-
1
-
-
56549105330
-
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
-
DOI 10.1038/nature07488, PII NATURE07488
-
Licatalosi, D.D., Mele, A., Fak, J.J., Ule, J., Kayikci, M., Chi, S.W., Clark, T.A., Schweitzer, A.C., Blume, J.E., Wang, X. et al. (2008) HITS-CLIP yields genome-wide insights into brain alternative RNA processing. Nature, 456, 464-469. (Pubitemid 352759008)
-
(2008)
Nature
, vol.456
, Issue.7221
, pp. 464-469
-
-
Licatalosi, D.D.1
Mele, A.2
Fak, J.J.3
Ule, J.4
Kayikci, M.5
Chi, S.W.6
Clark, T.A.7
Schweitzer, A.C.8
Blume, J.E.9
Wang, X.10
Darnell, J.C.11
Darnell, R.B.12
-
2
-
-
0034644626
-
Plasma membrane compartmentalization in yeast by messenger RNA transport and a septin diffusion barrier
-
Takizawa, P.A., DeRisi, J.L., Wilhelm, J.E. and Vale, R.D. (2000) Plasma membrane compartmentalization in yeast by messenger RNA transport and a septin diffusion barrier. Science, 290, 341-344.
-
(2000)
Science
, vol.290
, pp. 341-344
-
-
Takizawa, P.A.1
Derisi, J.L.2
Wilhelm, J.E.3
Vale, R.D.4
-
3
-
-
0242497663
-
CLIP identifies nova-regulated RNA networks in the brain
-
DOI 10.1126/science.1090095
-
Ule, J., Jensen, K.B., Ruggiu, M., Mele, A., Ule, A. and Darnell, R.B. (2003) CLIP identifies Nova-regulated RNA networks in the brain. Science, 302, 1212-1215. (Pubitemid 37421026)
-
(2003)
Science
, vol.302
, Issue.5648
, pp. 1212-1215
-
-
Ule, J.1
Jensen, K.B.2
Ruggiu, M.3
Mele, A.4
Ule, A.5
Darnell, R.B.6
-
4
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner, M., Landthaler, M., Burger, L., Khorshid, M., Hausser, J., Berninger, P., Rothballer, A., Ascano, M. Jr, Jungkamp, A.C., Munschauer, M. et al. (2010) Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell, 141, 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
Rothballer, A.7
Ascano Jr., M.8
Jungkamp, A.C.9
Munschauer, M.10
-
5
-
-
79959813870
-
A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins
-
Kishore, S., Jaskiewicz, L., Burger, L., Hausser, J., Khorshid, M. and Zavolan, M. (2011) A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins. Nat. Methods, 8, 559-564.
-
(2011)
Nat. Methods
, vol.8
, pp. 559-564
-
-
Kishore, S.1
Jaskiewicz, L.2
Burger, L.3
Hausser, J.4
Khorshid, M.5
Zavolan, M.6
-
6
-
-
67649774581
-
Unbiased RNA-protein interaction screen by quantitative proteomics
-
Butter, F., Scheibe, M., Morl, M. and Mann, M. (2009) Unbiased RNA-protein interaction screen by quantitative proteomics. Proc. Natl Acad. Sci. USA, 106, 10626-10631.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 10626-10631
-
-
Butter, F.1
Scheibe, M.2
Morl, M.3
Mann, M.4
-
7
-
-
67349196123
-
A HUPO test sample study reveals common problems in mass spectrometry-based proteomics
-
Bell, A.W., Deutsch, E.W., Au, C.E., Kearney, R.E., Beavis, R., Sechi, S., Nilsson, T. and Bergeron, J.J. (2009) A HUPO test sample study reveals common problems in mass spectrometry-based proteomics. Nat. Methods, 6, 423-430.
