-
2
-
-
79351468726
-
Analysis of electric moments of RNA-binding proteins: implications for mechanism and prediction
-
Ahmad S., Sarai A. Analysis of electric moments of RNA-binding proteins: implications for mechanism and prediction. BMC Struct. Biol. 2011, 11:8.
-
(2011)
BMC Struct. Biol.
, vol.11
, pp. 8
-
-
Ahmad, S.1
Sarai, A.2
-
3
-
-
84862494264
-
Identification of RNA-protein interaction networks using PAR-CLIP
-
Ascano M., Hafner M., Cekan P., Gerstberger S., Tuschl T. Identification of RNA-protein interaction networks using PAR-CLIP. Wiley Interdiscip. Rev. RNA 2012, 3:159-177.
-
(2012)
Wiley Interdiscip. Rev. RNA
, vol.3
, pp. 159-177
-
-
Ascano, M.1
Hafner, M.2
Cekan, P.3
Gerstberger, S.4
Tuschl, T.5
-
4
-
-
0037787816
-
The PRINTS database: a resource for identification of protein families
-
Attwood T.K. The PRINTS database: a resource for identification of protein families. Brief. Bioinform. 2002, 3:252-263.
-
(2002)
Brief. Bioinform.
, vol.3
, pp. 252-263
-
-
Attwood, T.K.1
-
6
-
-
84861997955
-
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
-
Baltz A.G., Munschauer M., Schwanhäusser B., Vasile A., Murakawa Y., Schueler M., Youngs N., Penfold-Brown D., Drew K., Milek M., et al. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Mol. Cell 2012, 46:674-690.
-
(2012)
Mol. Cell
, vol.46
, pp. 674-690
-
-
Baltz, A.G.1
Munschauer, M.2
Schwanhäusser, B.3
Vasile, A.4
Murakawa, Y.5
Schueler, M.6
Youngs, N.7
Penfold-Brown, D.8
Drew, K.9
Milek, M.10
-
7
-
-
79957840868
-
Predicting protein associations with long noncoding RNAs
-
Bellucci M., Agostini F., Masin M., Tartaglia G.G. Predicting protein associations with long noncoding RNAs. Nat. Methods 2011, 8:444-445.
-
(2011)
Nat. Methods
, vol.8
, pp. 444-445
-
-
Bellucci, M.1
Agostini, F.2
Masin, M.3
Tartaglia, G.G.4
-
8
-
-
33846036096
-
The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data
-
Berman H., Henrick K., Nakamura H., Markley J.L. The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Res. 2007, 35(Database issue):D301-D303.
-
(2007)
Nucleic Acids Res.
, vol.35
, Issue.DATABASE ISSUE
-
-
Berman, H.1
Henrick, K.2
Nakamura, H.3
Markley, J.L.4
-
9
-
-
84861969926
-
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
-
Castello A., Fischer B., Eichelbaum K., Horos R., Beckmann B.M., Strein C., Davey N.E., Humphreys D.T., Preiss T., Steinmetz L.M., et al. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell 2012, 149:1393-1406.
-
(2012)
Cell
, vol.149
, pp. 1393-1406
-
-
Castello, A.1
Fischer, B.2
Eichelbaum, K.3
Horos, R.4
Beckmann, B.M.5
Strein, C.6
Davey, N.E.7
Humphreys, D.T.8
Preiss, T.9
Steinmetz, L.M.10
-
10
-
-
58149189877
-
GtRNAdb: a database of transfer RNA genes detected in genomic sequence
-
Chan P.P., Lowe T.M. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res. 2009, 37(Database issue):D93-D97.
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.DATABASE ISSUE
-
-
Chan, P.P.1
Lowe, T.M.2
-
11
-
-
41149087805
-
Predicting RNA-binding sites from the protein structure based on electrostatics, evolution and geometry
-
Chen Y.C., Lim C. Predicting RNA-binding sites from the protein structure based on electrostatics, evolution and geometry. Nucleic Acids Res. 2008, 36:e29.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Chen, Y.C.1
Lim, C.2
-
12
-
-
78049419038
-
Unmet challenges of structural genomics
-
Chruszcz M., Domagalski M., Osinski T., Wlodawer A., Minor W. Unmet challenges of structural genomics. Curr. Opin. Struct. Biol. 2010, 20:587-597.
