-
1
-
-
1542513556
-
Mobile elements: drivers of genome evolution
-
Kazazian HH Jr, (2004) Mobile elements: drivers of genome evolution. Science 303: 1626-1632.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian Jr., H.H.1
-
2
-
-
0036250001
-
Plant transposable elements: where genetics meets genomics
-
Feschotte C, Jiang N, Wessler SR, (2002) Plant transposable elements: where genetics meets genomics. Nat Rev Genet 3: 329-341.
-
(2002)
Nat Rev Genet
, vol.3
, pp. 329-341
-
-
Feschotte, C.1
Jiang, N.2
Wessler, S.R.3
-
3
-
-
60149098474
-
Small RNAs as guardians of the genome
-
Malone CD, Hannon GJ, (2009) Small RNAs as guardians of the genome. Cell 136: 656-668.
-
(2009)
Cell
, vol.136
, pp. 656-668
-
-
Malone, C.D.1
Hannon, G.J.2
-
4
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
Slotkin RK, Martienssen R, (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8: 272-285.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
5
-
-
39949083375
-
Conserved themes in small-RNA-mediated transposon control
-
Girard A, Hannon GJ, (2008) Conserved themes in small-RNA-mediated transposon control. Trends Cell Biol 18: 136-148.
-
(2008)
Trends Cell Biol
, vol.18
, pp. 136-148
-
-
Girard, A.1
Hannon, G.J.2
-
6
-
-
42349096534
-
Transposable elements and the evolution of regulatory networks
-
Feschotte C, (2008) Transposable elements and the evolution of regulatory networks. Nat Rev Genet 9: 397-405.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 397-405
-
-
Feschotte, C.1
-
7
-
-
36549081460
-
Give-and-take: interactions between DNA transposons and their host plant genomes
-
Dooner HK, Weil CF, (2007) Give-and-take: interactions between DNA transposons and their host plant genomes. Curr Opin Genet Dev 17: 486-492.
-
(2007)
Curr Opin Genet Dev
, vol.17
, pp. 486-492
-
-
Dooner, H.K.1
Weil, C.F.2
-
8
-
-
11144245992
-
Transposition of hAT elements links transposable elements and V(D)J recombination
-
Zhou L, Mitra R, Atkinson PW, Hickman AB, Dyda F, et al. (2004) Transposition of hAT elements links transposable elements and V(D)J recombination. Nature 432: 995-1001.
-
(2004)
Nature
, vol.432
, pp. 995-1001
-
-
Zhou, L.1
Mitra, R.2
Atkinson, P.W.3
Hickman, A.B.4
Dyda, F.5
-
9
-
-
0030938901
-
Reverse transcriptase motifs in the catalytic subunit of telomerase
-
Lingner J, Hughes TR, Shevchenko A, Mann M, Lundblad V, et al. (1997) Reverse transcriptase motifs in the catalytic subunit of telomerase. Science 276: 561-567.
-
(1997)
Science
, vol.276
, pp. 561-567
-
-
Lingner, J.1
Hughes, T.R.2
Shevchenko, A.3
Mann, M.4
Lundblad, V.5
-
10
-
-
0030745448
-
hEST2, the putative human telomerase catalytic subunit gene, is up-regulated in tumor cells and during immortalization
-
Meyerson M, Counter CM, Eaton EN, Ellisen LW, Steiner P, et al. (1997) hEST2, the putative human telomerase catalytic subunit gene, is up-regulated in tumor cells and during immortalization. Cell 90: 785-795.
-
(1997)
Cell
, vol.90
, pp. 785-795
-
-
Meyerson, M.1
Counter, C.M.2
Eaton, E.N.3
Ellisen, L.W.4
Steiner, P.5
-
11
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
-
doi:10.1371/journal.pone.0000219
-
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, et al. (2007) High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS ONE 2 (2): e219 doi:10.1371/journal.pone.0000219.
