-
1
-
-
0025963132
-
Visualizing the higher order folding of a catalytic RNA molecule
-
D.W. Celander, and T.R. Cech Visualizing the higher order folding of a catalytic RNA molecule Science 251 1991 401 407
-
(1991)
Science
, vol.251
, pp. 401-407
-
-
Celander, D.W.1
Cech, T.R.2
-
2
-
-
33644954340
-
Time-resolved small-angle X-ray scattering investigation of the folding dynamics of heme oxygenase: Implication of the scaling relationship for the submillisecond intermediates of protein folding
-
T. Uzawa, and T. Kimura T. Fujisawa Time-resolved small-angle X-ray scattering investigation of the folding dynamics of heme oxygenase: implication of the scaling relationship for the submillisecond intermediates of protein folding J. Mol. Biol. 357 2006 997 1008
-
(2006)
J. Mol. Biol.
, vol.357
, pp. 997-1008
-
-
Uzawa, T.1
Kimura, T.2
Fujisawa, T.3
-
3
-
-
34250821717
-
Mechanism of coupled folding and binding of an intrinsically disordered protein
-
K. Sugase, H.J. Dyson, and P.E. Wright Mechanism of coupled folding and binding of an intrinsically disordered protein Nature 447 2007 1021 1025
-
(2007)
Nature
, vol.447
, pp. 1021-1025
-
-
Sugase, K.1
Dyson, H.J.2
Wright, P.E.3
-
4
-
-
0024344098
-
RNA-protein interactions in 30S ribosomal subunits: Folding and function of 16S rRNA
-
S. Stern, and T. Powers H.F. Noller RNA-protein interactions in 30S ribosomal subunits: folding and function of 16S rRNA Science 244 1989 783 790
-
(1989)
Science
, vol.244
, pp. 783-790
-
-
Stern, S.1
Powers, T.2
Noller, H.F.3
-
5
-
-
53749094033
-
Base sequence and higher-order structure induce the complex excited-state dynamics in DNA
-
N.K. Schwalb, and F. Temps Base sequence and higher-order structure induce the complex excited-state dynamics in DNA Science 322 2008 243 245
-
(2008)
Science
, vol.322
, pp. 243-245
-
-
Schwalb, N.K.1
Temps, F.2
-
6
-
-
33644942097
-
An electronic, aptamer-based small-molecule sensor for the rapid, label-free detection of cocaine in adulterated samples and biological fluids
-
B.R. Baker, and R.Y. Lai K.W. Plaxco An electronic, aptamer-based small-molecule sensor for the rapid, label-free detection of cocaine in adulterated samples and biological fluids J. Am. Chem. Soc. 128 2006 3138 3139
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 3138-3139
-
-
Baker, B.R.1
Lai, R.Y.2
Plaxco, K.W.3
-
7
-
-
24644478623
-
Label-free electronic detection of thrombin in blood serum by using an aptamer-based sensor
-
Y. Xiao, and A.A. Lubin K.W. Plaxco Label-free electronic detection of thrombin in blood serum by using an aptamer-based sensor Angew. Chem. Int. Ed. Engl. 44 2005 5456 5459
-
(2005)
Angew. Chem. Int. Ed. Engl.
, vol.44
, pp. 5456-5459
-
-
Xiao, Y.1
Lubin, A.A.2
Plaxco, K.W.3
-
8
-
-
41549119008
-
An RNA aptamer-based electrochemical biosensor for detection of theophylline in serum
-
E.E. Ferapontova, E.M. Olsen, and K.V. Gothelf An RNA aptamer-based electrochemical biosensor for detection of theophylline in serum J. Am. Chem. Soc. 130 2008 4256 4258
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 4256-4258
-
-
Ferapontova, E.E.1
Olsen, E.M.2
Gothelf, K.V.3
-
9
-
-
11444265452
-
Primary and secondary structure dependence of peptide flexibility assessed by fluorescence-based measurement of end-to-end collision rates
-
F. Huang, R.R. Hudgins, and W.M. Nau Primary and secondary structure dependence of peptide flexibility assessed by fluorescence-based measurement of end-to-end collision rates J. Am. Chem. Soc. 126 2004 16665 16675
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 16665-16675
-
-
Huang, F.1
Hudgins, R.R.2
Nau, W.M.3
-
10
-
-
9644310200
-
Molecular basis for the effect of urea and guanidinium chloride on the dynamics of unfolded polypeptide chains
-
A. Möglich, F. Krieger, and T. Kiefhaber Molecular basis for the effect of urea and guanidinium chloride on the dynamics of unfolded polypeptide chains J. Mol. Biol. 345 2005 153 162
-
(2005)
