-
1
-
-
43449091567
-
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
-
18472421 10.1016/j.cub.2008.04.042 1:CAS:528:DC%2BD1cXmtVakt7w%3D
-
Addo-Quaye C, Eshoo TW, Bartel DP, Axtell MJ (2008) Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol 18:758-762
-
(2008)
Curr Biol
, vol.18
, pp. 758-762
-
-
Addo-Quaye, C.1
Eshoo, T.W.2
Bartel, D.P.3
Axtell, M.J.4
-
2
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
15565108 10.1038/ng1478 1:CAS:528:DC%2BD2cXhtVWitLjK
-
Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, Carrington JC (2004) Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 36:1282-1290
-
(2004)
Nat Genet
, vol.36
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
Carrington, J.C.6
-
3
-
-
84864526187
-
High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice
-
22862743 10.1186/1471-2229-12-132 1:CAS:528:DC%2BC38Xhslals73M
-
Barrera-Figueroa BE, Gao L, Wu Z, Zhou X, Zhu J, Jin H, Liu R, Zhu JK (2012) High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice. BMC Plant Biol 12:132
-
(2012)
BMC Plant Biol
, vol.12
, pp. 132
-
-
Barrera-Figueroa, B.E.1
Gao, L.2
Wu, Z.3
Zhou, X.4
Zhu, J.5
Jin, H.6
Liu, R.7
Zhu, J.K.8
-
4
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
19167326 10.1016/j.cell.2009.01.002 1:CAS:528:DC%2BD1MXhs1Kiuro%3D
-
Bartel DP (2009) MicroRNAs: target recognition and regulatory functions. Cell 136:215-233
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
5
-
-
45849122499
-
Widespread translational inhibition by plant miRNAs and siRNAs
-
18483398 10.1126/science.1159151 1:CAS:528:DC%2BD1cXmt1Ois74%3D
-
Brodersen P, Sakvarelidze-Achard L, Bruun-Rasmussen M, Dunoyer P, Yamamoto YY, Sieburth L, Voinnet O (2008) Widespread translational inhibition by plant miRNAs and siRNAs. Science 320:1185-1190
-
(2008)
Science
, vol.320
, pp. 1185-1190
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Bruun-Rasmussen, M.3
Dunoyer, P.4
Yamamoto, Y.Y.5
Sieburth, L.6
Voinnet, O.7
-
6
-
-
84860654433
-
Transposable-element associated small RNAs in Bombyx mori genome
-
22662121 10.1371/journal.pone.0036599 1:CAS:528:DC%2BC38Xns1agsLw%3D
-
Cai Y, Zhou Q, Yu C, Wang X, Hu S, Yu J, Yu X (2012) Transposable-element associated small RNAs in Bombyx mori genome. PLoS One 7:e36599
-
(2012)
PLoS One
, vol.7
, pp. 36599
-
-
Cai, Y.1
Zhou, Q.2
Yu, C.3
Wang, X.4
Hu, S.5
Yu, J.6
Yu, X.7
-
7
-
-
79956144553
-
Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
-
21525786 10.4161/rna.8.3.15199 1:CAS:528:DC%2BC38XovVKrug%3D%3D
-
Chen CJ, Liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D (2011) Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus. RNA Biol 8:538-547
-
(2011)
RNA Biol
, vol.8
, pp. 538-547
-
-
Chen, C.J.1
Liu, Q.2
Zhang, Y.C.3
Qu, L.H.4
Chen, Y.Q.5
Gautheret, D.6
-
8
-
-
0023277545
-
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
-
2440339 10.1016/0003-2697(87)90021-2 1:CAS:528:DyaL2sXitFSns7Y%3D
-
Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162:156-159
-
(1987)
Anal Biochem
, vol.162
, pp. 156-159
-
-
Chomczynski, P.1
Sacchi, N.2
-
9
-
-
79953086307
-