-
(2007)
PLoS ONE
, vol.2
, Issue.2
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
-
12
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet O, (2009) Origin, biogenesis, and activity of plant microRNAs. Cell 136: 669-687.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
13
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
14
-
-
60149090481
-
Criteria for annotation of plant MicroRNAs
-
Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, et al. (2008) Criteria for annotation of plant MicroRNAs. Plant Cell 20: 3186-3190.
-
(2008)
Plant Cell
, vol.20
, pp. 3186-3190
-
-
Meyers, B.C.1
Axtell, M.J.2
Bartel, B.3
Bartel, D.P.4
Baulcombe, D.5
-
15
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, et al. (2004) Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 36: 1282-1290.
-
(2004)
Nat Genet
, vol.36
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
-
16
-
-
57049169777
-
Evolution of Arabidopsis thaliana microRNAs from random sequences
-
de Felippes FF, Schneeberger K, Dezulian T, Huson DH, Weigel D, (2008) Evolution of Arabidopsis thaliana microRNAs from random sequences. RNA 14: 2455-2459.
-
(2008)
RNA
, vol.14
, pp. 2455-2459
-
-
de Felippes, F.F.1
Schneeberger, K.2
Dezulian, T.3
Huson, D.H.4
Weigel, D.5
-
17
-
-
19444367079
-
Mammalian microRNAs derived from genomic repeats
-
Smalheiser NR, Torvik VI, (2005) Mammalian microRNAs derived from genomic repeats. Trends Genet 21: 322-326.
-
(2005)
Trends Genet
, vol.21
, pp. 322-326
-
-
Smalheiser, N.R.1
Torvik, V.I.2
-
18
-
-
34147147595
-
The evolution of animal microRNA function
-
Niwa R, Slack FJ, (2007) The evolution of animal microRNA function. Curr Opin Genet Dev 17: 145-150.
-
(2007)
Curr Opin Genet Dev
, vol.17
, pp. 145-150
-
-
Niwa, R.1
Slack, F.J.2
-
19
-
-
34250776711
-
A family of human microRNA genes from miniature inverted-repeat transposable elements
-
doi:10.1371/journal.pone.0000203
-
Piriyapongsa J, Jordan IK, (2007) A family of human microRNA genes from miniature inverted-repeat transposable elements. PLoS ONE 2 (2): e203 doi:10.1371/journal.pone.0000203.
-
(2007)
PLoS ONE
, vol.2
, Issue.2
-
-
Piriyapongsa, J.1
Jordan, I.K.2
-
20
-
-
34250729886
-
Origin and evolution of human microRNAs from transposable elements
-
Piriyapongsa J, Marino-Ramirez L, Jordan IK, (2007) Origin and evolution of human microRNAs from transposable elements. Genetics 176: 1323-1337.
-
(2007)
Genetics
, vol.176
, pp. 1323-1337
-
-
Piriyapongsa, J.1
Marino-Ramirez, L.2
Jordan, I.K.3
-
21
-
-
84887212434
-
Evidence for co-evolution between human microRNAs and Alu-repeats
-
doi:10.1371/journal.pone.0004456
-
Lehnert S, Van Loo P, Thilakarathne PJ, Marynen P, Verbeke G, et al. (2009) Evidence for co-evolution between human microRNAs and Alu-repeats. PLoS ONE 4 (2): e4456 doi:10.1371/journal.pone.0004456.
-
(2009)
PLoS ONE
, vol.4
, Issue.2
-
-
Lehnert, S.1
van Loo, P.2
Thilakarathne, P.J.3
Marynen, P.4
Verbeke, G.5
-
22
-
-
42449099982
-
Dual coding of siRNAs and miRNAs by plant transposable elements
-
Piriyapongsa J, Jordan IK, (2008) Dual coding of siRNAs and miRNAs by plant transposable elements. RNA 14: 814-821.