J. Mol. Biol.
, vol.345
, pp. 153-162
-
-
Möglich, A.1
Krieger, F.2
Kiefhaber, T.3
-
11
-
-
33846438226
-
End-to-end vs. interior loop formation kinetics in unfolded polypeptide chains
-
B. Fierz, and T. Kiefhaber End-to-end vs. interior loop formation kinetics in unfolded polypeptide chains J. Am. Chem. Soc. 129 2007 672 679
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 672-679
-
-
Fierz, B.1
Kiefhaber, T.2
-
12
-
-
0036732274
-
Rate of intramolecular contact formation in peptides: The loop length dependence
-
Z.S. Wang, and D.E. Makarov Rate of intramolecular contact formation in peptides: the loop length dependence J. Chem. Phys. 117 2002 4591 4593
-
(2002)
J. Chem. Phys.
, vol.117
, pp. 4591-4593
-
-
Wang, Z.S.1
Makarov, D.E.2
-
13
-
-
0043237588
-
Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding
-
F. Krieger, and B. Fierz T. Kiefhaber Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding J. Mol. Biol. 332 2003 265 274
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 265-274
-
-
Krieger, F.1
Fierz, B.2
Kiefhaber, T.3
-
14
-
-
33845656521
-
Dynamics of unfolded polypeptide chains in crowded environment studied by fluorescence correlation spectroscopy
-
H. Neuweiler, and M. Löllmann M. Sauer Dynamics of unfolded polypeptide chains in crowded environment studied by fluorescence correlation spectroscopy J. Mol. Biol. 365 2007 856 869
-
(2007)
J. Mol. Biol.
, vol.365
, pp. 856-869
-
-
Neuweiler, H.1
Löllmann, M.2
Sauer, M.3
-
15
-
-
0034691198
-
Measuring the rate of intramolecular contact formation in polypeptides
-
L.J. Lapidus, W.A. Eaton, and J. Hofrichter Measuring the rate of intramolecular contact formation in polypeptides Proc. Natl. Acad. Sci. USA 97 2000 7220 7225
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 7220-7225
-
-
Lapidus, L.J.1
Eaton, W.A.2
Hofrichter, J.3
-
16
-
-
0035819201
-
Loop dependence of the dynamics of DNA hairpins
-
Y.Q. Shen, S.V. Kuznetsov, and A. Ansari Loop dependence of the dynamics of DNA hairpins J. Phys. Chem. B 105 2001 12202 12211
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 12202-12211
-
-
Shen, Y.Q.1
Kuznetsov, S.V.2
Ansari, A.3
-
18
-
-
33744502886
-
The initial step of DNA hairpin folding: A kinetic analysis using fluorescence correlation spectroscopy
-
J. Kim, and S. Doose M. Sauer The initial step of DNA hairpin folding: a kinetic analysis using fluorescence correlation spectroscopy Nucleic Acids Res. 34 2006 2516 2527
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 2516-2527
-
-
Kim, J.1
Doose, S.2
Sauer, M.3
-
19
-
-
78650099766
-
Universality in the timescales of internal loop formation in unfolded proteins and single-stranded oligonucleotides
-
R.R. Cheng, and T. Uzawa D.E. Makarov Universality in the timescales of internal loop formation in unfolded proteins and single-stranded oligonucleotides Biophys. J. 99 2010 3959 3968
-
(2010)
Biophys. J.
, vol.99
, pp. 3959-3968
-
-
Cheng, R.R.1
Uzawa, T.2
Makarov, D.E.3
-
20
-
-
0037186549
-
Structure and dynamics of KH domains from FBP bound to single-stranded DNA
-
D.T. Braddock, and J.M. Louis G.M. Clore Structure and dynamics of KH domains from FBP bound to single-stranded DNA Nature 415 2002 1051 1056
-
(2002)
Nature
, vol.415
, pp. 1051-1056
-
-
Braddock, D.T.1
Louis, J.M.2
Clore, G.M.3
-
21
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
W. Winkler, A. Nahvi, and R.R. Breaker Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression Nature 419 2002 952 956
-
(2002)
Nature
, vol.419
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
22
-
-
68949129491
-
The length and viscosity dependence of end-to-end collision rates in single-stranded DNA
-
T. Uzawa, and R.R. Cheng K.W. Plaxco The length and viscosity dependence of end-to-end collision rates in single-stranded DNA Biophys. J. 97 2009 205 210
-
(2009)
Biophys. J.