Evolution and functional diversification of MIRNA genes
-
21317375 10.1105/tpc.110.082784 1:CAS:528:DC%2BC3MXkvVOku7o%3D
-
Cuperus JT, Fahlgren N, Carrington JC (2011) Evolution and functional diversification of MIRNA genes. Plant Cell 23:431-442
-
(2011)
Plant Cell
, vol.23
, pp. 431-442
-
-
Cuperus, J.T.1
Fahlgren, N.2
Carrington, J.C.3
-
10
-
-
79959967431
-
PsRNATarget: A plant small RNA target analysis server
-
21622958 10.1093/nar/gkr319 1:CAS:528:DC%2BC3MXosVOnt7w%3D
-
Dai X, Zhao PX (2011) psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 39:W155-W159
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Dai, X.1
Zhao, P.X.2
-
11
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes
-
17299599 10.1371/journal.pone.0000219
-
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC (2007) High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS One 2:e219
-
(2007)
PLoS One
, vol.2
, pp. 219
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
Cumbie, J.S.6
Givan, S.A.7
Law, T.F.8
Grant, S.R.9
Dangl, J.L.10
Carrington, J.C.11
-
12
-
-
57049169777
-
Evolution of Arabidopsis thaliana microRNAs from random sequences
-
18952822 10.1261/rna.1149408
-
Felippes FF, Schneeberger K, Dezulian T, Huson DH, Weigel D (2008) Evolution of Arabidopsis thaliana microRNAs from random sequences. RNA 14:2455-2459
-
(2008)
RNA
, vol.14
, pp. 2455-2459
-
-
Felippes, F.F.1
Schneeberger, K.2
Dezulian, T.3
Huson, D.H.4
Weigel, D.5
-
13
-
-
49449118943
-
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
-
18542052 10.1038/nbt1417 1:CAS:528:DC%2BD1cXps1WlsLw%3D
-
German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ (2008) Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat Biotechnol 26:941-946
-
(2008)
Nat Biotechnol
, vol.26
, pp. 941-946
-
-
German, M.A.1
Pillay, M.2
Jeong, D.H.3
Hetawal, A.4
Luo, S.5
Janardhanan, P.6
Kannan, V.7
Rymarquis, L.A.8
Nobuta, K.9
German, R.10
De Paoli, E.11
Lu, C.12
Schroth, G.13
Meyers, B.C.14
Green, P.J.15
-
14
-
-
84863012576
-
Massive analysis of rice small RNAs: Mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
-
22158467 10.1105/tpc.111.089045 1:CAS:528:DC%2BC38XitVKqsLs%3D
-
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ (2011) Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. Plant Cell 23:4185-4207
-
(2011)
Plant Cell
, vol.23
, pp. 4185-4207
-
-
Jeong, D.H.1
Park, S.2
Zhai, J.3
Gurazada, S.G.4
De Paoli, E.5
Meyers, B.C.6
Green, P.J.7
-
15
-
-
1542321148
-
Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs)
-
15003209 10.1016/j.pbi.2004.01.004 1:CAS:528:DC%2BD2cXhslCiu7s%3D
-
Jiang N, Feschotte C, Zhang X, Wessler SR (2004) Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs). Curr Opin Plant Biol 7:115-119
-
(2004)
Curr Opin Plant Biol
, vol.7
, pp. 115-119
-
-
Jiang, N.1
Feschotte, C.2
Zhang, X.3
Wessler, S.R.4
-
16
-
-
61449173808
-
Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs
-
19037014 10.1101/gr.078196.108 1:CAS:528:DC%2BD1MXptFWjtw%3D%3D
-
Kuang H, Padmanabhan C, Li F, Kamei A, Bhaskar PB, Ouyang S, Jiang J, Buell CR, Baker B (2009) Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs. Genome Res 19:42-56