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 587-597
-
-
Chruszcz, M.1
Domagalski, M.2
Osinski, T.3
Wlodawer, A.4
Minor, W.5
-
13
-
-
84863338065
-
RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction
-
Cruz J.A., Blanchet M.F., Boniecki M., Bujnicki J.M., Chen S.J., Cao S., Das R., Ding F., Dokholyan N.V., Flores S.C., et al. RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction. RNA 2012, 18:610-625.
-
(2012)
RNA
, vol.18
, pp. 610-625
-
-
Cruz, J.A.1
Blanchet, M.F.2
Boniecki, M.3
Bujnicki, J.M.4
Chen, S.J.5
Cao, S.6
Das, R.7
Ding, F.8
Dokholyan, N.V.9
Flores, S.C.10
-
14
-
-
33846021292
-
Tissue-specific differences in human transfer RNA expression
-
Dittmar K.A., Goodenbour J.M., Pan T. Tissue-specific differences in human transfer RNA expression. PLoS Genet. 2006, 2:e221.
-
(2006)
PLoS Genet.
, vol.2
-
-
Dittmar, K.A.1
Goodenbour, J.M.2
Pan, T.3
-
15
-
-
0032727991
-
Themes in RNA-protein recognition
-
Draper D.E. Themes in RNA-protein recognition. J.Mol. Biol. 1999, 293:255-270.
-
(1999)
J.Mol. Biol.
, vol.293
, pp. 255-270
-
-
Draper, D.E.1
-
16
-
-
39749121395
-
Evaluating conformational changes in protein structures binding RNA
-
Ellis J.J., Jones S. Evaluating conformational changes in protein structures binding RNA. Proteins 2008, 70:1518-1526.
-
(2008)
Proteins
, vol.70
, pp. 1518-1526
-
-
Ellis, J.J.1
Jones, S.2
-
17
-
-
0018877893
-
Specific labeling of 3' termini of RNA with T4 RNA ligase
-
England T.E., Bruce A.G., Uhlenbeck O.C. Specific labeling of 3' termini of RNA with T4 RNA ligase. Methods Enzymol. 1980, 65:65-74.
-
(1980)
Methods Enzymol.
, vol.65
, pp. 65-74
-
-
England, T.E.1
Bruce, A.G.2
Uhlenbeck, O.C.3
-
18
-
-
76649139475
-
Molecular recognition of RNA: challenges for modelling interactions and plasticity
-
Fulle S., Gohlke H. Molecular recognition of RNA: challenges for modelling interactions and plasticity. J.Mol. Recognit. 2010, 23:220-231.
-
(2010)
J.Mol. Recognit.
, vol.23
, pp. 220-231
-
-
Fulle, S.1
Gohlke, H.2
-
19
-
-
0031565730
-
Modelling protein docking using shape complementarity, electrostatics and biochemical information
-
Gabb H.A., Jackson R.M., Sternberg M.J. Modelling protein docking using shape complementarity, electrostatics and biochemical information. J.Mol. Biol. 1997, 272:106-120.
-
(1997)
J.Mol. Biol.
, vol.272
, pp. 106-120
-
-
Gabb, H.A.1
Jackson, R.M.2
Sternberg, M.J.3
-
20
-
-
84860765680
-
Systematic discovery of structural elements governing stability of mammalian messenger RNAs
-
Goodarzi H., Najafabadi H.S., Oikonomou P., Greco T.M., Fish L., Salavati R., Cristea I.M., Tavazoie S. Systematic discovery of structural elements governing stability of mammalian messenger RNAs. Nature 2012, 485:264-268.
-
(2012)
Nature
, vol.485
, pp. 264-268
-
-
Goodarzi, H.1
Najafabadi, H.S.2
Oikonomou, P.3
Greco, T.M.4
Fish, L.5
Salavati, R.6
Cristea, I.M.7
Tavazoie, S.8
-
21
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner M., Landthaler M., Burger L., Khorshid M., Hausser J., Berninger P., Rothballer A., Ascano M., Jungkamp A.C., Munschauer M., et al. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 2010, 141:129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
Rothballer, A.7
Ascano, M.8
Jungkamp, A.C.9
Munschauer, M.10
-
22
-
-
0036463655
-
Gcn4p, a master regulator of gene expression, is controlled at multiple levels by diverse signals of starvation and stress
-
Hinnebusch A.G., Natarajan K. Gcn4p, a master regulator of gene expression, is controlled at multiple levels by diverse signals of starvation and stress. Eukaryot. Cell 2002, 1:22-32.
