-
1
-
-
0037435618
-
The LOV domain family: Photoresponsive signaling modules coupled to diverse output domains
-
Crosson, S., Rajagopal, S. & Moffat, K. The LOV domain family: photoresponsive signaling modules coupled to diverse output domains. Biochemistry 42, 2-10 (2003).
-
(2003)
Biochemistry
, vol.42
, pp. 2-10
-
-
Crosson, S.1
Rajagopal, S.2
Moffat, K.3
-
2
-
-
34250183058
-
Phototropin blue-light receptors
-
Christie, J.M. Phototropin blue-light receptors. Annu. Rev. Plant Biol. 58, 21-45 (2007).
-
(2007)
Annu. Rev. Plant Biol.
, vol.58
, pp. 21-45
-
-
Christie, J.M.1
-
3
-
-
0036224807
-
First evidence for phototropin-related blue-light receptors in prokaryotes
-
Losi, A., Polverini, E., Quest, B. & Gartner, W. First evidence for phototropin-related blue-light receptors in prokaryotes. Biophys. J. 82, 2627-2634 (2002).
-
(2002)
Biophys. J.
, vol.82
, pp. 2627-2634
-
-
Losi, A.1
Polverini, E.2
Quest, B.3
Gartner, W.4
-
4
-
-
36749016807
-
A photosensory two-component system regulates bacterial cell attachment
-
Purcell, E.B., Siegal-Gaskins, D., Rawling, D.C., Fiebig, A. & Crosson, S. A photosensory two-component system regulates bacterial cell attachment. Proc. Natl. Acad. Sci. USA 104, 18241-18246 (2007).
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 18241-18246
-
-
Purcell, E.B.1
Siegal-Gaskins, D.2
Rawling, D.C.3
Fiebig, A.4
Crosson, S.5
-
5
-
-
29144497204
-
PAS/LOV domain protein of Hypocrea jecorina (anamorph Trichoderma reesei)
-
Schmoll, M., Franchi, L., Kubicek, C.P. & Envoy, A. PAS/LOV domain protein of Hypocrea jecorina (anamorph Trichoderma reesei), modulates cellulase gene transcription in response to light. Eukaryot. Cell 4, 1998-2007 (2005).
-
(2005)
Eukaryot. Cell
, vol.4
, pp. 1998-2007
-
-
Schmoll, M.1
Franchi, L.2
Kubicek, C.P.3
Envoy, A.4
-
6
-
-
0141848660
-
VIVID is a flavoprotein and serves as a fungal blue light photoreceptor for photoadaptation
-
Schwerdtfeger, C. & Linden, H. VIVID is a flavoprotein and serves as a fungal blue light photoreceptor for photoadaptation. EMBO J. 22, 4846-4855 (2003).
-
(2003)
EMBO J.
, vol.22
, pp. 4846-4855
-
-
Schwerdtfeger, C.1
Linden, H.2
-
7
-
-
34548278927
-
Blue-light-activated histidine kinases: Two component sensors in bacteria
-
Swartz, T.E. et al. Blue-light-activated histidine kinases: two component sensors in bacteria. Science 317, 1090-1093 (2007).
-
(2007)
Science
, vol.317
, pp. 1090-1093
-
-
Swartz, T.E.1
-
8
-
-
34249080375
-
Conformational switching in the fungal light sensor vivid
-
Zoltowski, B.D. et al. Conformational switching in the fungal light sensor vivid. Science 316, 1054-1057 (2007).
-
(2007)
Science
, vol.316
, pp. 1054-1057
-
-
Zoltowski, B.D.1
-
9
-
-
0037008528
-
White Collar-1 a circadian blue light photoreceptor, binding to the frequency promoter
-
Froehlich, A., Liu, Y., Loros, J.J. & Dunlap, J.C. White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter. Science 297, 815-819 (2002).
-
(2002)
Science
, vol.297
, pp. 815-819
-
-
Froehlich, A.1
Liu, Y.2
Loros, J.J.3
Dunlap, J.C.4
-
10
-
-
34548546911
-
Structural basis for light-dependent signalling in the dimeric LOV domain of the photosensor YtvA
-
Moglich, A. & Moffat, K. Structural basis for light-dependent signalling in the dimeric LOV domain of the photosensor YtvA. J. Mol. Biol. 373, 112-126 (2007).