-
(2008)
RNA
, vol.14
, pp. 814-821
-
-
Piriyapongsa, J.1
Jordan, I.K.2
-
24
-
-
61449173808
-
Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs
-
Kuang HH, Padmanabhan C, Li F, Kamei A, Bhaskar PB, et al. (2009) Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs. Genome Research 19: 42-56.
-
(2009)
Genome Research
, vol.19
, pp. 42-56
-
-
Kuang, H.H.1
Padmanabhan, C.2
Li, F.3
Kamei, A.4
Bhaskar, P.B.5
-
25
-
-
36349035416
-
Cloning of novel repeat-associated small RNAs derived from hairpin precursors in Oryza sativa
-
Yao C, Zhao B, Li W, Li Y, Qin W, et al. (2007) Cloning of novel repeat-associated small RNAs derived from hairpin precursors in Oryza sativa. Acta Biochim Biophys Sin (Shanghai) 39: 829-834.
-
(2007)
Acta Biochim Biophys Sin (Shanghai)
, vol.39
, pp. 829-834
-
-
Yao, C.1
Zhao, B.2
Li, W.3
Li, Y.4
Qin, W.5
-
26
-
-
68149119262
-
Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
-
Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, et al. (2009) Clusters and superclusters of phased small RNAs in the developing inflorescence of rice. Genome Res 19: 1429-1440.
-
(2009)
Genome Res
, vol.19
, pp. 1429-1440
-
-
Johnson, C.1
Kasprzewska, A.2
Tennessen, K.3
Fernandes, J.4
Nan, G.L.5
-
27
-
-
41649102715
-
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
-
Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, et al. (2008) Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Research 18: 571-584.
-
(2008)
Genome Research
, vol.18
, pp. 571-584
-
-
Morin, R.D.1
Aksay, G.2
Dolgosheina, E.3
Ebhardt, H.A.4
Magrini, V.5
-
28
-
-
51449109568
-
Characterization of unique small RNA populations from rice grain
-
Heisel SE, Zhang Y, Allen E, Guo L, Reynolds TL, et al. (2008) Characterization of unique small RNA populations from rice grain. PLoS One 3: e2871.
-
(2008)
PLoS One
, vol.3
-
-
Heisel, S.E.1
Zhang, Y.2
Allen, E.3
Guo, L.4
Reynolds, T.L.5
-
29
-
-
50649110065
-
A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
-
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, et al. (2008) A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains. Genome Res 18: 1456-1465.
-
(2008)
Genome Res
, vol.18
, pp. 1456-1465
-
-
Zhu, Q.H.1
Spriggs, A.2
Matthew, L.3
Fan, L.4
Kennedy, G.5
-
30
-
-
0037224921
-
A biochemical framework for RNA silencing in plants
-
Tang GL, Reinhart BJ, Bartel DP, Zamore PD, (2003) A biochemical framework for RNA silencing in plants. Genes & Development 17: 49-63.
-
(2003)
Genes & Development
, vol.17
, pp. 49-63
-
-
Tang, G.L.1
Reinhart, B.J.2
Bartel, D.P.3
Zamore, P.D.4
-
31
-
-
33947236065
-
Genome-wide profiling and analysis of Arabidopsis siRNAs
-
doi:10.1371/journal.pbio.0050057
-
Kasschau KD, Fahlgren N, Chapman EJ, Sullivan CM, Cumbie JS, et al. (2007) Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol 5 (3): e57 doi:10.1371/journal.pbio.0050057.
-
(2007)
PLoS Biol
, vol.5
, Issue.3
-
-
Kasschau, K.D.1
Fahlgren, N.2
Chapman, E.J.3
Sullivan, C.M.4
Cumbie, J.S.5
-
32
-
-
41349114789
-
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5 ′ terminal nucleotide
-
Mi SJ, Cai T, Hu YG, Chen Y, Hodges E, et al. (2008) Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5 ′ terminal nucleotide. Cell 133: 116-127.