, vol.97
, pp. 205-210
-
-
Uzawa, T.1
Cheng, R.R.2
Plaxco, K.W.3
-
23
-
-
28844475173
-
Diffusion-controlled first contact of the ends of a polymer: Crossover between two scaling regimes
-
J.Z.Y. Chen, H.K. Tsao, and Y.J. Sheng Diffusion-controlled first contact of the ends of a polymer: crossover between two scaling regimes Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 72 2005 031804
-
(2005)
Phys. Rev. e Stat. Nonlin. Soft Matter Phys.
, vol.72
, pp. 031804
-
-
Chen, J.Z.Y.1
Tsao, H.K.2
Sheng, Y.J.3
-
24
-
-
1442281485
-
Dynamics of chain closure: Approximate treatment of nonlocal interactions
-
P. Debnath, and B.J. Cherayil Dynamics of chain closure: approximate treatment of nonlocal interactions J. Chem. Phys. 120 2004 2482 2489
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 2482-2489
-
-
Debnath, P.1
Cherayil, B.J.2
-
25
-
-
0000842103
-
Diffusion-controlled reaction of polymers
-
M. Doi Diffusion-controlled reaction of polymers Chem. Phys. 9 1975 455 466
-
(1975)
Chem. Phys.
, vol.9
, pp. 455-466
-
-
Doi, M.1
-
26
-
-
0027650292
-
Theory of intramolecular reactions in polymeric liquids
-
B. Friedman, and B. Oshaughnessy Theory of intramolecular reactions in polymeric liquids Macromolecules 26 1993 4888 4898
-
(1993)
Macromolecules
, vol.26
, pp. 4888-4898
-
-
Friedman, B.1
Oshaughnessy, B.2
-
27
-
-
0037038514
-
Effects of chain stiffness on the dynamics of loop formation in polypeptides. Appendix: Testing a 1-dimensional diffusion model for peptide dynamics
-
L.J. Lapidus, and P.J. Steinbach J. Hofrichter Effects of chain stiffness on the dynamics of loop formation in polypeptides. Appendix: Testing a 1-dimensional diffusion model for peptide dynamics J. Phys. Chem. B 106 2002 11628 11640
-
(2002)
J. Phys. Chem. B
, vol.106
, pp. 11628-11640
-
-
Lapidus, L.J.1
Steinbach, P.J.2
Hofrichter, J.3
-
28
-
-
0030241614
-
Diffusion limited first contact of the ends of a polymer: Comparison of theory with simulation
-
R.W. Pastor, R. Zwanzig, and A. Szabo Diffusion limited first contact of the ends of a polymer: comparison of theory with simulation J. Chem. Phys. 105 1996 3878 3882
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 3878-3882
-
-
Pastor, R.W.1
Zwanzig, R.2
Szabo, A.3
-
29
-
-
0031247667
-
Simulations of polymer cyclization by Brownian dynamics
-
A. Podtelezhnikov, and A. Vologodskii Simulations of polymer cyclization by Brownian dynamics Macromolecules 30 1997 6668 6673
-
(1997)
Macromolecules
, vol.30
, pp. 6668-6673
-
-
Podtelezhnikov, A.1
Vologodskii, A.2
-
30
-
-
0037326644
-
Non-Gaussian dynamics from a simulation of a short peptide: Loop closure rates and effective diffusion coefficients
-
J.J. Portman Non-Gaussian dynamics from a simulation of a short peptide: loop closure rates and effective diffusion coefficients J. Chem. Phys. 118 2003 2381 2391
-
(2003)
J. Chem. Phys.
, vol.118
, pp. 2381-2391
-
-
Portman, J.J.1
-
31
-
-
0037471054
-
Cyclization of a polymer: First-passage problem for a non-Markovian process
-
I.M. Sokolov Cyclization of a polymer: first-passage problem for a non-Markovian process Phys. Rev. Lett. 90 2003 080601
-
(2003)
Phys. Rev. Lett.
, vol.90
, pp. 080601
-
-
Sokolov, I.M.1
-
33
-
-
36749114331
-
Diffusion-controlled intrachain reactions of polymers. 1. Theory
-
G. Wilemski, and M. Fixman Diffusion-controlled intrachain reactions of polymers. 1. Theory J. Chem. Phys. 60 1974 866 877
-
(1974)
