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Volumn 8, Issue 3, 2011, Pages 538-547

Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus

Author keywords

Callus; Deep sequencing; microRNA; miRNA; rRFs; tRFs

Indexed keywords

MICRORNA; PLANT RNA; TRANSFER RNA;

EID: 79956144553     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.8.3.15199     Document Type: Article
Times cited : (116)

References (78)
  • 1
    • 24644446398 scopus 로고    scopus 로고
    • Ribo-gnome: The big world of small RNAs
    • DOI 10.1126/science.1111444
    • Zamore PD, Haley B. Ribo-gnome: the big world of small RNAs. Science 2005; 309:1519-24. (Pubitemid 41266468)
    • (2005) Science , vol.309 , Issue.5740 , pp. 1519-1524
    • Zamore, P.D.1    Haley, B.2
  • 2
    • 70350227275 scopus 로고    scopus 로고
    • Small RNAs and their roles in plant development
    • Chen X. Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol 2009; 25:21-44.
    • (2009) Annu Rev Cell Dev Biol , vol.25 , pp. 21-44
    • Chen, X.1
  • 4
    • 33845436047 scopus 로고    scopus 로고
    • Large-Scale Sequencing Reveals 21U-RNAs and Additional MicroRNAs and Endogenous siRNAs in C. elegans
    • DOI 10.1016/j.cell.2006.10.040, PII S0092867406014681
    • Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, et al. Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 2006; 127:1193-207. (Pubitemid 44894525)
    • (2006) Cell , vol.127 , Issue.6 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3    Axtell, M.J.4    Lee, W.5    Nusbaum, C.6    Ge, H.7    Bartel, D.P.8
  • 5
    • 58449134534 scopus 로고    scopus 로고
    • Small silencing RNAs: An expanding universe
    • Ghildiyal M, Zamore PD. Small silencing RNAs: an expanding universe. Nat Rev Genet 2009; 10:94-108.
    • (2009) Nat Rev Genet , vol.10 , pp. 94-108
    • Ghildiyal, M.1    Zamore, P.D.2
  • 8
    • 71549169628 scopus 로고    scopus 로고
    • Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
    • Cole C, Sobala A, Lu C, Thatcher SR, Bowman A, Brown JW, et al. Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA 2009; 15:2147-60.
    • (2009) RNA , vol.15 , pp. 2147-2160
    • Cole, C.1    Sobala, A.2    Lu, C.3    Thatcher, S.R.4    Bowman, A.5    Brown, J.W.6
  • 9
    • 72749089855 scopus 로고    scopus 로고
    • A novel class of small RNAs: TRNA-derived RNA fragments (tRFs)
    • Lee YS, Shibata Y, Malhotra A, Dutta A. A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev 2009; 23:2639-49.
    • (2009) Genes Dev , vol.23 , pp. 2639-2649
    • Lee, Y.S.1    Shibata, Y.2    Malhotra, A.3    Dutta, A.4
  • 10
    • 77950202393 scopus 로고    scopus 로고
    • Human tRNA-derived small RNAs in the global regulation of RNA silencing
    • Haussecker D, Huang Y, Lau A, Parameswaran P, Fire AZ, Kay MA. Human tRNA-derived small RNAs in the global regulation of RNA silencing. RNA 2010; 16:673-95.
    • (2010) RNA , vol.16 , pp. 673-695
    • Haussecker, D.1    Huang, Y.2    Lau, A.3    Parameswaran, P.4    Fire, A.Z.5    Kay, M.A.6
  • 13
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant MicroRNAs and their targets, including a stress-induced miRNA
    • DOI 10.1016/j.molcel.2004.05.027, PII S1097276504003284
    • Jones-Rhoades MW, Bartel DP. Computational identification of plant MicroRNAs and their targets, including a stress-induced miRNA. Molecular Cell 2004; 14:787-99. (Pubitemid 38780852)
    • (2004) Molecular Cell , vol.14 , Issue.6 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 14
    • 33745271035 scopus 로고    scopus 로고
    • Functions of microRNAs and related small RNAs in plants
    • Mallory AC, Vaucheret H. Functions of microRNAs and related small RNAs in plants. Nat Genet 2006; 38:31-6.
    • (2006) Nat Genet , vol.38 , pp. 31-36
    • Mallory, A.C.1    Vaucheret, H.2
  • 16
    • 67349287414 scopus 로고    scopus 로고
    • Insights into the mechanism of plant development: Interactions of miRNAs pathway with phytohormone response
    • Liu Q, Chen YQ. Insights into the mechanism of plant development: interactions of miRNAs pathway with phytohormone response. Biochem Biophys Res Commun 2009; 384:1-5.