-
(2007)
J. Mol. Biol.
, vol.373
, pp. 112-126
-
-
Moglich, A.1
Moffat, K.2
-
11
-
-
38549165150
-
A blue light inducible two-component signal transduction system in the plant pathogen Pseudomonas syringae pv. tomato
-
Cao, Z., Buttani, V., Losi, A. & Gartner, W. A blue light inducible two-component signal transduction system in the plant pathogen Pseudomonas syringae pv. tomato. Biophys. J. 94, 897-905 (2008).
-
(2008)
Biophys. J.
, vol.94
, pp. 897-905
-
-
Cao, Z.1
Buttani, V.2
Losi, A.3
Gartner, W.4
-
12
-
-
33748513878
-
Photoreaction cycle of the light, oxygen and voltage domain in FKF1 determined by low-temperature absorption spectroscopy
-
Zikihara, K. et al. Photoreaction cycle of the light, oxygen and voltage domain in FKF1 determined by low-temperature absorption spectroscopy. Biochemistry 45, 10828-10837 (2006).
-
(2006)
Biochemistry
, vol.45
, pp. 10828-10837
-
-
Zikihara, K.1
-
13
-
-
46849107098
-
Light activation of the LOV protein VVD generates a rapidly exchanging dimer
-
Zoltowski, B.D. & Crane, B.R. Light activation of the LOV protein VVD generates a rapidly exchanging dimer. Biochemistry 47, 7012-7019 (2008).
-
(2008)
Biochemistry
, vol.47
, pp. 7012-7019
-
-
Zoltowski, B.D.1
Crane, B.R.2
-
14
-
-
47849125383
-
Structural basis of the LOV1 dimerization of Arabidopsis phototropins 1 and 2
-
Nakasako, M., Kazunori, Z., Matsuoka, D., Katsura, H. & Tokutomi, S. Structural basis of the LOV1 dimerization of Arabidopsis phototropins 1 and 2. J. Mol. Biol. 381, 718-733 (2008).
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 718-733
-
-
Nakasako, M.1
Kazunori, Z.2
Matsuoka, D.3
Katsura, H.4
Tokutomi, S.5
-
15
-
-
53149153847
-
Stability of dimer and domain-domain interaction of Arabidopsis phototropin 1 LOV2
-
Nakasone, Y. et al. Stability of dimer and domain-domain interaction of Arabidopsis phototropin 1 LOV2. J. Mol. Biol. 383, 904-913 (2008).
-
(2008)
J. Mol. Biol.
, vol.383
, pp. 904-913
-
-
Nakasone, Y.1
-
16
-
-
0037428497
-
Intramolecular proton transfers and structural changes during the photocycle of the LOV2 domain of phototropin 1
-
Corchnoy, S.B. et al. Intramolecular proton transfers and structural changes during the photocycle of the LOV2 domain of phototropin 1. J. Biol. Chem. 278, 724-731 (2003).
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 724-731
-
-
Corchnoy, S.B.1
-
17
-
-
0345268673
-
Primary reactions of the LOV2 domain of photoropin, a plant blue-light photoreceptor
-
Kennis, J.T.M. et al. Primary reactions of the LOV2 domain of photoropin, a plant blue-light photoreceptor. Biochemistry 42, 3385-3392 (2003).
-
(2003)
Biochemistry
, vol.42
, pp. 3385-3392
-
-
Kennis, J.T.M.1
-
18
-
-
0035965307
-
The photocycle of a flavin-binding domain of the blue light photoreceptor phototropin
-
Swartz, T.E. et al. The photocycle of a flavin-binding domain of the blue light photoreceptor phototropin. J. Biol. Chem. 276, 36493-36500 (2001).
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 36493-36500
-
-
Swartz, T.E.1
-
19
-
-
0037306223
-
Phot-LOV1: Photocycle of a blue-light receptor domain from the green alga Chlamydomonas reinhardtii
-
Kottke, T., Heberle, J., Hehn, D., Dick, B. & Hegemann, P. Phot-LOV1: photocycle of a blue-light receptor domain from the green alga Chlamydomonas reinhardtii. Biophys. J. 84, 1192-1201 (2003).
-
(2003)
Biophys. J.
, vol.84
, pp. 1192-1201
-
-
Kottke, T.1
Heberle, J.2
Hehn, D.3
Dick, B.4
Hegemann, P.5
-
20
-
-
33947377466
-
Mechanism for dark state recovery in the Avena sativa phototropin-1 LOV2 domain
-
Alexandre, M.T.A. et al. Mechanism for dark state recovery in the Avena sativa phototropin-1 LOV2 domain. Biochemistry 46, 3129-3137 (2007).