-
(2002)
Eukaryot. Cell
, vol.1
, pp. 22-32
-
-
Hinnebusch, A.G.1
Natarajan, K.2
-
23
-
-
58149203231
-
InterPro: the integrative protein signature database
-
Hunter S., Apweiler R., Attwood T.K., Bairoch A., Bateman A., Binns D., Bork P., Das U., Daugherty L., Duquenne L., et al. InterPro: the integrative protein signature database. Nucleic Acids Res. 2009, 37(Database issue):D211-D215.
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.DATABASE ISSUE
-
-
Hunter, S.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
Bork, P.7
Das, U.8
Daugherty, L.9
Duquenne, L.10
-
24
-
-
33845865515
-
Amino acid residue doublet propensity in the protein-RNA interface and its application to RNA interface prediction
-
Kim O.T., Yura K., Go N. Amino acid residue doublet propensity in the protein-RNA interface and its application to RNA interface prediction. Nucleic Acids Res. 2006, 34:6450-6460.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 6450-6460
-
-
Kim, O.T.1
Yura, K.2
Go, N.3
-
25
-
-
80455178839
-
Classification of pseudo pairs between nucleotide bases and amino acids by analysis of nucleotide-protein complexes
-
Kondo J., Westhof E. Classification of pseudo pairs between nucleotide bases and amino acids by analysis of nucleotide-protein complexes. Nucleic Acids Res. 2011, 39:8628-8637.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 8628-8637
-
-
Kondo, J.1
Westhof, E.2
-
26
-
-
83555179181
-
A new residue-nucleotide propensity potential with structural information considered for discriminating protein-RNA docking decoys
-
Li C.H., Cao L.B., Su J.G., Yang Y.X., Wang C.X. A new residue-nucleotide propensity potential with structural information considered for discriminating protein-RNA docking decoys. Proteins 2012, 80:14-24.
-
(2012)
Proteins
, vol.80
, pp. 14-24
-
-
Li, C.H.1
Cao, L.B.2
Su, J.G.3
Yang, Y.X.4
Wang, C.X.5
-
27
-
-
84868377002
-
Codon-usage-based inhibition of HIV protein synthesis by human schlafen 11
-
Li M., Kao E., Gao X., Sandig H., Limmer K., Pavon-Eternod M., Jones T.E., Landry S., Pan T., Weitzman M.D., David M. Codon-usage-based inhibition of HIV protein synthesis by human schlafen 11. Nature 2012, 491:125-128.
-
(2012)
Nature
, vol.491
, pp. 125-128
-
-
Li, M.1
Kao, E.2
Gao, X.3
Sandig, H.4
Limmer, K.5
Pavon-Eternod, M.6
Jones, T.E.7
Landry, S.8
Pan, T.9
Weitzman, M.D.10
David, M.11
-
28
-
-
56549105330
-
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
-
Licatalosi D.D., Mele A., Fak J.J., Ule J., Kayikci M., Chi S.W., Clark T.A., Schweitzer A.C., Blume J.E., Wang X., et al. HITS-CLIP yields genome-wide insights into brain alternative RNA processing. Nature 2008, 456:464-469.
-
(2008)
Nature
, vol.456
, pp. 464-469
-
-
Licatalosi, D.D.1
Mele, A.2
Fak, J.J.3
Ule, J.4
Kayikci, M.5
Chi, S.W.6
Clark, T.A.7
Schweitzer, A.C.8
Blume, J.E.9
Wang, X.10
-
29
-
-
34249316905
-
RNA-binding proteins: modular design for efficient function
-
Lunde B.M., Moore C., Varani G. RNA-binding proteins: modular design for efficient function. Nat. Rev. Mol. Cell Biol. 2007, 8:479-490.
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 479-490
-
-
Lunde, B.M.1
Moore, C.2
Varani, G.3
-
30
-
-
77953656943
-
TRNA stabilization by modified nucleotides
-
Motorin Y., Helm M. tRNA stabilization by modified nucleotides. Biochemistry 2010, 49:4934-4944.