    • (2009) Biochem Biophys Res Commun , vol.384 , pp. 1-5
    • Liu, Q.1    Chen, Y.Q.2
  • 17
    • 63349083143 scopus 로고    scopus 로고
    • Characterization and expression profiles of miRNAs in rice seeds
    • Xue LJ, Zhang JJ, Xue HW. Characterization and expression profiles of miRNAs in rice seeds. Nucleic Acids Res 2009; 37:916-30.
    • (2009) Nucleic Acids Res , vol.37 , pp. 916-930
    • Xue, L.J.1    Zhang, J.J.2    Xue, H.W.3
  • 19
    • 66149125192 scopus 로고    scopus 로고
    • The phloem-delivered RNA pool contains small noncoding RNAs and interferes with translation
    • Zhang S, Sun L, Kragler F. The phloem-delivered RNA pool contains small noncoding RNAs and interferes with translation. Plant Physiol 2009; 150:378-87.
    • (2009) Plant Physiol , vol.150 , pp. 378-387
    • Zhang, S.1    Sun, L.2    Kragler, F.3
  • 20
    • 76949103466 scopus 로고    scopus 로고
    • High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    • Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, et al. High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera. BMC Genomics 2009; 10:558.
    • (2009) BMC Genomics , vol.10 , pp. 558
    • Mica, E.1    Piccolo, V.2    Delledonne, M.3    Ferrarini, A.4    Pezzotti, M.5    Casati, C.6
  • 21
    • 70350669278 scopus 로고    scopus 로고
    • Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    • Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, et al. Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules. Plant Cell 2009; 21:2780-96.
    • (2009) Plant Cell , vol.21 , pp. 2780-2796
    • Lelandais-Briere, C.1    Naya, L.2    Sallet, E.3    Calenge, F.4    Frugier, F.5    Hartmann, C.6
  • 22
    • 68149119262 scopus 로고    scopus 로고
    • Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    • Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, et al. Clusters and superclusters of phased small RNAs in the developing inflorescence of rice. Genome Res 2009; 19:1429-40.
    • (2009) Genome Res , vol.19 , pp. 1429-1440
    • Johnson, C.1    Kasprzewska, A.2    Tennessen, K.3    Fernandes, J.4    Nan, G.L.5    Walbot, V.6
  • 23
    • 0141533218 scopus 로고    scopus 로고
    • Apical meristems: The plant's fountain of youth
    • DOI 10.1002/bies.10341
    • Baurle I, Laux T. Apical meristems: the plant's fountain of youth. Bioessays 2003; 25:961-70. (Pubitemid 37221520)
    • (2003) BioEssays , vol.25 , Issue.10 , pp. 961-970
    • Baurle, I.1    Laux, T.2
  • 24
    • 33748288105 scopus 로고    scopus 로고
    • Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
    • DOI 10.1016/j.febslet.2006.08.046, PII S0014579306010222
    • Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH. Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development. FEBS Lett 2006; 580:5111-6. (Pubitemid 44332385)
    • (2006) FEBS Letters , vol.580 , Issue.21 , pp. 5111-5116
    • Luo, Y.-C.1    Zhou, H.2    Li, Y.3    Chen, J.-Y.4    Yang, J.-H.5    Chen, Y.-Q.6    Qu, L.-H.7
  • 27
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    • DOI 10.1101/gad.1476406
    • Rajagopalan R, Vaucheret H, Trejo J, Bartel DP. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes & Development 2006; 20:3407-25. (Pubitemid 44969159)
    • (2006) Genes and Development , vol.20 , Issue.24 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 28
    • 33745393624 scopus 로고    scopus 로고
    • Highly specific gene silencing by artificial microRNAs in Arabidopsis
    • DOI 10.1105/tpc.105.039834
    • Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D. Highly specific gene silencing by artificial microRNAs in Arabidopsis. Plant Cell 2006; 18:1121-33. (Pubitemid 43956120)
    • (2006) Plant Cell , vol.18 , Issue.5 , pp. 1121-1133
    • Schwab, R.1    Ossowski, S.2    Riester, M.3    Warthmann, N.4    Weigel, D.5
  • 29
    • 41349114789 scopus 로고    scopus 로고
    • Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5′ terminal nucleotide
    • Mi SJ, Cai T, Hu YG, Chen Y, Hodges E, Ni FR, et al. Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5′ terminal nucleotide. Cell 2008; 133:116-27.
