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Volumn 8, Issue 9, 2012, Pages

Role of Transposon-Derived Small RNAs in the Interplay between Genomes and Parasitic DNA in Rice

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA METHYLTRANSFERASE; GENOMIC DNA; MICRORNA; MICRORNA 820; SMALL INTERFERING RNA; UNCLASSIFIED DRUG;

EID: 84866946845     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1002953     Document Type: Article
Times cited : (75)

References (32)
  • 1
    • 0037123606 scopus 로고    scopus 로고
    • RNA silencing: The genome's immune system
    • Plasterk RHA, (2002) RNA silencing: The genome's immune system. Science 296: 1263-1265.
    • (2002) Science , vol.296 , pp. 1263-1265
    • Plasterk, R.H.A.1
  • 2
    • 18044393885 scopus 로고    scopus 로고
    • RNA silencing and genome regulation
    • Almedia R, Allshire RC, (2005) RNA silencing and genome regulation. Trends Cell Biol 15: 251-258.
    • (2005) Trends Cell Biol , vol.15 , pp. 251-258
    • Almedia, R.1    Allshire, R.C.2
  • 3
    • 36749037521 scopus 로고    scopus 로고
    • The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
    • Aravin AA, Hannon GJ, Brennecke J, (2007) The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race. Science 318: 761-764.
    • (2007) Science , vol.318 , pp. 761-764
    • Aravin, A.A.1    Hannon, G.J.2    Brennecke, J.3
  • 4
    • 78149476037 scopus 로고    scopus 로고
    • Small RNA-mediated quiescence of transposable elements in animals
    • Saito K, Siomi MC, (2010) Small RNA-mediated quiescence of transposable elements in animals. Dev Cell 19: 687-697.
    • (2010) Dev Cell , vol.19 , pp. 687-697
    • Saito, K.1    Siomi, M.C.2
  • 5
    • 19944427670 scopus 로고    scopus 로고
    • Silencing of transposons in plant genomes: kick them when they're down
    • Zilberman D, Henikoff S, (2004) Silencing of transposons in plant genomes: kick them when they're down. Genome Biol 5: 249.1-249.5.
    • (2004) Genome Biol , vol.5 , pp. 1-5
    • Zilberman, D.1    Henikoff, S.2
  • 6
    • 66449124318 scopus 로고    scopus 로고
    • Epigenetic regulation of transposable elements in plants
    • Lisch D, (2009) Epigenetic regulation of transposable elements in plants. Annu Rev Plant Biol 60: 43-66.
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 43-66
    • Lisch, D.1
  • 8
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: where genetics meets genomics
    • Feschotte C, Jiang N, Wessler SR, (2002) Plant transposable elements: where genetics meets genomics. Nature Rev Genet 3: 329-341.
    • (2002) Nature Rev Genet , vol.3 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.R.3
  • 9
    • 0036021699 scopus 로고    scopus 로고
    • Transposable elements and the evolution of genome size in eukaryotes
    • Kidwell MG, (2002) Transposable elements and the evolution of genome size in eukaryotes. Genetica 115: 49-63.
    • (2002) Genetica , vol.115 , pp. 49-63
    • Kidwell, M.G.1
  • 11
    • 60149086351 scopus 로고    scopus 로고
    • Origin, biogenesis, and activity of plant microRNAs
    • Voinnet O, (2009) Origin, biogenesis, and activity of plant microRNAs. Cell 136: 669-687.
    • (2009) Cell , vol.136 , pp. 669-687
    • Voinnet, O.1
  • 12
    • 78650514497 scopus 로고    scopus 로고
    • siRNAs from miRNA sites mediate DNA methylation of target genes
    • Chellappan P, Xia J, Zhou X, Gao S, Zhang X, et al. (2010) siRNAs from miRNA sites mediate DNA methylation of target genes. Nucleic Acids Res 38: 6883-6894.
    • (2010) Nucleic Acids Res , vol.38 , pp. 6883-6894
    • Chellappan, P.1    Xia, J.2    Zhou, X.3    Gao, S.4    Zhang, X.5