-
(2009)
Genome Res
, vol.19
, pp. 42-56
-
-
Kuang, H.1
Padmanabhan, C.2
Li, F.3
Kamei, A.4
Bhaskar, P.B.5
Ouyang, S.6
Jiang, J.7
Buell, C.R.8
Baker, B.9
-
17
-
-
68949115601
-
Biochemical evidence for translational repression by Arabidopsis microRNAs
-
19531599 10.1105/tpc.108.063412 1:CAS:528:DC%2BD1MXpvFOks70%3D
-
Lanet E, Delannoy E, Sormani R, Floris M, Brodersen P, Crete P, Voinnet O, Robaglia C (2009) Biochemical evidence for translational repression by Arabidopsis microRNAs. Plant Cell 21:1762-1768
-
(2009)
Plant Cell
, vol.21
, pp. 1762-1768
-
-
Lanet, E.1
Delannoy, E.2
Sormani, R.3
Floris, M.4
Brodersen, P.5
Crete, P.6
Voinnet, O.7
Robaglia, C.8
-
18
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
19261174 10.1186/gb-2009-10-3-r25
-
Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25
-
(2009)
Genome Biol
, vol.10
, pp. 25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
19
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
17846036 10.1093/bioinformatics/btm404 1:CAS:528:DC%2BD2sXhtlaqsL%2FM
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
20
-
-
79952358840
-
Small RNA activity and function in angiosperm gametophytes
-
21172810 10.1093/jxb/erq399
-
Le Trionnaire G, Grant-Downton RT, Kourmpetli S, Dickinson HG, Twell D (2011) Small RNA activity and function in angiosperm gametophytes. J Exp Bot 62:1601-1610
-
(2011)
J Exp Bot
, vol.62
, pp. 1601-1610
-
-
Le Trionnaire, G.1
Grant-Downton, R.T.2
Kourmpetli, S.3
Dickinson, H.G.4
Twell, D.5
-
21
-
-
77952832325
-
Transcriptome-wide identification of microRNA targets in rice
-
20202174 10.1111/j.1365-313X.2010.04187.x 1:CAS:528:DC%2BC3cXnslCgsrw%3D
-
Li YF, Zheng Y, Addo-Quaye C, Zhang L, Saini A, Jagadeeswaran G, Axtell MJ, Zhang W, Sunkar R (2010) Transcriptome-wide identification of microRNA targets in rice. Plant J 62:742-759
-
(2010)
Plant J
, vol.62
, pp. 742-759
-
-
Li, Y.F.1
Zheng, Y.2
Addo-Quaye, C.3
Zhang, L.4
Saini, A.5
Jagadeeswaran, G.6
Axtell, M.J.7
Zhang, W.8
Sunkar, R.9
-
22
-
-
79955780739
-
Domestication of transposable elements into microRNA genes in plants
-
21559273 10.1371/journal.pone.0019212 1:CAS:528:DC%2BC3MXlvFOqsrw%3D
-
Li Y, Li C, Xia J, Jin Y (2011) Domestication of transposable elements into microRNA genes in plants. PLoS One 6:e19212
-
(2011)
PLoS One
, vol.6
, pp. 19212
-
-
Li, Y.1
Li, C.2
Xia, J.3
Jin, Y.4
-
23
-
-
84871329875
-
How important are transposons for plant evolution?
-
10.1038/nrg3374
-
Lisch D (2012) How important are transposons for plant evolution? Nat Rev Genet 14:49-61
-
(2012)
Nat Rev Genet
, vol.14
, pp. 49-61
-
-
Lisch, D.1
-
24
-
-
42449150879
-
Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
-
18353984 10.1073/pnas.0708743105 1:CAS:528:DC%2BD1cXktlShsbc%3D
-
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ (2008) Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs). Proc Natl Acad Sci U S A 105:4951-4956
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4951-4956
-
-
Lu, C.1
Jeong, D.H.2
Kulkarni, K.3
Pillay, M.4
Nobuta, K.5
German, R.6
Thatcher, S.R.7
Maher, C.8
Zhang, L.9