    • (2008) Cell , vol.133 , pp. 116-127
    • Mi, S.J.1    Cai, T.2    Hu, Y.G.3    Chen, Y.4    Hodges, E.5    Ni, F.R.6
  • 31
    • 27744596243 scopus 로고    scopus 로고
    • Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis
    • Wang JW, Wang LJ, Mao YB, Cai WJ, Xue HW, Chen XY. Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Plant Cell 2005; 17:2204-16.
    • (2005) Plant Cell , vol.17 , pp. 2204-2216
    • Wang, J.W.1    Wang, L.J.2    Mao, Y.B.3    Cai, W.J.4    Xue, H.W.5    Chen, X.Y.6
  • 32
    • 24944493388 scopus 로고    scopus 로고
    • MicroRNA-directed regulation of Arabidopsis Auxin Response Factor17 is essential for proper development and modulates expression of early auxin response genes
    • DOI 10.1105/tpc.105.031716
    • Mallory AC, Bartel DP, Bartel B. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell 2005; 17:1360-75. (Pubitemid 43138190)
    • (2005) Plant Cell , vol.17 , Issue.5 , pp. 1360-1375
    • Mallory, A.C.1    Bartel, D.P.2    Bartel, B.3
  • 33
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism and function
    • Bartel DP. MicroRNAs: genomics, biogenesis, mechanism and function. Cell 2004; 116:281-97.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 34
    • 34547115664 scopus 로고    scopus 로고
    • High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes
    • Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, et al. High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS One 2007; 2:219.
    • (2007) PLoS One , vol.2 , pp. 219
    • Fahlgren, N.1    Howell, M.D.2    Kasschau, K.D.3    Chapman, E.J.4    Sullivan, C.M.5    Cumbie, J.S.6
  • 36
    • 2442583436 scopus 로고    scopus 로고
    • Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing
    • DOI 10.1105/tpc.020719
    • Dunoyer P, Lecellier CH, Parizotto EA, Himber C, Voinnet O. Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing. Plant Cell 2004; 16:1235-50. (Pubitemid 38641517)
    • (2004) Plant Cell , vol.16 , Issue.5 , pp. 1235-1250
    • Dunoyer, P.1    Lecellier, C.-H.2    Parizotto, E.A.3    Himber, C.4    Voinnet, O.5
  • 37
    • 73249121905 scopus 로고    scopus 로고
    • Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome
    • Addo-Quaye C, Snyder JA, Park YB, Li YF, Sunkar R, Axtell MJ. Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome. RNA 2009; 15:2112-21.
    • (2009) RNA , vol.15 , pp. 2112-2121
    • Addo-Quaye, C.1    Snyder, J.A.2    Park, Y.B.3    Li, Y.F.4    Sunkar, R.5    Axtell, M.J.6
  • 38
    • 71249155533 scopus 로고    scopus 로고
    • miRNA processing turned upside down
    • Schwab R, Voinnet O. miRNA processing turned upside down. EMBO J 2009; 28:3633-4.
    • (2009) EMBO J , vol.28 , pp. 3633-3634
    • Schwab, R.1    Voinnet, O.2
  • 40
    • 24944443408 scopus 로고    scopus 로고
    • Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes
    • DOI 10.1242/dev.01942
    • Williams L, Grigg SP, Xie M, Christensen S, Fletcher JC. Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes. Development 2005; 132:3657-68. (Pubitemid 41301103)
    • (2005) Development , vol.132 , Issue.16 , pp. 3657-3668
    • Williams, L.1    Grigg, S.P.2    Xie, M.3    Christensen, S.4    Fletcher, J.C.5
  • 42
    • 70449651702 scopus 로고    scopus 로고
    • Stem cells: The root of all cells
    • Terpstra I, Heidstra R. Stem cells: The root of all cells. Semin Cell Dev Biol 2009; 20:1089-96.
    • (2009) Semin Cell Dev Biol , vol.20 , pp. 1089-1096
    • Terpstra, I.1    Heidstra, R.2
  • 43
    • 46449086826 scopus 로고    scopus 로고
    • Extrinsic regulation of cardiomyocyte differentiation of embryonic stem cells
    • Chen K, Wu L, Wang ZZ. Extrinsic regulation of cardiomyocyte differentiation of embryonic stem cells. J Cell Biochem 2008; 104:119-28.