-
(2010)
Biochemistry
, vol.49
, pp. 4934-4944
-
-
Motorin, Y.1
Helm, M.2
-
31
-
-
80054685109
-
Critical assessment of methods of protein structure prediction (CASP)- round IX
-
Moult J., Fidelis K., Kryshtafovych A., Tramontano A. Critical assessment of methods of protein structure prediction (CASP)- round IX. Proteins 2011, 79(Suppl 10):1-5.
-
(2011)
Proteins
, vol.79
, Issue.SUPPL 10
, pp. 1-5
-
-
Moult, J.1
Fidelis, K.2
Kryshtafovych, A.3
Tramontano, A.4
-
32
-
-
70849104780
-
Innate immune and chemically triggered oxidative stress modifies translational fidelity
-
Netzer N., Goodenbour J.M., David A., Dittmar K.A., Jones R.B., Schneider J.R., Boone D., Eves E.M., Rosner M.R., Gibbs J.S., et al. Innate immune and chemically triggered oxidative stress modifies translational fidelity. Nature 2009, 462:522-526.
-
(2009)
Nature
, vol.462
, pp. 522-526
-
-
Netzer, N.1
Goodenbour, J.M.2
David, A.3
Dittmar, K.A.4
Jones, R.B.5
Schneider, J.R.6
Boone, D.7
Eves, E.M.8
Rosner, M.R.9
Gibbs, J.S.10
-
33
-
-
84859174156
-
A role for tRNA modifications in genome structure and codon usage
-
Novoa E.M., Pavon-Eternod M., Pan T., Ribas de Pouplana L. A role for tRNA modifications in genome structure and codon usage. Cell 2012, 149:202-213.
-
(2012)
Cell
, vol.149
, pp. 202-213
-
-
Novoa, E.M.1
Pavon-Eternod, M.2
Pan, T.3
Ribas de Pouplana, L.4
-
34
-
-
84857675809
-
On docking, scoring and assessing protein-DNA complexes in a rigid-body framework
-
Parisien M., Freed K.F., Sosnick T.R. On docking, scoring and assessing protein-DNA complexes in a rigid-body framework. PLoS One 2012, 7:e32647.
-
(2012)
PLoS One
, vol.7
-
-
Parisien, M.1
Freed, K.F.2
Sosnick, T.R.3
-
35
-
-
75149181741
-
TRNA over-expression in breast cancer and functional consequences
-
Pavon-Eternod M., Gomes S., Geslain R., Dai Q., Rosner M.R., Pan T. tRNA over-expression in breast cancer and functional consequences. Nucleic Acids Res. 2009, 37:7268-7280.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 7268-7280
-
-
Pavon-Eternod, M.1
Gomes, S.2
Geslain, R.3
Dai, Q.4
Rosner, M.R.5
Pan, T.6
-
36
-
-
77949343955
-
Optimal protein-RNA area, OPRA: a propensity-based method to identify RNA-binding sites on proteins
-
Pérez-Cano L., Fernández-Recio J. Optimal protein-RNA area, OPRA: a propensity-based method to identify RNA-binding sites on proteins. Proteins 2010, 78:25-35.
-
(2010)
Proteins
, vol.78
, pp. 25-35
-
-
Pérez-Cano, L.1
Fernández-Recio, J.2
-
37
-
-
33645678058
-
Transfer RNAs: electrostatic patterns and an early stage of recognition by synthetases and elongation factor EF-Tu
-
Polozov R.V., Montrel M., Ivanov V.V., Melnikov Y., Sivozhelezov V.S. Transfer RNAs: electrostatic patterns and an early stage of recognition by synthetases and elongation factor EF-Tu. Biochemistry 2006, 45:4481-4490.
-
(2006)
Biochemistry
, vol.45
, pp. 4481-4490
-
-
Polozov, R.V.1
Montrel, M.2
Ivanov, V.V.3
Melnikov, Y.4
Sivozhelezov, V.S.5
-
38
-
-
77957950490
-
Optimization of pyDock for the new CAPRI challenges: docking of homology-based models, domain-domain assembly and protein-RNA binding
-
Pons C., Solernou A., Perez-Cano L., Grosdidier S., Fernandez-Recio J. Optimization of pyDock for the new CAPRI challenges: docking of homology-based models, domain-domain assembly and protein-RNA binding. Proteins 2010, 78:3182-3188.