-
(2007)
Biochemistry
, vol.46
, pp. 3129-3137
-
-
Alexandre, M.T.A.1
-
21
-
-
34547867804
-
Steric interactions stabilize the signaling state of the LOV2 domain of phototropin 1
-
Christie, J.M. et al. Steric interactions stabilize the signaling state of the LOV2 domain of phototropin 1. Biochemistry 46, 9310-9319 (2007).
-
(2007)
Biochemistry
, vol.46
, pp. 9310-9319
-
-
Christie, J.M.1
-
22
-
-
27644467009
-
The PAS/LOV protein VVD supports a rapidly dampened daytime oscillator that facilitates entrainment of the Neurospora circadian clock
-
Elvin, M., Loros, J.J., Dunlap, J.C. & Heintzen, C. The PAS/LOV protein VVD supports a rapidly dampened daytime oscillator that facilitates entrainment of the Neurospora circadian clock. Genes Dev. 19, 2593-2605 (2005).
-
(2005)
Genes Dev
, vol.19
, pp. 2593-2605
-
-
Elvin, M.1
Loros, J.J.2
Dunlap, J.C.3
Heintzen, C.4
-
23
-
-
0035830504
-
Protein VIVID defines a Clockassociated feedback loop that represses light input, modulates gating, and regulates clock resetting
-
Heintzen, C., Loros, J.J., Dunlap, J.C. & The, P.A.S. Protein VIVID defines a Clockassociated feedback loop that represses light input, modulates gating, and regulates Clock resetting. Cell 104, 453-464 (2001).
-
(2001)
Cell
, vol.104
, pp. 453-464
-
-
Heintzen, C.1
Loros, J.J.2
Dunlap, J.C.3
The, P.A.S.4
-
24
-
-
0035569803
-
Vvd is required for light adaptation of conidiation-specific genes of Neurospora crassa, but not circadian conidiation
-
Shrode, L.B., Lewis, Z.A., White, L.D., Bell-Pedersen, D. & Ebbole, D.J. vvd is required for light adaptation of conidiation-specific genes of Neurospora crassa, but not circadian conidiation. Fungal Genet. Biol. 32, 169-181 (2001).
-
(2001)
Fungal Genet. Biol.
, vol.32
, pp. 169-181
-
-
Shrode, L.B.1
Lewis, Z.A.2
White, L.D.3
Bell-Pedersen, D.4
Ebbole, D.J.5
-
25
-
-
1142304289
-
Listening to the blue: The time resolved thermodynamics of the bacterial blue-light receptor YtvA and its isolated LOV domain
-
Losi, A., Quest, B. & Gartner, W. Listening to the blue: the time resolved thermodynamics of the bacterial blue-light receptor YtvA and its isolated LOV domain. Photochem. Photobiol. Sci. 2, 759-766 (2003).
-
(2003)
Photochem. Photobiol. Sci.
, vol.2
, pp. 759-766
-
-
Losi, A.1
Quest, B.2
Gartner, W.3
-
26
-
-
1842637800
-
The LOV2 domain of phototropin: A reversible photochromic switch
-
Kennis, J.T.M. et al. The LOV2 domain of phototropin: a reversible photochromic switch. J. Am. Chem. Soc. 126, 4512-4513 (2004).
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 4512-4513
-
-
Kennis, J.T.M.1
-
27
-
-
0035983657
-
Photochemical properties of the flavin mononucleotide-binding domains of the photorropins from Arabidopsis, rice, and Chlamydomonas reinhardtii
-
Kasahara, M. et al. Photochemical properties of the flavin mononucleotide-binding domains of the photorropins from Arabidopsis, rice, and Chlamydomonas reinhardtii. Plant Physiol. 129, 762-773 (2002).
-
(2002)
Plant Physiol
, vol.129
, pp. 762-773
-
-
Kasahara, M.1
-
28
-
-
0032493389
-
Role of methionine 56 in the control of the oxidationreduction potentials of the clostridium beijerinckii flavodoxin: Effects of substitutions by aliphatic amino acids and evidence for a role of sulfur-flavin interactions
-
Druhan, L.J. & Swenson, R.P. Role of methionine 56 in the control of the oxidationreduction potentials of the Clostridium beijerinckii flavodoxin: effects of substitutions by aliphatic amino acids and evidence for a role of sulfur-flavin interactions. Biochemistry 37, 9668-9678 (1998).