    • (2008) J Cell Biochem , vol.104 , pp. 119-128
    • Chen, K.1    Wu, L.2    Wang, Z.Z.3
  • 45
    • 34250729886 scopus 로고    scopus 로고
    • Origin and evolution of human microRNAs from transposable elements
    • DOI 10.1534/genetics.107.072553
    • Piriyapongsa J, Marino-Ramirez L, Jordan IK. Origin and evolution of human microRNAs from transposable elements. Genetics 2007; 176:1323-37. (Pubitemid 46961124)
    • (2007) Genetics , vol.176 , Issue.2 , pp. 1323-1337
    • Piriyapongsa, J.1    Marino-Ramirez, L.2    Jordan, I.K.3
  • 46
    • 77952368550 scopus 로고    scopus 로고
    • Mammalian microRNAs: Experimental evaluation of novel and previously annotated genes
    • Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, et al. Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes Dev 2010; 24:992-1009.
    • (2010) Genes Dev , vol.24 , pp. 992-1009
    • Chiang, H.R.1    Schoenfeld, L.W.2    Ruby, J.G.3    Auyeung, V.C.4    Spies, N.5    Baek, D.6
  • 48
    • 54349104464 scopus 로고    scopus 로고
    • Mouse ES cells express endogenous shRNAs, siRNAs and other Microprocessor-independent, Dicer-dependent small RNAs
    • Babiarz JE, Ruby JG, Wang YM, Bartel DP, Blelloch R. Mouse ES cells express endogenous shRNAs, siRNAs and other Microprocessor-independent, Dicer-dependent small RNAs. Genes & Development 2008; 22:2773-85.
    • (2008) Genes & Development , vol.22 , pp. 2773-2785
    • Babiarz, J.E.1    Ruby, J.G.2    Wang, Y.M.3    Bartel, D.P.4    Blelloch, R.5
  • 49
    • 29944432120 scopus 로고    scopus 로고
    • Starvation-induced cleavage of the tRNA anticodon loop in Tetrahymena thermophila
    • DOI 10.1074/jbc.M510356200
    • Lee SR, Collins K. Starvation-induced cleavage of the tRNA anticodon loop in Tetrahymena thermophila. J Biol Chem 2005; 280:42744-9. (Pubitemid 43049235)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.52 , pp. 42744-42749
    • Lee, S.R.1    Collins, K.2
  • 50
    • 39449095457 scopus 로고    scopus 로고
    • Developmentally regulated cleavage of tRNAs in the bacterium Streptomyces coelicolor
    • DOI 10.1093/nar/gkm1096
    • Haiser HJ, Karginov FV, Hannon GJ, Elliot MA. Developmentally regulated cleavage of tRNAs in the bacterium Streptomyces coelicolor. Nucleic Acids Res 2008; 36:732-41. (Pubitemid 351267231)
    • (2008) Nucleic Acids Research , vol.36 , Issue.3 , pp. 732-741
    • Haiser, H.J.1    Karginov, F.V.2    Hannon, G.J.3    Elliot, M.A.4
  • 51
    • 43349083066 scopus 로고    scopus 로고
    • Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis
    • Jochl C, Rederstorff M, Hertel J, Stadler PF, Hofacker IL, Schrettl M, et al. Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis. Nucleic Acids Res 2008; 36:2677-89.
    • (2008) Nucleic Acids Res , vol.36 , pp. 2677-2689
    • Jochl, C.1    Rederstorff, M.2    Hertel, J.3    Stadler, P.F.4    Hofacker, I.L.5    Schrettl, M.6
  • 53
    • 56049119367 scopus 로고    scopus 로고
    • Stress-induced tRNA-derived RNAs: A novel class of small RNAs in the primitive eukaryote Giardia lamblia
    • Li Y, Luo J, Zhou H, Liao JY, Ma LM, Chen YQ, Qu LH. Stress-induced tRNA-derived RNAs: a novel class of small RNAs in the primitive eukaryote Giardia lamblia. Nucleic Acids Res 2008; 36:6048-55.
    • (2008) Nucleic Acids Res , vol.36 , pp. 6048-6055
    • Li, Y.1    Luo, J.2    Zhou, H.3    Liao, J.Y.4    Ma, L.M.5    Chen, Y.Q.6    Qu, L.H.7
  • 55
    • 65249152479 scopus 로고    scopus 로고
    • The RNase Rny1p cleaves tRNAs and promotes cell death during oxidative stress in Saccharomyces cerevisiae
    • Thompson DM, Parker R. The RNase Rny1p cleaves tRNAs and promotes cell death during oxidative stress in Saccharomyces cerevisiae. J Cell Biol 2009; 185:43-50.
    • (2009) J Cell Biol , vol.185 , pp. 43-50
    • Thompson, D.M.1    Parker, R.2
  • 56
    • 65249129859 scopus 로고    scopus 로고
    • Angiogenin cleaves tRNA and promotes stress-induced translational repression
    • Yamasaki S, Ivanov P, Hu GF, Anderson P. Angiogenin cleaves tRNA and promotes stress-induced translational repression. J Cell Biol 2009; 185:35-42.