J. Chem. Phys.
, vol.60
, pp. 866-877
-
-
Wilemski, G.1
Fixman, M.2
-
34
-
-
25444466951
-
Kinetics of transient end-to-end contact of single-stranded DNAs
-
K. Kawai, and H. Yoshida T. Majima Kinetics of transient end-to-end contact of single-stranded DNAs J. Am. Chem. Soc. 127 2005 13232 13237
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 13232-13237
-
-
Kawai, K.1
Yoshida, H.2
Majima, T.3
-
35
-
-
1642576003
-
Kinetics of end-to-end collision in short single-stranded nucleic acids
-
X.J. Wang, and W.M. Nau Kinetics of end-to-end collision in short single-stranded nucleic acids J. Am. Chem. Soc. 126 2004 808 813
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 808-813
-
-
Wang, X.J.1
Nau, W.M.2
-
36
-
-
0014220127
-
Studies of the temperature-dependent conformation and phase separation of polyriboadenylic acid solutions at neutral pH
-
H. Eisenberg, and G. Felsenfeld Studies of the temperature-dependent conformation and phase separation of polyriboadenylic acid solutions at neutral pH J. Mol. Biol. 30 1967 17 37
-
(1967)
J. Mol. Biol.
, vol.30
, pp. 17-37
-
-
Eisenberg, H.1
Felsenfeld, G.2
-
37
-
-
0000792974
-
Electron-transfer reactions of ruthenium trisbipyridyl-viologen donor-acceptor molecules - Comparison of the distance dependence of electron-transfer rates in the normal and Mmarcus inverted regions
-
E.H. Yonemoto, and G.B. Saupe T.E. Mallouk Electron-transfer reactions of ruthenium trisbipyridyl-viologen donor-acceptor molecules - comparison of the distance dependence of electron-transfer rates in the normal and Mmarcus inverted regions J. Am. Chem. Soc. 116 1994 4786 4795
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 4786-4795
-
-
Yonemoto, E.H.1
Saupe, G.B.2
Mallouk, T.E.3
-
38
-
-
0000741873
-
Coulombic effects in the quenching of photoexcited Tris(2,2′- bipyridine)ruthenium(II) and related complexes by methyl viologen
-
G.L. Gaines Coulombic effects in the quenching of photoexcited Tris(2,2′-bipyridine)ruthenium(II) and related complexes by methyl viologen J. Phys. Chem. 83 1979 3088 3091
-
(1979)
J. Phys. Chem.
, vol.83
, pp. 3088-3091
-
-
Gaines, G.L.1
-
39
-
-
25444505639
-
Electrochemical DNA hybridization detection using the fluorescence quenching label dabcyl
-
G.U. Flechsig, and J. Peter P. Grundler Electrochemical DNA hybridization detection using the fluorescence quenching label dabcyl Electrochem. Commun. 7 2005 1059 1065
-
(2005)
Electrochem. Commun.
, vol.7
, pp. 1059-1065
-
-
Flechsig, G.U.1
Peter, J.2
Grundler, P.3
-
41
-
-
0024977347
-
Low-temperature unfolding of a mutant of phage T4 lysozyme. 2. Kinetic investigations
-
B.L. Chen, W.A. Baase, and J.A. Schellman Low-temperature unfolding of a mutant of phage T4 lysozyme. 2. Kinetic investigations Biochemistry 28 1989 691 699
-
(1989)
Biochemistry
, vol.28
, pp. 691-699
-
-
Chen, B.L.1
Baase, W.A.2
Schellman, J.A.3
-
42
-
-
0026782853
-
Kinetic analysis of folding and unfolding the 56 amino acid IgG-binding domain of streptococcal protein G
-
P. Alexander, J. Orban, and P. Bryan Kinetic analysis of folding and unfolding the 56 amino acid IgG-binding domain of streptococcal protein G Biochemistry 31 1992 7243 7248
-
(1992)
Biochemistry
, vol.31
, pp. 7243-7248
-
-
Alexander, P.1
Orban, J.2
Bryan, P.3
-
43
-
-
0032570543
-
Folding kinetics of the SH3 domain of PI3 kinase by real-time NMR combined with optical spectroscopy
-
J.I. Guijarro, and C.J. Morton C.M. Dobson Folding kinetics of the SH3 domain of PI3 kinase by real-time NMR combined with optical spectroscopy J. Mol. Biol. 276 1998 657 667
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 657-667
-
-
Guijarro, J.I.1
Morton, C.J.2
Dobson, C.M.3
-
44
-
-
0000159569
-
Protein structure and the energetics of protein stability
-
A.D. Robertson, and K.P. Murphy Protein structure and the energetics of protein stability Chem. Rev. 97 1997 1251 1268
-
(1997)
Chem. Rev.
, vol.97
, pp. 1251-1268
-
-
Robertson, A.D.1
Murphy, K.P.2
-
45
-
-
33745044987
-
Solvent effects on single polymer chain physics investigated by atomic force microscopy
-
K. Nakajima, H. Watabe, and T. Nishi Solvent effects on single polymer chain physics investigated by atomic force microscopy Kgk-Kautschuk Gummi Kunststoffe. 59 2006 256 260
-
(2006)
Kgk-Kautschuk Gummi Kunststoffe.