Ware, D.10
Liu, B.11
Cao, X.12
Meyers, B.C.13
Green, P.J.14
-
25
-
-
79551640033
-
Form, function, and regulation of ARGONAUTE proteins
-
21183704 10.1105/tpc.110.080671 1:CAS:528:DC%2BC3MXhvFGrtro%3D
-
Mallory A, Vaucheret H (2010) Form, function, and regulation of ARGONAUTE proteins. Plant Cell 22:3879-3889
-
(2010)
Plant Cell
, vol.22
, pp. 3879-3889
-
-
Mallory, A.1
Vaucheret, H.2
-
26
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
10329189 10.1006/jmbi.1999.2700 1:CAS:528:DyaK1MXjtVers7Y%3D
-
Mathews DH, Sabina J, Zuker M, Turner DH (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol 288:911-940
-
(1999)
J Mol Biol
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
27
-
-
84869092886
-
Transposable element small RNAs as regulators of gene expression
-
23040327 10.1016/j.tig.2012.09.001 1:CAS:528:DC%2BC38XhsVKgs7vN
-
McCue AD, Slotkin RK (2012) Transposable element small RNAs as regulators of gene expression. Trends Genet 28:616-623
-
(2012)
Trends Genet
, vol.28
, pp. 616-623
-
-
McCue, A.D.1
Slotkin, R.K.2
-
28
-
-
84859199684
-
Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA
-
22346759 10.1371/journal.pgen.1002474 1:CAS:528:DC%2BC38XivVWgs7s%3D
-
McCue AD, Nuthikattu S, Reeder SH, Slotkin RK (2012) Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA. PLoS Genet 8:e1002474
-
(2012)
PLoS Genet
, vol.8
, pp. 1002474
-
-
McCue, A.D.1
Nuthikattu, S.2
Reeder, S.H.3
Slotkin, R.K.4
-
29
-
-
70350515004
-
Unexpected consequences of a sudden and massive transposon amplification on rice gene expression
-
19847266 10.1038/nature08479 1:CAS:528:DC%2BD1MXhtlKjsrzO
-
Naito K, Zhang F, Tsukiyama T, Saito H, Hancock CN, Richardson AO, Okumoto Y, Tanisaka T, Wessler SR (2009) Unexpected consequences of a sudden and massive transposon amplification on rice gene expression. Nature 461:1130-1134
-
(2009)
Nature
, vol.461
, pp. 1130-1134
-
-
Naito, K.1
Zhang, F.2
Tsukiyama, T.3
Saito, H.4
Hancock, C.N.5
Richardson, A.O.6
Okumoto, Y.7
Tanisaka, T.8
Wessler, S.R.9
-
30
-
-
34147098535
-
An expression atlas of rice mRNAs and small RNAs
-
10.1038/nbt1291 1:CAS:528:DC%2BD2sXktVeksLY%3D
-
Nobuta K, Venu RC, Lu C, Belo A, Vemaraju K, Kulkarni K, Wang W, Pillay M, Green PJ, Wang GL, Meyers BC (2007) An expression atlas of rice mRNAs and small RNAs. Nat Biotech 25:473-477
-
(2007)
Nat Biotech
, vol.25
, pp. 473-477
-
-
Nobuta, K.1
Venu, R.C.2
Lu, C.3
Belo, A.4
Vemaraju, K.5
Kulkarni, K.6
Wang, W.7
Pillay, M.8
Green, P.J.9
Wang, G.L.10
Meyers, B.C.11
-
31
-
-
84866946845
-
Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice
-
23028360 10.1371/journal.pgen.1002953 1:CAS:528:DC%2BC38XhsV2jtb7E
-
Nosaka M, Itoh JI, Nagato Y, Ono A, Ishiwata A, Sato Y (2012) Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice. PLoS Genet 8:e1002953
-
(2012)
PLoS Genet
, vol.8
, pp. 1002953
-
-
Nosaka, M.1
Itoh, J.I.2
Nagato, Y.3
Ono, A.4
Ishiwata, A.5
Sato, Y.6
-
32
-
-
77950086568
-
Control of female gamete formation by a small RNA pathway in Arabidopsis
-
20208518 10.1038/nature08828 1:CAS:528:DC%2BC3cXivVCiu78%3D
-