-
(1998)
Biochemistry
, vol.37
, pp. 9668-9678
-
-
Druhan, L.J.1
Swenson, R.P.2
-
29
-
-
55849112690
-
Perturbation of the ground-state electronic structure of FMN by the conserved cysteine in phototropin LOV2 domains
-
Alexandre, M.T., Van Grondelle, R., Hellingwerf, K.J., Robert, B. & Kennis, J.T. Perturbation of the ground-state electronic structure of FMN by the conserved cysteine in phototropin LOV2 domains. Phys. Chem. Chem. Phys. 10, 6693-6702 (2008).
-
(2008)
Phys. Chem. Chem. Phys.
, vol.10
, pp. 6693-6702
-
-
Alexandre, M.T.1
Van Grondelle, R.2
Hellingwerf, K.J.3
Robert, B.4
Kennis, J.T.5
-
31
-
-
0037380836
-
Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii
-
Fedorov, R. et al. Crystal structures and molecular mechanism of a light-induced signaling switch: the Phot-LOV1 domain from Chlamydomonas reinhardtii. Biophys. J. 84, 2474-2482 (2003).
-
(2003)
Biophys. J.
, vol.84
, pp. 2474-2482
-
-
Fedorov, R.1
-
32
-
-
35148843374
-
Heterogeneous environment of the S-H Group of Cys966 near the flavin chromophore in the LOV2 domain of Adiantum neochrome 1
-
Sato, Y. et al. Heterogeneous environment of the S-H Group of Cys966 near the flavin chromophore in the LOV2 domain of Adiantum neochrome 1. Biochemistry 46, 10258-10265 (2007).
-
(2007)
Biochemistry
, vol.46
, pp. 10258-10265
-
-
Sato, Y.1
-
33
-
-
85029172518
-
Illuminating solution responses of a LOV-domain protein with photocoupled small angle X-ray scattering
-
(in the press)
-
Lamb, J.S. et al. Illuminating solution responses of a LOV-domain protein with photocoupled small angle X-ray scattering. J. Mol. Biol. (in the press).
-
J. Mol. Biol.
-
-
Lamb, J.S.1
-
34
-
-
38349119939
-
Role of Phe1010 in lightinduced structural changes of the neo1-LOV2 domain of adiantum
-
Yamamoto, A., Iwata, T., Tokutomi, S. & Kandori, H. Role of Phe1010 in lightinduced structural changes of the neo1-LOV2 domain of Adiantum. Biochemistry 47, 922-928 (2008).
-
(2008)
Biochemistry
, vol.47
, pp. 922-928
-
-
Yamamoto, A.1
Iwata, T.2
Tokutomi, S.3
Kandori, H.4
-
35
-
-
34548487765
-
Influence of the protein environment on the redox potentials of flavodoxins form Clostridium beijerinckii
-
Ishikita, H. Influence of the protein environment on the redox potentials of flavodoxins form Clostridium beijerinckii. J. Biol. Chem. 282, 25240-25246 (2007).
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 25240-25246
-
-
Ishikita, H.1
-
36
-
-
0018855280
-
Effect of hydrogen bonding on electronic spectra and reactivity of flavins
-
Yagi, K., Ohishi, N., Nishimoto, K., Choi, J.D. & Song, P.S. Effect of hydrogen bonding on electronic spectra and reactivity of flavins. Biochemistry 19, 1553-1557 (1980).
-
(1980)
Biochemistry
, vol.19
, pp. 1553-1557
-
-
Yagi, K.1
Ohishi, N.2
Nishimoto, K.3
Choi, J.D.4
Song, P.S.5
-
37
-
-
0037380836
-
Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii
-
Fedorov, R. et al. Crystal structures and molecular mechanism of a light-induced signaling switch: the Phot-LOV1 domain from Chlamydomonas reinhardtii. Biophys. J. 84, 2474-2482 (2003).
-
(2003)
Biophys. J.
, vol.84
, pp. 2474-2482
-
-
Fedorov, R.1
-
38
-
-
0037489440
-
Light-induced structural changes in the LOV2 domain of Adiantum phytochrome3 studied by low-temperature FTIR and UV-visible spectroscopy
-
Iwata, T. et al. Light-induced structural changes in the LOV2 domain of Adiantum phytochrome3 studied by low-temperature FTIR and UV-visible spectroscopy. Biochemistry 42, 8183-8191 (2003).
-
(2003)
Biochemistry
, vol.42
, pp. 8183-8191
-
-
Iwata, T.1
-
39
-
-
0037048688
-
Photoreaction of the cysteine S-H group in the LOV2 domain of Adiantum phytochrome3
-
Iwata, T., Tokutomi, S. & Kandori, H. Photoreaction of the cysteine S-H group in the LOV2 domain of Adiantum phytochrome3. J. Am. Chem. Soc. 124, 11840-11841 (2002).