-
(2010)
Proteins
, vol.78
, pp. 3182-3188
-
-
Pons, C.1
Solernou, A.2
Perez-Cano, L.3
Grosdidier, S.4
Fernandez-Recio, J.5
-
39
-
-
84865194573
-
Computational methods for prediction of protein-RNA interactions
-
Puton T., Kozlowski L., Tuszynska I., Rother K., Bujnicki J.M. Computational methods for prediction of protein-RNA interactions. J.Struct. Biol. 2012, 179:261-268.
-
(2012)
J.Struct. Biol.
, vol.179
, pp. 261-268
-
-
Puton, T.1
Kozlowski, L.2
Tuszynska, I.3
Rother, K.4
Bujnicki, J.M.5
-
40
-
-
40949143180
-
Performing feature selection with multilayer perceptrons
-
Romero E., Sopena J.M. Performing feature selection with multilayer perceptrons. IEEE Trans. Neural Netw. 2008, 19:431-441.
-
(2008)
IEEE Trans. Neural Netw.
, vol.19
, pp. 431-441
-
-
Romero, E.1
Sopena, J.M.2
-
41
-
-
84868100738
-
Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions
-
Scheibe M., Butter F., Hafner M., Tuschl T., Mann M. Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions. Nucleic Acids Res. 2012, 40:9897-9902.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 9897-9902
-
-
Scheibe, M.1
Butter, F.2
Hafner, M.3
Tuschl, T.4
Mann, M.5
-
42
-
-
39149119601
-
Towards deciphering the principles underlying an mRNA recognition code
-
Serganov A., Patel D.J. Towards deciphering the principles underlying an mRNA recognition code. Curr. Opin. Struct. Biol. 2008, 18:120-129.
-
(2008)
Curr. Opin. Struct. Biol.
, vol.18
, pp. 120-129
-
-
Serganov, A.1
Patel, D.J.2
-
43
-
-
82255164407
-
A coarse-grained force field for Protein-RNA docking
-
Setny P., Zacharias M. A coarse-grained force field for Protein-RNA docking. Nucleic Acids Res. 2011, 39:9118-9129.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 9118-9129
-
-
Setny, P.1
Zacharias, M.2
-
45
-
-
50949129815
-
Classifying RNA-binding proteins based on electrostatic properties
-
Shazman S., Mandel-Gutfreund Y. Classifying RNA-binding proteins based on electrostatic properties. PLoS Comput. Biol. 2008, 4:e1000146.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Shazman, S.1
Mandel-Gutfreund, Y.2
-
46
-
-
43049091848
-
Prediction of interacting single-stranded RNA bases by protein-binding patterns
-
Shulman-Peleg A., Shatsky M., Nussinov R., Wolfson H.J. Prediction of interacting single-stranded RNA bases by protein-binding patterns. J.Mol. Biol. 2008, 379:299-316.
-
(2008)
J.Mol. Biol.
, vol.379
, pp. 299-316
-
-
Shulman-Peleg, A.1
Shatsky, M.2
Nussinov, R.3
Wolfson, H.J.4
-
47
-
-
0034575775
-
Protein-protein docking. Generation and filtering of complexes
-
Sternberg M.J., Gabb H.A., Jackson R.M., Moont G. Protein-protein docking. Generation and filtering of complexes. Methods Mol. Biol. 2000, 143:399-415.
-
(2000)
Methods Mol. Biol.
, vol.143
, pp. 399-415
-
-
Sternberg, M.J.1
Gabb, H.A.2
Jackson, R.M.3
Moont, G.4
-
48
-
-
80051788801
-
DARS-RNP and QUASI-RNP: new statistical potentials for protein-RNA docking
-
Tuszynska I., Bujnicki J.M. DARS-RNP and QUASI-RNP: new statistical potentials for protein-RNA docking. BMC Bioinformatics 2011, 12:348.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 348
-
-
Tuszynska, I.1
Bujnicki, J.M.2
-
49
-
-
0038583686
-
The long-range electrostatic interactions control tRNA-aminoacyl-tRNA synthetase complex formation
-
Tworowski D., Safro M. The long-range electrostatic interactions control tRNA-aminoacyl-tRNA synthetase complex formation. Protein Sci. 2003, 12:1247-1251.
-
(2003)
Protein Sci.