-
(2009)
Nat. Methods
, vol.6
, pp. 423-430
-
-
Bell, A.W.1
Deutsch, E.W.2
Au, C.E.3
Kearney, R.E.4
Beavis, R.5
Sechi, S.6
Nilsson, T.7
Bergeron, J.J.8
-
8
-
-
81255210913
-
Quantitative mass spectrometry of DENV-2 RNA-interacting proteins reveals that the DEAD-box RNA helicase DDX6 binds the DB1 and DB2 3' UTR structures
-
Ward, A.M., Bidet, K., Yinglin, A., Ler, S.G., Hogue, K., Blackstock, W., Gunaratne, J. and Garcia-Blanco, M.A. (2011) Quantitative mass spectrometry of DENV-2 RNA-interacting proteins reveals that the DEAD-box RNA helicase DDX6 binds the DB1 and DB2 3' UTR structures. RNA Biol., 8, 1173-1186.
-
(2011)
RNA Biol.
, vol.8
, pp. 1173-1186
-
-
Ward, A.M.1
Bidet, K.2
Yinglin, A.3
Ler, S.G.4
Hogue, K.5
Blackstock, W.6
Gunaratne, J.7
Garcia-Blanco, M.A.8
-
9
-
-
79953321612
-
Quantitative profiling of in vivo-assembled RNA-protein complexes using a novel integrated proteomic approach
-
Tsai, B.P., Wang, X., Huang, L. and Waterman, M.L. (2011) Quantitative profiling of in vivo-assembled RNA-protein complexes using a novel integrated proteomic approach. Mol. Cell. Proteomics, 10, M110 007385.
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Tsai, B.P.1
Wang, X.2
Huang, L.3
Waterman, M.L.4
-
10
-
-
0021100690
-
Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
-
Dignam, J.D., Lebovitz, R.M. and Roeder, R.G. (1983) Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res., 11, 1475-1489.
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 1475-1489
-
-
Dignam, J.D.1
Lebovitz, R.M.2
Roeder, R.G.3
-
11
-
-
0035001466
-
Streptavidin aptamers: Affinity tags for the study of RNAs and ribonucleoproteins
-
DOI 10.1017/S135583820100245X
-
Srisawat, C. and Engelke, D.R. (2001) Streptavidin aptamers: affinity tags for the study of RNAs and ribonucleoproteins. RNA, 7, 632-641. (Pubitemid 32416820)
-
(2001)
RNA
, vol.7
, Issue.4
, pp. 632-641
-
-
Srisawat, C.1
Engelke, D.R.2
-
12
-
-
34548336772
-
Higher-energy C-trap dissociation for peptide modification analysis
-
DOI 10.1038/nmeth1060, PII NMETH1060
-
Olsen, J.V., Macek, B., Lange, O., Makarov, A., Horning, S. and Mann, M. (2007) Higher-energy C-trap dissociation for peptide modification analysis. Nat. Methods, 4, 709-712. (Pubitemid 47338163)
-
(2007)
Nature Methods
, vol.4
, Issue.9
, pp. 709-712
-
-
Olsen, J.V.1
Macek, B.2
Lange, O.3
Makarov, A.4
Horning, S.5
Mann, M.6
-
13
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox, J. and Mann, M. (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol.
-
(2008)
Nat. Biotechnol
-
-
Cox, J.1
Mann, M.2
-
14
-
-
80855128254
-
Deep proteome and transcriptome mapping of a human cancer cell line
-
Nagaraj, N., Wisniewski, J.R., Geiger, T., Cox, J., Kircher, M., Kelso, J., Paabo, S. and Mann, M. (2011) Deep proteome and transcriptome mapping of a human cancer cell line. Mol. Syst. Biol., 7, 548.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 548
-
-
Nagaraj, N.1
Wisniewski, J.R.2
Geiger, T.3
Cox, J.4
Kircher, M.5
Kelso, J.6
Paabo, S.7
Mann, M.8
-
15
-
-
58149092016
-
Control of c-myc mRNA stability by IGF2BP1-associated cytoplasmic RNPs
-
Weidensdorfer, D., Stohr, N., Baude, A., Lederer, M., Kohn, M., Schierhorn, A., Buchmeier, S., Wahle, E. and Huttelmaier, S. (2009) Control of c-myc mRNA stability by IGF2BP1-associated cytoplasmic RNPs. RNA, 15, 104-115.
-
(2009)
RNA
, vol.15
, pp. 104-115
-
-
Weidensdorfer, D.1
Stohr, N.2
Baude, A.3
Lederer, M.4
Kohn, M.5
Schierhorn, A.6
Buchmeier, S.7
Wahle, E.8
Huttelmaier, S.9
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