-
(2008)
Cell
, vol.133
, pp. 116-127
-
-
Mi, S.J.1
Cai, T.2
Hu, Y.G.3
Chen, Y.4
Hodges, E.5
-
33
-
-
32944464673
-
Cloning and characterization of micro-RNAs from moss
-
Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, et al. (2005) Cloning and characterization of micro-RNAs from moss. Plant J 43: 837-848.
-
(2005)
Plant J
, vol.43
, pp. 837-848
-
-
Arazi, T.1
Talmor-Neiman, M.2
Stav, R.3
Riese, M.4
Huijser, P.5
-
34
-
-
33745068088
-
Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
-
Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T, (2006) Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss. Plant J 47: 25-37.
-
(2006)
Plant J
, vol.47
, pp. 25-37
-
-
Talmor-Neiman, M.1
Stav, R.2
Frank, W.3
Voss, B.4
Arazi, T.5
-
35
-
-
34547668337
-
Common functions for diverse small RNAs of land plants
-
Axtell MJ, Snyder JA, Bartel DP, (2007) Common functions for diverse small RNAs of land plants. Plant Cell 19: 1750-1769.
-
(2007)
Plant Cell
, vol.19
, pp. 1750-1769
-
-
Axtell, M.J.1
Snyder, J.A.2
Bartel, D.P.3
-
36
-
-
1642366133
-
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
-
Chen X, (2004) A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 303: 2022-2025.
-
(2004)
Science
, vol.303
, pp. 2022-2025
-
-
Chen, X.1
-
37
-
-
45849122499
-
Widespread translational inhibition by plant miRNAs and siRNAs
-
Brodersen P, Sakvarelidze-Achard L, Bruun-Rasmussen M, Dunoyer P, Yamamoto YY, et al. (2008) Widespread translational inhibition by plant miRNAs and siRNAs. Science 320: 1185-1190.
-
(2008)
Science
, vol.320
, pp. 1185-1190
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Bruun-Rasmussen, M.3
Dunoyer, P.4
Yamamoto, Y.Y.5
-
38
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, et al. (2002) Prediction of plant microRNA targets. Cell 110: 513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
Bartel, B.5
-
39
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Jones-Rhoades MW, Bartel DP, (2004) Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 14: 787-799.
-
(2004)
Mol Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
40
-
-
17444430392
-
microRNA-directed phasing during trans-acting siRNA biogenesis in plants
-
Allen E, Xie Z, Gustafson AM, Carrington JC, (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121: 207-221.
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
41
-
-
43449091567
-
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
-
Addo-Quaye C, Eshoo TW, Bartel DP, Axtell MJ, (2008) Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol 18: 758-762.
-
(2008)
Curr Biol
, vol.18
, pp. 758-762
-
-
Addo-Quaye, C.1
Eshoo, T.W.2
Bartel, D.P.3
Axtell, M.J.4
-
42
-
-
49449118943
-
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
-
German MA, Pillay M, Jeong DH, Hetawal A, Luo S, et al. (2008) Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat Biotechnol 26: 941-946.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 941-946
-
-
German, M.A.1
Pillay, M.2
Jeong, D.H.3
Hetawal, A.4
Luo, S.5
-
43
-
-
77952832325
-
Transcriptome-wide identification of microRNA targets in rice
-
Li YF, Zheng Y, Addo-Quaye C, Zhang L, Saini A, et al. (2010) Transcriptome-wide identification of microRNA targets in rice. Plant J 62: 742-759.
-
(2010)
Plant J
, vol.62
, pp. 742-759
-
-
Li, Y.F.1
Zheng, Y.2
Addo-Quaye, C.3
Zhang, L.4
Saini, A.5
-
44
-
-
73249125240
-
Rice MicroRNA effector complexes and targets
-
Wu L, Zhang Q, Zhou H, Ni F, Wu X, et al. (2009) Rice MicroRNA effector complexes and targets. Plant Cell 21: 3421-3435.
