The Neurospora photoreceptor VIVID exerts negative and positive control on light sensing to achieve adaptation

Molecular Systems Biology

Volumn 9, Issue , 2013, Pages

  Gin, Elan ^a,b   Diernfellner, Axel C R ^b   Brunner, Michael ^b   Höfer, Thomas ^a,b  

^a GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

^b UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

adaptation; mathematical model; Neurospora; protein protein interaction; VVD

Indexed keywords

PROTEIN; PROTEIN VVD; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; WHITE COLLAR COMPLEX; VIVID PROTEIN; FUNGAL PROTEIN; VISUAL PROTEINS AND PIGMENTS; VVD PROTEIN, NEUROSPORA CRASSA;

ARTICLE; CIRCADIAN RHYTHM; GENE EXPRESSION; LIGHT ADAPTATION; LIGHT INTENSITY; MATHEMATICAL MODEL; MOLECULAR MECHANICS; NEUROSPORA CRASSA; NONHUMAN; PHOTOACCLIMATIZATION; PHOTORECEPTOR; PHOTOSYNTHESIS; PRIORITY JOURNAL; CONTROLLED STUDY; FEEDBACK SYSTEM; GENE EXPRESSION REGULATION; LIGHT; MOONLIGHT; NEUROSPORA; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; QUANTITATIVE STUDY; REGULATORY MECHANISM; SIGNAL TRANSDUCTION; SUNLIGHT; ADAPTATION; BIOLOGICAL MODEL; COMPUTER SIMULATION; GENETICS; METABOLISM; RADIATION EXPOSURE;

NEUROSPORA;

ADAPTATION, PHYSIOLOGICAL; CIRCADIAN CLOCKS; CIRCADIAN RHYTHM; COMPUTER SIMULATION; FEEDBACK, PHYSIOLOGICAL; FUNGAL PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; LIGHT; MODELS, GENETIC; NEUROSPORA CRASSA; PHOTORECEPTORS, MICROBIAL; TRANSCRIPTION FACTORS;

EID: 84878664107     PISSN: None     EISSN: 17444292     Source Type: Journal    
DOI: 10.1038/msb.2013.24     Document Type: Article

References (51)