Olmedo-Monfil V, Duran-Figueroa N, Arteaga-Vazquez M, Demesa-Arevalo E, Autran D, Grimanelli D, Slotkin RK, Martienssen RA, Vielle-Calzada JP (2010) Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature 464:628-632
-
(2010)
Nature
, vol.464
, pp. 628-632
-
-
Olmedo-Monfil, V.1
Duran-Figueroa, N.2
Arteaga-Vazquez, M.3
Demesa-Arevalo, E.4
Autran, D.5
Grimanelli, D.6
Slotkin, R.K.7
Martienssen, R.A.8
Vielle-Calzada, J.P.9
-
33
-
-
84865423297
-
MicroRNA profiles and their control of male gametophyte development in rice
-
22403030 10.1007/s11103-012-9898-x 1:CAS:528:DC%2BC38XhtF2rs7vL
-
Peng H, Chun J, T-b A, Y-a T, Zhang R, M-m Z, Chen F, S-h W (2012) MicroRNA profiles and their control of male gametophyte development in rice. Plant Mol Biol 80:85-102
-
(2012)
Plant Mol Biol
, vol.80
, pp. 85-102
-
-
Peng, H.1
Chun, J.2
T-B, A.3
Y-A, T.4
Zhang, R.5
M-M, Z.6
Chen, F.7
S-H, W.8
-
34
-
-
34250776711
-
A family of human microRNA genes from miniature inverted-repeat transposable elements
-
17301878 10.1371/journal.pone.0000203
-
Piriyapongsa J, Jordan IK (2007) A family of human microRNA genes from miniature inverted-repeat transposable elements. PLoS One 2:e203
-
(2007)
PLoS One
, vol.2
, pp. 203
-
-
Piriyapongsa, J.1
Jordan, I.K.2
-
35
-
-
42449099982
-
Dual coding of siRNAs and miRNAs by plant transposable elements
-
18367716 10.1261/rna.916708 1:CAS:528:DC%2BD1cXls1anu7c%3D
-
Piriyapongsa J, Jordan IK (2008) Dual coding of siRNAs and miRNAs by plant transposable elements. RNA 14:814-821
-
(2008)
RNA
, vol.14
, pp. 814-821
-
-
Piriyapongsa, J.1
Jordan, I.K.2
-
36
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
17182867 10.1101/gad.1476406 1:CAS:528:DC%2BD2sXhs1ejsw%3D%3D
-
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP (2006) A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 20:3407-3425
-
(2006)
Genes Dev
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
Bartel, D.P.4
-
37
-
-
84861841898
-
Differential effects of viral silencing suppressors on siRNA and miRNA loading support the existence of two distinct cellular pools of ARGONAUTE1
-
22531783 10.1038/emboj.2012.92 1:CAS:528:DC%2BC38XmtVektLk%3D
-
Schott G, Mari-Ordonez A, Himber C, Alioua A, Voinnet O, Dunoyer P (2012) Differential effects of viral silencing suppressors on siRNA and miRNA loading support the existence of two distinct cellular pools of ARGONAUTE1. EMBO J 31:2553-2565
-
(2012)
EMBO J
, vol.31
, pp. 2553-2565
-
-
Schott, G.1
Mari-Ordonez, A.2
Himber, C.3
Alioua, A.4
Voinnet, O.5
Dunoyer, P.6
-
38
-
-
19444367079
-
Mammalian microRNAs derived from genomic repeats
-
15922829 10.1016/j.tig.2005.04.008 1:CAS:528:DC%2BD2MXks1Cmsb4%3D
-
Smalheiser NR, Torvik VI (2005) Mammalian microRNAs derived from genomic repeats. Trends Genet 21:322-326
-
(2005)
Trends Genet
, vol.21
, pp. 322-326
-
-
Smalheiser, N.R.1
Torvik, V.I.2
-
39
-
-
84856288115
-
Roles of DCL4 and DCL3b in rice phased small RNA biogenesis
-
21973320 10.1111/j.1365-313X.2011.04805.x 1:CAS:528:DC%2BC38Xislemt7g%3D
-
Song X, Li P, Zhai J, Zhou M, Ma L, Liu B, Jeong DH, Nakano M, Cao S, Liu C, Chu C, Wang XJ, Green PJ, Meyers BC, Cao X (2012) Roles of DCL4 and DCL3b in rice phased small RNA biogenesis. Plant J 69:462-474