-
(2009)
Plant Cell
, vol.21
, pp. 3421-3435
-
-
Wu, L.1
Zhang, Q.2
Zhou, H.3
Ni, F.4
Wu, X.5
-
45
-
-
84960125795
-
Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp
-
Zhou M, Gu L, Li P, Song X, Wei L, et al. (2010) Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica) Frontiers in Biology 5: 67-90.
-
(2010)
Indica) Frontiers in Biology
, vol.5
, pp. 67-90
-
-
Zhou, M.1
Gu, L.2
Li, P.3
Song, X.4
Wei, L.5
-
46
-
-
58049220318
-
CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets
-
Addo-Quaye C, Miller W, Axtell MJ, (2009) CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Bioinformatics 25: 130-131.
-
(2009)
Bioinformatics
, vol.25
, pp. 130-131
-
-
Addo-Quaye, C.1
Miller, W.2
Axtell, M.J.3
-
47
-
-
0033951447
-
Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize
-
Zhang Q, Arbuckle J, Wessler SR, (2000) Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize. Proc Natl Acad Sci U S A 97: 1160-1165.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 1160-1165
-
-
Zhang, Q.1
Arbuckle, J.2
Wessler, S.R.3
-
48
-
-
0033854088
-
Rice transposable elements: a survey of 73,000 sequence-tagged-connectors
-
Mao L, Wood TC, Yu Y, Budiman MA, Tomkins J, et al. (2000) Rice transposable elements: a survey of 73,000 sequence-tagged-connectors. Genome Res 10: 982-990.
-
(2000)
Genome Res
, vol.10
, pp. 982-990
-
-
Mao, L.1
Wood, T.C.2
Yu, Y.3
Budiman, M.A.4
Tomkins, J.5
-
49
-
-
10044244768
-
siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis
-
Liu J, He Y, Amasino R, Chen X, (2004) siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis. Genes Dev 18: 2873-2878.
-
(2004)
Genes Dev
, vol.18
, pp. 2873-2878
-
-
Liu, J.1
He, Y.2
Amasino, R.3
Chen, X.4
-
50
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, (2006) A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 20: 3407-3425.
-
(2006)
Genes Dev
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
Bartel, D.P.4
-
51
-
-
56649102410
-
Evolution of Arabidopsis MIR genes generates novel microRNA classes
-
Vazquez F, Blevins T, Ailhas J, Boller T, Meins F Jr, (2008) Evolution of Arabidopsis MIR genes generates novel microRNA classes. Nucleic Acids Res 36: 6429-6438.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6429-6438
-
-
Vazquez, F.1
Blevins, T.2
Ailhas, J.3
Boller, T.4
Meins Jr, F.5
-
52
-
-
33748577987
-
Alu elements within human mRNAs are probable microRNA targets
-
Smalheiser NR, Torvik VI, (2006) Alu elements within human mRNAs are probable microRNA targets. Trends Genet 22: 532-536.
-
(2006)
Trends Genet
, vol.22
, pp. 532-536
-
-
Smalheiser, N.R.1
Torvik, V.I.2
-
53
-
-
0035115215
-
Contribution of the Tos17 retrotransposon to rice functional genomics
-
Hirochika H, (2001) Contribution of the Tos17 retrotransposon to rice functional genomics. Curr Opin Plant Biol 4: 118-122.
-
(2001)
Curr Opin Plant Biol
, vol.4
, pp. 118-122
-
-
Hirochika, H.1
-
54
-
-
0037426878
-
Mobilization of a transposon in the rice genome
-
Nakazaki T, Okumoto Y, Horibata A, Yamahira S, Teraishi M, et al. (2003) Mobilization of a transposon in the rice genome. Nature 421: 170-172.