  • 13
    • 77951974552 scopus 로고    scopus 로고
    • DNA methylation mediated by a microRNA pathway
    • Wu L, Zhou H, Zhang Q, Zhang J, Ni F, et al. (2010) DNA methylation mediated by a microRNA pathway. Mol Cell 38: 465-475.
    • (2010) Mol Cell , vol.38 , pp. 465-475
    • Wu, L.1    Zhou, H.2    Zhang, Q.3    Zhang, J.4    Ni, F.5
  • 14
    • 38549136871 scopus 로고    scopus 로고
    • The rice annotation project database (RAP-DB): 2008 update
    • Rice Annotation Project
    • Rice Annotation Project (2008) The rice annotation project database (RAP-DB): 2008 update. Nucleic Acids Res 36: D1028-D1033.
    • (2008) Nucleic Acids Res , vol.36
  • 15
    • 33748288105 scopus 로고    scopus 로고
    • Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
    • Luo YC, Zhou H, Li Y, Chen JY, Yang JH, et al. (2006) Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development. FEBS Lett 580: 5111-5116.
    • (2006) FEBS Lett , vol.580 , pp. 5111-5116
    • Luo, Y.C.1    Zhou, H.2    Li, Y.3    Chen, J.Y.4    Yang, J.H.5
  • 17
    • 0037046810 scopus 로고    scopus 로고
    • Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
    • Cao X, Jacobsen SE, (2002) Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol 12: 1138-1144.
    • (2002) Curr Biol , vol.12 , pp. 1138-1144
    • Cao, X.1    Jacobsen, S.E.2
  • 18
    • 70349957990 scopus 로고    scopus 로고
    • Rice cytosine DNA methyltransferases - gene expression profiling during reproductive development and abiotic stress
    • Sharma R, Singh RKM, Malik G, Deveshwar P, Tyagi AK, et al. (2009) Rice cytosine DNA methyltransferases - gene expression profiling during reproductive development and abiotic stress. FEBS J 276: 6301-6311.
    • (2009) FEBS J , vol.276 , pp. 6301-6311
    • Sharma, R.1    Singh, R.K.M.2    Malik, G.3    Deveshwar, P.4    Tyagi, A.K.5
  • 19
    • 78449231939 scopus 로고    scopus 로고
    • The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana
    • Henderson IR, Deleris A, Wong W, Zhong X, Chin HG, et al. (2010) The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet 6: e1001182 doi:10.1371/journal.pgen.1001182.
    • (2010) PLoS Genet , vol.6
    • Henderson, I.R.1    Deleris, A.2    Wong, W.3    Zhong, X.4    Chin, H.G.5
  • 20
    • 78249279641 scopus 로고    scopus 로고
    • WAVY LEAF 1, an ortholog of Arabidopsis HEN1, regulates shoot development through maintaining microRNA and trans-acting siRNA accumulation in rice
    • Abe M, Yoshikawa T, Nosaka M, Sakakibara H, Sato Y, et al. (2010) WAVY LEAF 1, an ortholog of Arabidopsis HEN1, regulates shoot development through maintaining microRNA and trans-acting siRNA accumulation in rice. Plant Physiol 154: 1335-1346.
    • (2010) Plant Physiol , vol.154 , pp. 1335-1346
    • Abe, M.1    Yoshikawa, T.2    Nosaka, M.3    Sakakibara, H.4    Sato, Y.5
  • 21
    • 23944493378 scopus 로고    scopus 로고
    • Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabidopsis
    • Li J, Yang Z, Yu B, Liu J, Chen X, (2005) Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabidopsis. Curr Biol 15: 1501-1507.
    • (2005) Curr Biol , vol.15 , pp. 1501-1507
    • Li, J.1    Yang, Z.2    Yu, B.3    Liu, J.4    Chen, X.5
  • 22
    • 13644256193 scopus 로고    scopus 로고
    • Methylation as a crucial step in plant microRNA biogenesis
    • Yu B, Yang Z, Li J, Minakhina S, Yang M, et al. (2005) Methylation as a crucial step in plant microRNA biogenesis. Science 307: 932-935.
    • (2005) Science , vol.307 , pp. 932-935
    • Yu, B.1    Yang, Z.2    Li, J.3    Minakhina, S.4    Yang, M.5
