.
-
(2012)
JAK STAT
, vol.1
, Issue.3
, pp. 143-1105
-
-
Haghikia, A.1
Hoch, M.2
Stapel, B.3
Hilfiker-Kleiner, D.4
-
54
-
-
79955712117
-
MBP-1 upregulates miR-29b that represses Mcl-1, collagens, and matrix-metalloproteinase-2 in prostate cancer cells
-
10.1177/1947601910371978, 2908325,2908325, 20657750
-
Steele R, Mott JL, Ray RB. MBP-1 upregulates miR-29b that represses Mcl-1, collagens, and matrix-metalloproteinase-2 in prostate cancer cells. Genes Cancer 2010, 1(4):381-387. 10.1177/1947601910371978, 2908325,2908325, 20657750.
-
(2010)
Genes Cancer
, vol.1
, Issue.4
, pp. 381-387
-
-
Steele, R.1
Mott, J.L.2
Ray, R.B.3
-
55
-
-
79958135926
-
Molecular signatures database (MSigDB) 3.0
-
10.1093/bioinformatics/btr260, 3106198, 21546393
-
Liberzon A, Subramanian A, Pinchback R, Thorvaldsdóttir H, Tamayo P, Mesirov JP. Molecular signatures database (MSigDB) 3.0. Bioinformatics 2011, 27(12):1739-1740. 10.1093/bioinformatics/btr260, 3106198, 21546393.
-
(2011)
Bioinformatics
, vol.27
, Issue.12
, pp. 1739-1740
-
-
Liberzon, A.1
Subramanian, A.2
Pinchback, R.3
Thorvaldsdóttir, H.4
Tamayo, P.5
Mesirov, J.P.6
-
56
-
-
84864877553
-
Wnt/β-catenin signalling in prostate cancer
-
Kypta RM, Waxman J. Wnt/β-catenin signalling in prostate cancer. Nat Rev Urol 2012, 9:418-428.
-
(2012)
Nat Rev Urol
, vol.9
, pp. 418-428
-
-
Kypta, R.M.1
Waxman, J.2
-
57
-
-
0033072763
-
Gains of the relative genomic content of ErbB1 and ErbB2 in prostate carcinoma and their association with metastasis
-
Schwartz S, Caceres C, Morote J, De Torres I, Rodriguez-Vallejo JM, Gonzalez J, Reventos J. Gains of the relative genomic content of ErbB1 and ErbB2 in prostate carcinoma and their association with metastasis. Int J Oncol 1999, 14(2):367-371.
-
(1999)
Int J Oncol
, vol.14
, Issue.2
, pp. 367-371
-
-
Schwartz, S.1
Caceres, C.2
Morote, J.3
De Torres, I.4
Rodriguez-Vallejo, J.M.5
Gonzalez, J.6
Reventos, J.7
-
58
-
-
79959917607
-
FoxM1: a master regulator of tumor metastasis
-
10.1158/0008-5472.CAN-11-0640, 3129416, 21712406
-
Raychaudhuri P, Park HJ. FoxM1: a master regulator of tumor metastasis. Cancer Res 2011, 71(13):4329-4333. 10.1158/0008-5472.CAN-11-0640, 3129416, 21712406.
-
(2011)
Cancer Res
, vol.71
, Issue.13
, pp. 4329-4333
-
-
Raychaudhuri, P.1
Park, H.J.2
-
59
-
-
79952770168
-
MYC and metastasis
-
10.1158/0008-5472.CAN-10-3776, 3089000, 21406394
-
Wolfer A, Ramaswamy S. MYC and metastasis. Cancer Res 2011, 71(6):2034-2037. 10.1158/0008-5472.CAN-10-3776, 3089000, 21406394.
-
(2011)
Cancer Res
, vol.71
, Issue.6
, pp. 2034-2037
-
-
Wolfer, A.1
Ramaswamy, S.2
-
60
-
-
0842288337
-
Inferring cellular networks using probabilistic graphical models
-
10.1126/science.1094068, 14764868
-
Friedman N. Inferring cellular networks using probabilistic graphical models. Science 2004, 303(5659):799-805. 10.1126/science.1094068, 14764868.
-
(2004)
Science
, vol.303
, Issue.5659
, pp. 799-805
-
-
Friedman, N.1
-
61
-
-
46249100442
-
Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs
-
10.1186/gb-2008-9-1-r22, 2395258, 18226245
-
Ivan A, Halfon M, Sinha S. Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs. Genome Biol 2008, 9(1):R22. 10.1186/gb-2008-9-1-r22, 2395258, 18226245.
-
(2008)
Genome Biol
, vol.9
, Issue.1
-
-
Ivan, A.1
Halfon, M.2
Sinha, S.3
-
62
-
-
47849109461
-
Hypernetworks: A molecular evolutionary architecture for cognitive learning and memory
-
Zhang BT. Hypernetworks: A molecular evolutionary architecture for cognitive learning and memory. IEEE Computational Intelligence Magazine 2008, 3(3):49-63.
-
(2008)
IEEE Computational Intelligence Magazine
, vol.3
, Issue.3
, pp. 49-63
-
-
Zhang, B.T.1
-
64
-
-
3042799255
-
-
Cambridge University Press, Cambridge Monographs on Applied and Computational Mathematics (Vol.12)
-
Buhmann MD. Radial basis functions: theory and implementations 2003, Cambridge University Press, Cambridge Monographs on Applied and Computational Mathematics (Vol.12).
-
(2003)
Radial basis functions: theory and implementations
-
-
Buhmann, M.D.1
-
66
-
-
29144474447
-
Mining coherent dense subgraphs across massive biological networks for functional discovery
-
10.1093/bioinformatics/bti1049, 15961460
-
Hu H, Yan X, Huang Y, Han J, Zhou XJ. Mining coherent dense subgraphs across massive biological networks for functional discovery. Bioinformatics 2005, 21(suppl 1):i213-i221. 10.1093/bioinformatics/bti1049, 15961460.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
, pp. 1213-1221
-
-
Hu, H.1
Yan, X.2
Huang, Y.3
Han, J.4
Zhou, X.J.5
-
67
-
-
33947619951
-
Graph theory and networks in biology
-
10.1049/iet-syb:20060038, 17441552
-
Mason O, Verwoerd M. Graph theory and networks in biology. IET Syst Biol 2007, 1(2):89-119. 10.1049/iet-syb:20060038, 17441552.
-
(2007)
IET Syst Biol
, vol.1
, Issue.2
, pp. 89-119
-
-
Mason, O.1
Verwoerd, M.2
-
68
-
-
34547852219
-
A graph-based approach to systematically reconstruct human transcriptional regulatory modules
-
10.1093/bioinformatics/btm227, 17646346
-
Yan X, Mehan MR, Huang Y, Waterman MS, Yu PS, Zhou XZ. A graph-based approach to systematically reconstruct human transcriptional regulatory modules. Bioinformatics 2007, 23(13):i577-i586. 10.1093/bioinformatics/btm227, 17646346.
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Yan, X.1
Mehan, M.R.2
Huang, Y.3
Waterman, M.S.4
Yu, P.S.5
Zhou, X.Z.6
|