    • (2009) J Cell Biol , vol.185 , pp. 35-42
    • Yamasaki, S.1    Ivanov, P.2    Hu, G.F.3    Anderson, P.4
  • 57
    • 53549105500 scopus 로고    scopus 로고
    • TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the Schizosaccharomyces pombe siRNA pathway
    • Buhler M, Spies N, Bartel DP, Moazed D. TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the Schizosaccharomyces pombe siRNA pathway. Nat Struct Mol Biol 2008; 15:1015-23.
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 1015-1023
    • Buhler, M.1    Spies, N.2    Bartel, D.P.3    Moazed, D.4
  • 58
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE: Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002, 30:207-210. (Pubitemid 34679544)
    • (2002) Nucleic Acids Research , vol.30 , Issue.1 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 60
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009; 10:25.
    • (2009) Genome Biol , vol.10 , pp. 25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 65
    • 10244243802 scopus 로고    scopus 로고
    • Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
    • Bonnet E, Wuyts J, Rouze P, Van de Peer Y. Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 2004; 20:2911-7.
    • (2004) Bioinformatics , vol.20 , pp. 2911-2917
    • Bonnet, E.1    Wuyts, J.2    Rouze, P.3    Van De Peer, Y.4
  • 67
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • DOI 10.1016/j.cell.2005.04.004
    • Allen E, Xie Z, Gustafson AM, Carrington JC. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 2005; 121:207-21. (Pubitemid 40546389)
    • (2005) Cell , vol.121 , Issue.2 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 68
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson WR, Lipman DJ. Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 1988; 85:2444-8.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 69
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie JM. The significance of digital gene expression profiles. Genome Research 1997; 7:986-95. (Pubitemid 27487763)
    • (1997) Genome Research , vol.7 , Issue.10 , pp. 986-995
    • Audic, S.1    Claverie, J.-M.2
  • 70
    • 24044440971 scopus 로고    scopus 로고
    • BiNGO: A Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
    • DOI 10.1093/bioinformatics/bti551
    • Maere S, Heymans K, Kuiper M. BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks. Bioinformatics 2005; 21:3448-9. (Pubitemid 41222459)
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 71
    • 0035834489 scopus 로고    scopus 로고
    • Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles
    • DOI 10.1006/jmbi.2001.5102
    • Gautheret D, Lambert A. Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles. Journal of Molecular Biology 2001; 313:1003-11. (Pubitemid 33081896)
    • (2001) Journal of Molecular Biology , vol.313 , Issue.5 , pp. 1003-1011
    • Gautheret, D.1    Lambert, A.2
  • 72
    • 3142756502 scopus 로고    scopus 로고
    • Open source clustering software
    • DOI 10.1093/bioinformatics/bth078
    • de Hoon MJL, Imoto S, Nolan J, Miyano S. Open source clustering software. Bioinformatics 2004; 20:1453-4. (Pubitemid 38931415)
    • (2004) Bioinformatics , vol.20 , Issue.9 , pp. 1453-1454
    • De Hoon, M.J.L.1    Imoto, S.2    Nolan, J.3    Miyano, S.4
  • 73
    • 9444225935 scopus 로고    scopus 로고
    • Java Treeview - Extensible visualization of microarray data
    • DOI 10.1093/bioinformatics/bth349
    • Saldanha AJ. Java Treeview-extensible visualization of microarray data. Bioinformatics 2004; 20:3246-8. (Pubitemid 39619217)
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3246-3248
    • Saldanha, A.J.1
  • 75
    • 2942571539 scopus 로고    scopus 로고
    • The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron and other RNAs
    • Cannone JJ, Subramanian S, Schnare MN, Collett JR, D'Souza LM, Du Y, et al. The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron and other RNAs. Bmc Bioinformatics 2002; 3:2.
    • (2002) Bmc Bioinformatics , vol.3 , pp. 2
    • Cannone, J.J.1    Subramanian, S.2    Schnare, M.N.3    Collett, J.R.4    D'Souza, L.M.5    Du, Y.6
  • 78
    • 38849140922 scopus 로고    scopus 로고
    • Protocol: A highly sensitive RT-PCR method for detection and quantification of microRNAs
    • Varkonyi-Gasic E, Wu RM, Wood M, Walton EF, Hellens RP. Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Methods 2007; 3.
    • (2007) Plant Methods , vol.3
    • Varkonyi-Gasic, E.1    Wu, R.M.2    Wood, M.3    Walton, E.F.4    Hellens, R.P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.