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 11840-11841
-
-
Iwata, T.1
Tokutomi, S.2
Kandori, H.3
-
40
-
-
13644257678
-
Reactive cysteine is protonated in the triplet excited state of the LOV2 domain in Adiantum phytochrome3
-
Sato, Y., Iwata, T., Tokutomi, S. & Kandori, H. Reactive cysteine is protonated in the triplet excited state of the LOV2 domain in Adiantum phytochrome3. J. Am. Chem. Soc. 127, 1088-1089 (2005).
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 1088-1089
-
-
Sato, Y.1
Iwata, T.2
Tokutomi, S.3
Kandori, H.4
-
41
-
-
3242878844
-
On the reaction mechanism of adduct formation in LOV domains of the plant blue-light receptor phototropin
-
Schleicher, E. et al. On the reaction mechanism of adduct formation in LOV domains of the plant blue-light receptor phototropin. J. Am. Chem. Soc. 126, 11067-11076 (2004).
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 11067-11076
-
-
Schleicher, E.1
-
42
-
-
22344454499
-
When light falls in LOV: A quantum mechanical/molecular mechanical study of photoexcitation in Phot-LOV1 of Chlamydomonas reinhardtii
-
Dittrich, M., Freddolino, P.L. & Schulten, K. When light falls in LOV: a quantum mechanical/molecular mechanical study of photoexcitation in Phot-LOV1 of Chlamydomonas reinhardtii. J. Phys. Chem. B 109, 13006-13013 (2005).
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 13006-13013
-
-
Dittrich, M.1
Freddolino, P.L.2
Schulten, K.3
-
43
-
-
33846200481
-
Analysis of the primary photocycle reactions occurring in the light, oxygen, and voltage blue-light receptor by multiconfigurational quantum-chemical methods
-
Domratcheva, T., Fedorov, R. & Schlichting, I. Analysis of the primary photocycle reactions occurring in the light, oxygen, and voltage blue-light receptor by multiconfigurational quantum-chemical methods. J. Chem. Theory Comput. 2, 1565-1574 (2006).
-
(2006)
J. Chem. Theory Comput.
, vol.2
, pp. 1565-1574
-
-
Domratcheva, T.1
Fedorov, R.2
Schlichting, I.3
-
44
-
-
58849158421
-
A conserved glutamine plays a central role in LOV domain signal transmission and its duration
-
Nash, A.I., Ko, W.H., Harper, S.M. & Gardner, K.H. A conserved glutamine plays a central role in LOV domain signal transmission and its duration. Biochemistry 47, 13842-13849 (2008).
-
(2008)
Biochemistry
, vol.47
, pp. 13842-13849
-
-
Nash, A.I.1
Ko, W.H.2
Harper, S.M.3
Gardner, K.H.4
-
45
-
-
1342346564
-
Reactive oxygen species affect photomorphogenesis in neurospora crassa
-
Yoshida, Y. & Hasunuma, K. Reactive oxygen species affect photomorphogenesis in Neurospora crassa. J. Biol. Chem. 279, 6986-6993 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 6986-6993
-
-
Yoshida, Y.1
Hasunuma, K.2
-
46
-
-
49449118042
-
Light activated DNA binding in a designed allosteric protein
-
Strickland, D., Moffat, K. & Sosnick, T.R. Light activated DNA binding in a designed allosteric protein. Proc. Natl. Acad. Sci. USA 105, 10709-10714 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 10709-10714
-
-
Strickland, D.1
Moffat, K.2
Sosnick, T.R.3
-
47
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (1997).
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
48
-
-
84920325457
-
AMoRe: An automated package for molecular replacement
-
Navaza, J. AMoRe: an automated package for molecular replacement. Acta Crystallogr. A 50, 157-163 (1994).
-
(1994)
Acta Crystallogr A
, vol.50
, pp. 157-163
-
-
Navaza, J.1
-
49
-
-
0002705842
-
XtalView: A visual protein crystallographic software system for X11/ Xview
-
McRee, D.E. XtalView: a visual protein crystallographic software system for X11/ Xview. J. Mol. Graph. 10, 44-47 (1992).
-
(1992)
J. Mol. Graph.
, vol.10
, pp. 44-47
-
-
McRee, D.E.1
-
50
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brunger, A.T. et al. Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54, 905-921 (1998).
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
|