-
(2012)
Plant J
, vol.69
, pp. 462-474
-
-
Song, X.1
Li, P.2
Zhai, J.3
Zhou, M.4
Ma, L.5
Liu, B.6
Jeong, D.H.7
Nakano, M.8
Cao, S.9
Liu, C.10
Chu, C.11
Wang, X.J.12
Green, P.J.13
Meyers, B.C.14
Cao, X.15
-
40
-
-
42149157716
-
Identification of novel and candidate miRNAs in rice by high throughput sequencing
-
18312648 10.1186/1471-2229-8-25
-
Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK (2008) Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol 8:25
-
(2008)
BMC Plant Biol
, vol.8
, pp. 25
-
-
Sunkar, R.1
Zhou, X.2
Zheng, Y.3
Zhang, W.4
Zhu, J.K.5
-
42
-
-
38549136871
-
The Rice Annotation Project Database (RAP-DB): 2008 update
-
18089549 1:CAS:528:DC%2BD1cXhtVSqtb4%3D
-
Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T, Aono R, Fujii Y, Habara T, Harada E, Kanno M, Kawahara Y, Kawashima H, Kubooka H, Matsuya A, Nakaoka H, Saichi N, Sanbonmatsu R, Sato Y, Shinso Y, Suzuki M, Takeda J, Tanino M, Todokoro F, Yamaguchi K, Yamamoto N, Yamasaki C, Imanishi T, Okido T, Tada M, Ikeo K, Tateno Y, Gojobori T, Lin YC, Wei FJ, Hsing YI, Zhao Q, Han B, Kramer MR, McCombie RW, Lonsdale D, O'Donovan CC, Whitfield EJ, Apweiler R, Koyanagi KO, Khurana JP, Raghuvanshi S, Singh NK, Tyagi AK, Haberer G, Fujisawa M, Hosokawa S, Ito Y, Ikawa H, Shibata M, Yamamoto M, Bruskiewich RM, Hoen DR, Bureau TE, Namiki N, Ohyanagi H, Sakai Y, Nobushima S, Sakata K, Barrero RA, Sato Y, Souvorov A, Smith-White B, Tatusova T, An S, An G, OOta S, Fuks G, Fuks G, Messing J, Christie KR, Lieberherr D, Kim H, Zuccolo A, Wing RA, Nobuta K, Green PJ, Lu C, Meyers BC, Chaparro C, Piegu B, Panaud O, Echeverria M (2008) The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res 36:D1028-D1033
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Tanaka, T.1
Antonio, B.A.2
Kikuchi, S.3
Matsumoto, T.4
Nagamura, Y.5
Numa, H.6
Sakai, H.7
Wu, J.8
Itoh, T.9
Sasaki, T.10
Aono, R.11
Fujii, Y.12
Habara, T.13
Harada, E.14
Kanno, M.15
Kawahara, Y.16
Kawashima, H.17
Kubooka, H.18
Matsuya, A.19
Nakaoka, H.20
Saichi, N.21
Sanbonmatsu, R.22
Sato, Y.23
Shinso, Y.24
Suzuki, M.25
Takeda, J.26
Tanino, M.27
Todokoro, F.28
Yamaguchi, K.29
Yamamoto, N.30
Yamasaki, C.31
Imanishi, T.32
Okido, T.33
Tada, M.34
Ikeo, K.35
Tateno, Y.36
Gojobori, T.37
Lin, Y.C.38
Wei, F.J.39
Hsing, Y.I.40
Zhao, Q.41
Han, B.42
Kramer, M.R.43
McCombie, R.W.44
Lonsdale, D.45
O'Donovan, C.C.46
Whitfield, E.J.47
Apweiler, R.48
Koyanagi, K.O.49
Khurana, J.P.50
Raghuvanshi, S.51
Singh, N.K.52
Tyagi, A.K.53
Haberer, G.54
Fujisawa, M.55
Hosokawa, S.56
Ito, Y.57
Ikawa, H.58
Shibata, M.59
Yamamoto, M.60
Bruskiewich, R.M.61
Hoen, D.R.62
Bureau, T.E.63
Namiki, N.64
Ohyanagi, H.65
Sakai, Y.66
Nobushima, S.67
Sakata, K.68
Barrero, R.A.69
Sato, Y.70
Souvorov, A.71
Smith-White, B.72
Tatusova, T.73
An, S.74
An, G.75
Oota, S.76
Fuks, G.77
Fuks, G.78
Messing, J.79
Christie, K.R.80
Lieberherr, D.81
Kim, H.82
Zuccolo, A.83
Wing, R.A.84
Nobuta, K.85
Green, P.J.86
Lu, C.87
Meyers, B.C.88
Chaparro, C.89
Piegu, B.90
Panaud, O.91
Echeverria, M.92
more..