1. Akman OE, Locke JC, Tang S, Carré I, Millar AJ, Rand DA (2008) Isoform switching facilitates period control in the Neurospora crassa circadian clock. Mol Syst Biol 4: 164
2. Akman OE, Rand DA, Brown PE, Millar AJ (2010) Robustness from flexibility in the fungal circadian clock. BMC Syst Biol 4: 1-17
3. Arpaia G, Cerri F, Baima S, Macino G (1999) Involvement of protein kinase C in the response of Neurospora crassa to blue light. Mol Gen Genet 262: 314-322 (Pubitemid 29440767)
4. Baker CL, Loros JJ, Dunlap JC (2012) The circadian clock of Neurospora crassa. FEMS Microbiol Rev 36: 95-110
5. Behar M, Hao N, Dohlman HG, Elston TC (2007) Mathematical and computational analysis of adaptation via feedback inhibition in signal transduction pathways. Biophys J 93: 806-821 (Pubitemid 47219774)
6. Boothby M (2009) The calculus of integrating differentiation: timing control of T-bet. Immunity 30: 666-668
7. Brunner M, Ka'ldi K (2008) Interlocked feedback loops of the circadian clock of Neurospora crassa. Mol Microbiol 68: 255-262 (Pubitemid 351422954)
8. Cha J, Chang S, Huang G, Cheng P, Liu Y (2008) Control of WHITE COLLAR localization by phosphorylation is a critical step in the circadian negative feedback process. EMBO J 27: 3246-3255
9. Chen C, DeMay BS, Gladfelter AS, Dunlap JC, Loros JJ (2010) Physical interaction between VIVID and White Collar complex regulates photoadaptation in Neurospora. Proc Natl Acad Sci USA 107: 16715-16720
10. Diernfellner A, Schafmeier T (2011) Phosphorylations: making the Neurospora crassa circadian clock tick. FEBS Lett 585: 1461-1466
11. Diernfellner AC, Querfurth C, Salazar C, Ho?fer T, Brunner M (2009) Phosphorylation modulates rapid nucleocytoplasmic shuttling and cytoplasmic accumulation of Neurospora clock protein FRQ on a circadian time scale. Genes Dev 23: 2192-2200
12. Elvin M, Loros JJ, Dunlap JC, Heintzen C (2005) The PAS/LOV protein VIVID supports a rapidly dampened daytime oscillator that facilitates entrainment of the Neurospora circadian clock. Genes Dev 19: 2593-2605 (Pubitemid 41565979)
13. Fain GL, Matthews HR, Cornwall MC, Koutalos Y (2001) Adaptation in vertebrate photoreceptors. Physiol Rev 81: 117-151 (Pubitemid 32096175)
14. Froehlich AC, Liu Y, Loros JJ, Dunlap JC (2002) White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter. Science 297: 815-819 (Pubitemid 34839627)
15. Froehlich AC, Loros JJ, Dunlap JC (2003) Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY. Proc Natl Acad Sci USA 100: 5914-5919 (Pubitemid 36576907)
16. Gonze D, Leloup J-C, Goldbeter A (2000) Theoretical models for circadian rhythms in Neurospora and Drosophila. Life Sci 323: 57-67 (Pubitemid 30128746)
17. Guo H, Kottke T, Hegemann P, Dick B (2005) The phot LOV2 domain and its interaction with LOV1. Biophys J 89: 402-412 (Pubitemid 41098295)
18. He Q, Liu Y (2005) Molecular mechanism of light responses in Neurospora: from light-induced transcription to photoadaptation. Genes Dev 19: 2888-2899 (Pubitemid 41739973)
19. He Q, Shu H, Cheng P, Chen S, Wang L, Liu Y (2005) Light-independent phosphorylation of WHITE COLLAR-1 regulates its function in the Neurospora circadian negative feedback loop. J Biol Chem 280: 17526-17532 (Pubitemid 41389226)
20. Heintzen C, Loros JJ, Dunlap JC (2001) The PAS protein VIVID defines a clock-associated feedback loop that represses light input, modulates gating, and regulates clock resetting. Cell 104: 453-464 (Pubitemid 32206465)
21. Houser JR, Ford E, Nagiec MJ, Errede B, Elston TC (2012) Positive roles for negative regulators in the mating response of yeast. Mol Syst Biol 8: 586
22. Hunt SM, Elvin M, Crosthwaite SK, Heintzen C (2007) The PAS/LOV protein VIVID controls temperature compensation of circadian clock phase and development in Neurospora crassa. Genes Dev 21: 1964-1974 (Pubitemid 47204934)
23. Hunt SM, Thompson S, Elvin M, Heintzen C (2010) VIVD interacts with the WHITE COLLAR complex and FREQUENCY-interacting RNA helicase to alter light and clock responses in Neurospora. Proc Natl Acad Sci USA 107: 16709-16714
24. Ka'ldi K, Gonza'lez BH, Brunner M (2006) Transcriptional regulation of the Neurospora circadian clock gene wc-1 affects the phase of circadian output. EMBO Rep 7: 199-204
25. Knox BE, Devreotes PN, Goldbeter A, Segel LA (1986) A molecular mechanism for sensory adaptation based on ligand-induced receptor modification. Proc Natl Acad Sci USA 83: 2345-2349 (Pubitemid 16026883)
26. Kronauer RE, Forger DB, Jewett ME (1999) Quantifying human circadian pacemaker response to brief, extended, and repeated light stimuli over the phototopic range. J Biol Rhythms 14: 501-515