  • 23
    • 32644454064 scopus 로고    scopus 로고
    • HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2′ OH of the 3′ terminal nucleotide
    • Yang Z, Ebright YW, Yu B, Chen X, (2006) HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2′ OH of the 3′ terminal nucleotide. Nucleic Acids Res 34: 667-675.
    • (2006) Nucleic Acids Res , vol.34 , pp. 667-675
    • Yang, Z.1    Ebright, Y.W.2    Yu, B.3    Chen, X.4
  • 24
    • 0033452726 scopus 로고    scopus 로고
    • Phylogeny of rice genomes with emphasis on origins of allotetraploid species
    • Ge S, Sang T, Lu BR, Hong DY, (1999) Phylogeny of rice genomes with emphasis on origins of allotetraploid species. Proc Natl Acad Sci U S A 96: 14400-14405.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 14400-14405
    • Ge, S.1    Sang, T.2    Lu, B.R.3    Hong, D.Y.4
  • 25
    • 0035859046 scopus 로고    scopus 로고
    • Gene silencing as an adaptive defence against viruses
    • Waterhouse PM, Wang MB, Lough T, (2001) Gene silencing as an adaptive defence against viruses. Nature 411: 834-842.
    • (2001) Nature , vol.411 , pp. 834-842
    • Waterhouse, P.M.1    Wang, M.B.2    Lough, T.3
  • 26
    • 34548588693 scopus 로고    scopus 로고
    • Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type)
    • Kim HR, Miguel PS, Nelson W, Collura K, Wissotski M, et al. (2007) Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type). Genetics 176: 379-390.
    • (2007) Genetics , vol.176 , pp. 379-390
    • Kim, H.R.1    Miguel, P.S.2    Nelson, W.3    Collura, K.4    Wissotski, M.5
  • 27
    • 70349276670 scopus 로고    scopus 로고
    • Bursts of retrotransposition reproduced in Arabidopsis
    • Tsukahara S, Kobayashi A, Kawabe A, Mathieu O, Miura A, et al. (2009) Bursts of retrotransposition reproduced in Arabidopsis. Nature 461: 423-426.
    • (2009) Nature , vol.461 , pp. 423-426
    • Tsukahara, S.1    Kobayashi, A.2    Kawabe, A.3    Mathieu, O.4    Miura, A.5
  • 28
    • 36148954289 scopus 로고    scopus 로고
    • Improved gateway binary vectors: High-performance vectors for creation of fusion constructs in transgenic analysis of plants
    • Nakagawa T, Suzuki T, Murata S, Nakamura S, Hino T, et al. (2007) Improved gateway binary vectors: High-performance vectors for creation of fusion constructs in transgenic analysis of plants. Biosci Biotech Biochem 71: 2095-2100.
    • (2007) Biosci Biotech Biochem , vol.71 , pp. 2095-2100
    • Nakagawa, T.1    Suzuki, T.2    Murata, S.3    Nakamura, S.4    Hino, T.5
  • 29
    • 0028483231 scopus 로고
    • Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA
    • Hiei Y, Ohta S, Komari T, Kumashiro T, (1994) Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. Plant J 6: 271-282.
    • (1994) Plant J , vol.6 , pp. 271-282
    • Hiei, Y.1    Ohta, S.2    Komari, T.3    Kumashiro, T.4
  • 30
    • 17444430392 scopus 로고    scopus 로고
    • microRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • Allen E, Xie Z, Gustafson AM, Carrington JC, (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121: 207-221.
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 31
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M, (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 32
    • 0027232818 scopus 로고
    • Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development
    • Kouchi H, Hata S, (1993) Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development. Mol Gen Genet 238: 106-119.
    • (1993) Mol Gen Genet , vol.238 , pp. 106-119
    • Kouchi, H.1    Hata, S.2


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