-
43
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
19239888 10.1016/j.cell.2009.01.046 1:CAS:528:DC%2BD1MXkvFGksbs%3D
-
Voinnet O (2009) Origin, biogenesis, and activity of plant microRNAs. Cell 136:669-687
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
44
-
-
22144433672
-
A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes
-
15980147 10.1073/pnas.0504029102 1:CAS:528:DC%2BD2MXmsVaktbg%3D
-
Williams L, Carles CC, Osmont KS, Fletcher JC (2005) A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes. Proc Natl Acad Sci U S A 102:9703-9708
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 9703-9708
-
-
Williams, L.1
Carles, C.C.2
Osmont, K.S.3
Fletcher, J.C.4
-
45
-
-
73249125240
-
Rice microRNA effector complexes and targets
-
19903869 10.1105/tpc.109.070938 1:CAS:528:DC%2BC3cXovVWrsQ%3D%3D
-
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y (2009) Rice microRNA effector complexes and targets. Plant Cell 21:3421-3435
-
(2009)
Plant Cell
, vol.21
, pp. 3421-3435
-
-
Wu, L.1
Zhang, Q.2
Zhou, H.3
Ni, F.4
Wu, X.5
Qi, Y.6
-
46
-
-
77951974552
-
DNA methylation mediated by a microRNA pathway
-
20381393 10.1016/j.molcel.2010.03.008 1:CAS:528:DC%2BC3cXms1alsbc%3D
-
Wu L, Zhou H, Zhang Q, Zhang J, Ni F, Liu C, Qi Y (2010) DNA methylation mediated by a microRNA pathway. Mol Cell 38:465-475
-
(2010)
Mol Cell
, vol.38
, pp. 465-475
-
-
Wu, L.1
Zhou, H.2
Zhang, Q.3
Zhang, J.4
Ni, F.5
Liu, C.6
Qi, Y.7
-
47
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
15024409 10.1371/journal.pbio.0020104
-
Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC (2004) Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2:E104
-
(2004)
PLoS Biol
, vol.2
, pp. 104
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
Jacobsen, S.E.7
Carrington, J.C.8
-
48
-
-
63349083143
-
Characterization and expression profiles of miRNAs in rice seeds
-
19103661 10.1093/nar/gkn998 1:CAS:528:DC%2BD1MXisFekuro%3D
-
Xue LJ, Zhang JJ, Xue HW (2009) Characterization and expression profiles of miRNAs in rice seeds. Nucleic Acids Res 37:916-930
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 916-930
-
-
Xue, L.J.1
Zhang, J.J.2
Xue, H.W.3
-
49
-
-
84960125795
-
Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica)
-
10.1007/s11515-010-0007-8 1:CAS:528:DC%2BC3cXmtlKrsrY%3D
-
Zhou M, Gu L, Li P, Song X, Wei L, Chen Z, Cao X (2010) Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica). Front Biol 5:67-90
-
(2010)
Front Biol
, vol.5
, pp. 67-90
-
-
Zhou, M.1
Gu, L.2
Li, P.3
Song, X.4
Wei, L.5
Chen, Z.6
Cao, X.7
-
50
-
-
50649110065
-
A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
-
18687877 10.1101/gr.075572.107 1:CAS:528:DC%2BD1cXhtV2qsr3P
-
Zhu QH, Spriggs A, Matthew L, Fan LJ, Kennedy G, Gubler F, Helliwell C (2008) A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains. Genome Res 18:1456-1465
-
(2008)
Genome Res
, vol.18
, pp. 1456-1465
-
-
Zhu, Q.H.1
Spriggs, A.2
Matthew, L.3
Fan, L.J.4
Kennedy, G.5
Gubler, F.6
Helliwell, C.7
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