-
(2003)
Nature
, vol.421
, pp. 170-172
-
-
Nakazaki, T.1
Okumoto, Y.2
Horibata, A.3
Yamahira, S.4
Teraishi, M.5
-
55
-
-
33845189717
-
Dramatic amplification of a rice transposable element during recent domestication
-
Naito K, Cho E, Yang G, Campbell MA, Yano K, et al. (2006) Dramatic amplification of a rice transposable element during recent domestication. Proc Natl Acad Sci U S A 103: 17620-17625.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 17620-17625
-
-
Naito, K.1
Cho, E.2
Yang, G.3
Campbell, M.A.4
Yano, K.5
-
56
-
-
54249135347
-
A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica
-
Oki N, Yano K, Okumoto Y, Tsukiyama T, Teraishi M, et al. (2008) A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica. Genes Genet Syst 83: 321-329.
-
(2008)
Genes Genet Syst
, vol.83
, pp. 321-329
-
-
Oki, N.1
Yano, K.2
Okumoto, Y.3
Tsukiyama, T.4
Teraishi, M.5
-
57
-
-
33947305594
-
Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay
-
Ni JZ, Grate L, Donohue JP, Preston C, Nobida N, et al. (2007) Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay. Genes Dev 21: 708-718.
-
(2007)
Genes Dev
, vol.21
, pp. 708-718
-
-
Ni, J.Z.1
Grate, L.2
Donohue, J.P.3
Preston, C.4
Nobida, N.5
-
58
-
-
0038701605
-
The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons
-
Lev-Maor G, Sorek R, Shomron N, Ast G, (2003) The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons. Science 300: 1288-1291.
-
(2003)
Science
, vol.300
, pp. 1288-1291
-
-
Lev-Maor, G.1
Sorek, R.2
Shomron, N.3
Ast, G.4
-
59
-
-
33646928347
-
A distal enhancer and an ultraconserved exon are derived from a novel retroposon
-
Bejerano G, Lowe CB, Ahituv N, King B, Siepel A, et al. (2006) A distal enhancer and an ultraconserved exon are derived from a novel retroposon. Nature 441: 87-90.
-
(2006)
Nature
, vol.441
, pp. 87-90
-
-
Bejerano, G.1
Lowe, C.B.2
Ahituv, N.3
King, B.4
Siepel, A.5
-
60
-
-
33644750115
-
miRBase: microRNA sequences, targets and gene nomenclature
-
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ, (2006) miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 34: D140-144.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
61
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
62
-
-
37349039355
-
Computational analysis of small RNA cloning data
-
Berninger P, Gaidatzis D, van Nimwegen E, Zavolan M, (2008) Computational analysis of small RNA cloning data. Methods 44: 13-21.
-
(2008)
Methods
, vol.44
, pp. 13-21
-
-
Berninger, P.1
Gaidatzis, D.2
van Nimwegen, E.3
Zavolan, M.4
-
63
-
-
34249772381
-
Fast Folding and Comparison of Rna Secondary Structures
-
Hofacker IL, Fontana W, Stadler PF, Bonhoeffer LS, Tacker M, et al. (1994) Fast Folding and Comparison of Rna Secondary Structures. Monatshefte Fur Chemie 125: 167-188.
-
(1994)
Monatshefte Fur Chemie
, vol.125
, pp. 167-188
-
-
Hofacker, I.L.1
Fontana, W.2
Stadler, P.F.3
Bonhoeffer, L.S.4
Tacker, M.5
-
64
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M, (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
65
-
-
0037314114
-
RnaViz 2: an improved representation of RNA secondary structure
-
De Rijk P, Wuyts J, De Wachter R, (2003) RnaViz 2: an improved representation of RNA secondary structure. Bioinformatics 19: 299-300.
-
(2003)
Bioinformatics
, vol.19
, pp. 299-300
-
-
de Rijk, P.1
Wuyts, J.2
de Wachter, R.3
|