, vol.59
, pp. 256-260
-
-
Nakajima, K.1
Watabe, H.2
Nishi, T.3
-
46
-
-
0001341140
-
Internal viscosity of polymers and the role of solvent resistance
-
C.W. Manke, and M.C. Williams Internal viscosity of polymers and the role of solvent resistance Macromolecules 18 1985 2045 2051
-
(1985)
Macromolecules
, vol.18
, pp. 2045-2051
-
-
Manke, C.W.1
Williams, M.C.2
-
48
-
-
84982063014
-
Modellmässige Deutung der inneren Viskosität (der Formzähigkeit) von Fadenmolekeln II
-
W. Kuhn, and H. Kuhn Modellmässige Deutung der inneren Viskosität (der Formzähigkeit) von Fadenmolekeln II Helv. Chim. Acta 29 1946 830 858
-
(1946)
Helv. Chim. Acta
, vol.29
, pp. 830-858
-
-
Kuhn, W.1
Kuhn, H.2
-
49
-
-
34748919662
-
Rouse model with internal friction: A coarse grained framework for single biopolymer dynamics
-
B.S. Khatri, and T.C.B. Mcleish Rouse model with internal friction: a coarse grained framework for single biopolymer dynamics Macromolecules 40 2007 6770 6777
-
(2007)
Macromolecules
, vol.40
, pp. 6770-6777
-
-
Khatri, B.S.1
McLeish, T.C.B.2
-
50
-
-
84862076708
-
Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy
-
A. Soranno, and A. Buchli B. Schuler Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy Proc. Natl. Acad. Sci. USA 109 2012 17800 17806
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 17800-17806
-
-
Soranno, A.1
Buchli, A.2
Schuler, B.3
-
51
-
-
77957916566
-
Solvent viscosity and friction in protein folding dynamics
-
S.J. Hagen Solvent viscosity and friction in protein folding dynamics Curr. Protein Pept. Sci. 11 2010 385 395
-
(2010)
Curr. Protein Pept. Sci.
, vol.11
, pp. 385-395
-
-
Hagen, S.J.1
-
52
-
-
1642379707
-
A limiting speed for protein folding at low solvent viscosity
-
L.L. Qiu, and S.J. Hagen A limiting speed for protein folding at low solvent viscosity J. Am. Chem. Soc. 126 2004 3398 3399
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 3398-3399
-
-
Qiu, L.L.1
Hagen, S.J.2
-
53
-
-
84874524176
-
Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models
-
10.1063/1.4792206
-
R.R. Cheng, A.T. Hawk, and D.E. Makarov Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models J. Chem. Phys. 138 2013 074112 10.1063/1.4792206
-
(2013)
J. Chem. Phys.
, vol.138
, pp. 074112
-
-
Cheng, R.R.1
Hawk, A.T.2
Makarov, D.E.3
-
54
-
-
51149221061
-
Molecular formulation of internal viscosity in polymer dynamics, and stress symmetry
-
E.R. Bazua, and M.C. Williams Molecular formulation of internal viscosity in polymer dynamics, and stress symmetry J. Chem. Phys. 59 1973 2858 2868
-
(1973)
J. Chem. Phys.
, vol.59
, pp. 2858-2868
-
-
Bazua, E.R.1
Williams, M.C.2
-
55
-
-
0037035690
-
Helix inversions in polypropylene and polystyrene
-
S. Bruckner, G. Allegra, and P. Corradini Helix inversions in polypropylene and polystyrene Macromolecules 35 2002 3928 3936
-
(2002)
Macromolecules
, vol.35
, pp. 3928-3936
-
-
Bruckner, S.1
Allegra, G.2
Corradini, P.3
-
57
-
-
0033578370
-
The speed limit for protein folding measured by triplet-triplet energy transfer
-
O. Bieri, and J. Wirz T. Kiefhaber The speed limit for protein folding measured by triplet-triplet energy transfer Proc. Natl. Acad. Sci. USA 96 1999 9597 9601
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 9597-9601
-
-
Bieri, O.1
Wirz, J.2
Kiefhaber, T.3
-
58
-
-
0014945021
-
Conformation of polyribouridylic acid in solution
-
L.D. Inners, and G. Felsenfeld Conformation of polyribouridylic acid in solution J. Mol. Biol. 50 1970 373 389
-
(1970)
J. Mol. Biol.
, vol.50
, pp. 373-389
-
-
Inners, L.D.1
Felsenfeld, G.2
|