, vol.12
, pp. 1247-1251
-
-
Tworowski, D.1
Safro, M.2
-
50
-
-
21744438763
-
Electrostatic potential of aminoacyl-tRNA synthetase navigates tRNA on its pathway to the binding site
-
Tworowski D., Feldman A.V., Safro M.G. Electrostatic potential of aminoacyl-tRNA synthetase navigates tRNA on its pathway to the binding site. J.Mol. Biol. 2005, 350:866-882.
-
(2005)
J.Mol. Biol.
, vol.350
, pp. 866-882
-
-
Tworowski, D.1
Feldman, A.V.2
Safro, M.G.3
-
51
-
-
78650034777
-
Towards a knowledge-based Human Protein Atlas
-
Uhlen M., Oksvold P., Fagerberg L., Lundberg E., Jonasson K., Forsberg M., Zwahlen M., Kampf C., Wester K., Hober S., et al. Towards a knowledge-based Human Protein Atlas. Nat. Biotechnol. 2010, 28:1248-1250.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 1248-1250
-
-
Uhlen, M.1
Oksvold, P.2
Fagerberg, L.3
Lundberg, E.4
Jonasson, K.5
Forsberg, M.6
Zwahlen, M.7
Kampf, C.8
Wester, K.9
Hober, S.10
-
52
-
-
0242497663
-
CLIP identifies Nova-regulated RNA networks in the brain
-
Ule J., Jensen K.B., Ruggiu M., Mele A., Ule A., Darnell R.B. CLIP identifies Nova-regulated RNA networks in the brain. Science 2003, 302:1212-1215.
-
(2003)
Science
, vol.302
, pp. 1212-1215
-
-
Ule, J.1
Jensen, K.B.2
Ruggiu, M.3
Mele, A.4
Ule, A.5
Darnell, R.B.6
-
53
-
-
27944508215
-
CLIP: a method for identifying protein-RNA interaction sites in living cells
-
Ule J., Jensen K., Mele A., Darnell R.B. CLIP: a method for identifying protein-RNA interaction sites in living cells. Methods 2005, 37:376-386.
-
(2005)
Methods
, vol.37
, pp. 376-386
-
-
Ule, J.1
Jensen, K.2
Mele, A.3
Darnell, R.B.4
-
54
-
-
80052036917
-
Swift: a language for distributed parallel scripting
-
Wilde M., Hategan M., Wozniak J.M., Clifford B., Katz D.S., Foster I. Swift: a language for distributed parallel scripting. Parallel Comput. 2011, 37:633-652.
-
(2011)
Parallel Comput.
, vol.37
, pp. 633-652
-
-
Wilde, M.1
Hategan, M.2
Wozniak, J.M.3
Clifford, B.4
Katz, D.S.5
Foster, I.6
-
55
-
-
79960230895
-
Mapping invivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
-
Zhang C., Darnell R.B. Mapping invivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data. Nat. Biotechnol. 2011, 29:607-614.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 607-614
-
-
Zhang, C.1
Darnell, R.B.2
-
56
-
-
77954838957
-
Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls
-
Zhang C., Frias M.A., Mele A., Ruggiu M., Eom T., Marney C.B., Wang H., Licatalosi D.D., Fak J.J., Darnell R.B. Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls. Science 2010, 329:439-443.
-
(2010)
Science
, vol.329
, pp. 439-443
-
-
Zhang, C.1
Frias, M.A.2
Mele, A.3
Ruggiu, M.4
Eom, T.5
Marney, C.B.6
Wang, H.7
Licatalosi, D.D.8
Fak, J.J.9
Darnell, R.B.10
-
57
-
-
79955638463
-
Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets
-
Zhao H., Yang Y., Zhou Y. Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets. Nucleic Acids Res. 2011, 39:3017-3025.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 3017-3025
-
-
Zhao, H.1
Yang, Y.2
Zhou, Y.3
-
58
-
-
36749008025
-
A knowledge-based potential function predicts the specificity and relative binding energy of RNA-binding proteins
-
Zheng S., Robertson T.A., Varani G. A knowledge-based potential function predicts the specificity and relative binding energy of RNA-binding proteins. FEBS J. 2007, 274:6378-6391.
-
(2007)
FEBS J.
, vol.274
, pp. 6378-6391
-
-
Zheng, S.1
Robertson, T.A.2
Varani, G.3
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