27. Leloup J, Goldbeter A (2000) Modeling the molecular regulatory mechanism of circadian rhythms in Drosophila. BioEssays 22: 84-93 (Pubitemid 30057137)
28. Leloup J, Gonze D, Goldbeter A (1999) Limit cycle models for circadian rhythms based on transcriptional regulation in Drosophila and Neurospora. J Biol Rhythms 14: 433-448 (Pubitemid 30086851)
29. Ma W, Trusina A, El-Samad H, Lim WA, Tang C (2009) Defining network topologies that can achieve biochemical adaptation. Cell 138: 760-773
30. Malzahn E, Ciprianidis S, Ka'ldi K, Schafmeier T, Brunner M (2010) Photoadaptation in Neursopora by competitive interaction of activating and inhibitory LOV domains. Cell 142: 762-772
31. Merrow M, Franchi L, Dragovic Z, Go?rl M, Johnson J, Brunner M, Macino G, Roenneberg T (2001) Circadian regulation of the light input pathway in Neurospora crassa. EMBO J 20: 307-315 (Pubitemid 32126967)
32. Muzzey D, Go'mez-Uribe CA, Mettetal JT, van Oudenaarden A (2009) A systems-level analysis of perfect adaptation in yeast osmoregulation. Cell 138: 160-171
33. Nelson DE, Takahashi JS (1999) Integration and saturation within the circadian photic entrainment pathway of hamsters. Am J Physiol 277: R1351-R1361
34. Querfurth C, Diernfellner A, Gin E, Malzahn E, Hoefer T, Brunner M (2011) Circadian conformational change of the Neurospora clock protein FREQUENCY triggered by clustered hyperphosphorylation of a basic domain. Mol Cell 43: 713-722
35. RimmerDW, Boivin DB, Shanahan TL, Kronauer RE, Duffy JF, Czeisler CA (2000) Dynamic resetting of the human circadian pacemaker by intermittent bright light. Am J Physiol Regul Integr Comp Physiol 279: R1574-R1579
36. Schafmeier T, Diernfellner A (2011) Light input and processing in the circadian clock of Neurospora. FEBS Lett 585: 1467-1473
37. Schafmeier T, Diernfellner A, Scha?fer A, Dintsis O, Neiss A, Brunner M (2008) Circadian activity and abundance rhythms of the Neurospora clock transcription factor WCC associated with rapid nucleo-cytoplasmic shuttling. Genes Dev 22: 3397-3402
38. Schafmeier T, Haase A, Ka'ldi K, Scholz J, Fuchs M, Brunner M (2005) Transcriptional Feedback of Neurospora Circadian Clock Gene by phosphorylation-dependent Inactivation of Its Transcription Factor. Cell 122: 235-246 (Pubitemid 41032987)
39. Schafmeier T, Ka'ldi K, Diernfellner A, Mohr C, Brunner M (2006) Phosphorylation-dependent maturation of Neurospora circadian clock protein from a nuclear repressor towards a cytoplasmic activator. Genes Dev 20: 297-306 (Pubitemid 43200284)
40. Shrode LB, Lewis ZA, White LD, Bell-Pedersen D, Ebbole DJ (2001) vvd is required for light adaptation of conidiation-specific genes of Neurospora crassa, but not circadian conidiation. Fungal Genet Biol 32: 169-181 (Pubitemid 34229822)
41. Schwerdtfeger C, Linden H (2003) VIVID is a flavoprotein and serves as a fungal blue light receptor for photoadaptation.EMBOJ 22: 4846-4855 (Pubitemid 37162920)
42. Schwerdtfeger C, Linden H (2001) Blue light adaptation and desensitization of light signal transduction in Neurospora crassa. Mol Microbiol 39: 1080-1087 (Pubitemid 32176350)
43. Talora C, Franchi L, Linden H, Ballario P, Macino G (1999) Role of a white collar-1-white collar-2 complex in blue-light signal transduction. EMBO J 18: 4961-4968 (Pubitemid 29443798)
44. Tang Y, Othmer HG (1994) A G protein-based model of adaptation in Dictyostelium discoideum. Math Biosci 120: 25-76 (Pubitemid 24160753)
45. Thommen Q, Pfeuty B, Morant PE, Corellou F, Bouget FY, Lefranc M (2010) Robustness of circadian clocks to daylight fluctuations: hints from the picoeucaryote Ostreococcus tauri. PLoS Comput Biol 6: e1000990
46. Tseng Y-Y, Hunt SM, Heintzen C, Crosthwaite SK, Schwartz J-M (2012) Comprehensive modelling of the Neurospora circadian clock and its temperature compensation. PLoS Comput Biol 8: 1-13
47. Tsumoto K, Kurosawa G, Yoshinaga T, Aihara K (2011) Modeling light adaptation in circadian clock: prediction of the response that stabilizes entrainment. PLoS One 6: e20880
48. Vaidya AT, Chen C, Dunlap JC, Loros JJ, Crane BR (2011) Structure of a light-activated LOV protein dimer that regulates transcription. Sci Signal 4: ra50
49. Yi TM, Huang Y, Simon MI, Doyle J (2000) Robust perfect adaptation in bacterial chemotaxis through integral feedback control. Proc Natl Acad Sci USA 97: 4649-4653 (Pubitemid 30238612)
50. Zoltowski B, Crane B (2008) Light activation of the LOV protein Vivid generates a rapidly exchanging dimer. Biochemistry 47: 7012-7019 (Pubitemid 351956350)
51. Zoltowski B, Vaccaro B, Crane B (2009) Mechanism-based tuning of a LOV domain photoreceptor. Nat Chem Biol 5: 827-834