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Volumn 28, Issue 2, 2013, Pages 244-250

Candidatus methanogranum caenicola: A novel methanogen from the anaerobic digested sludge, and proposal of Methanomassiliicoccaceae fam. nov. and Methanomassiliicoccales ord. nov., for a methanogenic lineage of the class Thermoplasmata

Author keywords

Anaerobic digested sludge; Methanogen; Methanogranum caenicola; Rice cluster III; Thermoplasmata

Indexed keywords

ARCHAEAL DNA; METHANE; RIBOSOME DNA; RNA 16S;

EID: 84878500513     PISSN: 13426311     EISSN: 13474405     Source Type: Journal    
DOI: 10.1264/jsme2.ME12189     Document Type: Article
Times cited : (182)

References (62)
  • 1
    • 79953746426 scopus 로고    scopus 로고
    • Distinctive responses of metabolically active microbiota to acidification in a thermophilic anaerobic digester
    • Akuzawa, M., T. Hori, S. Haruta, Y. Ueno, M. Ishii, and Y. Igarashi. 2011. Distinctive responses of metabolically active microbiota to acidification in a thermophilic anaerobic digester. Microb. Ecol. 61:595-605.
    • (2011) Microb. Ecol , vol.61 , pp. 595-605
    • Akuzawa, M.1    Hori, T.2    Haruta, S.3    Ueno, Y.4    Ishii, M.5    Igarashi, Y.6
  • 2
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R.I., B.J. Binder, R.J. Olson, S.W. Chisholm, R. Devereux, and D.A. Stahl. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1919-1925.
    • (1990) Appl. Environ. Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 3
    • 0033012295 scopus 로고    scopus 로고
    • Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field soil
    • Chin, K.-J., L. Thomas, and R. Conrad. 1999. Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field soil. Appl. Environ. Microbiol. 65:2341-2349.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 2341-2349
    • Chin, K.-J.1    Thomas, L.2    Conrad, R.3
  • 4
    • 0014963118 scopus 로고
    • A thermophilic, acidophilic mycoplasma isolated from a coal refuse pile
    • Darland, G., T.D. Brock, W. Samsonoff, and S.F. Conti. 1970. A thermophilic, acidophilic mycoplasma isolated from a coal refuse pile. Science 170:1416-1418.
    • (1970) Science , vol.170 , pp. 1416-1418
    • Darland, G.1    Brock, T.D.2    Samsonoff, W.3    Conti, S.F.4
  • 5
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E.F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. U.S.A. 89:5685-5689.
    • (1992) Proc. Natl. Acad. Sci. U.S.A , vol.89 , pp. 5685-5689
    • Delong, E.F.1
  • 6
    • 0035527414 scopus 로고    scopus 로고
    • Environmental diversity of bacteria and archaea
    • DeLong, E.F., and N.R. Pace. 2001. Environmental diversity of bacteria and archaea. Syst. Biol. 50:470-478.
    • (2001) Syst. Biol , vol.50 , pp. 470-478
    • Delong, E.F.1    Pace, N.R.2
  • 7
    • 0028594902 scopus 로고
    • High abundance of Archaea in Antarctic marine picoplankton
    • DeLong, E.F., K.Y. Wu, B.B. Prezelin, and R.V. Jovine. 1994. High abundance of Archaea in Antarctic marine picoplankton. Nature 371:695-697.
    • (1994) Nature , vol.371 , pp. 695-697
    • Delong, E.F.1    Wu, K.Y.2    Prezelin, B.B.3    Jovine, R.V.4
  • 8
    • 0032189023 scopus 로고    scopus 로고
    • Microbial diversity in a hydrocarbon-and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
    • Dojka, M.A., P. Hugenholtz, S.K. Haack, and N.R. Pace. 1998. Microbial diversity in a hydrocarbon-and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl. Environ. Microbiol. 64:3869-3877.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 3869-3877
    • Dojka, M.A.1    Hugenholtz, P.2    Haack, S.K.3    Pace, N.R.4
  • 9
    • 84864677092 scopus 로고    scopus 로고
    • Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces
    • Dridi, B., M.-L. Fardeau, B. Ollivier, D. Raoult, and M. Drancourt. 2012. Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces. Int. J. Syst. Evol. Microbiol. 62:1902-1907.
    • (2012) Int. J. Syst. Evol. Microbiol , vol.62 , pp. 1902-1907
    • Dridi, B.1    Fardeau, M.-L.2    Ollivier, B.3    Raoult, D.4    Drancourt, M.5
  • 10
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 11
    • 30744456055 scopus 로고    scopus 로고
    • The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane gormation and ATP synthesis
    • Fricke, W.F., H. Seedorf, Henne, M., Krüer, H. Liesegang, R. Hedderich, G. Gottschalk, and R.K. Thauer. 2006. The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane gormation and ATP synthesis. J. Bacteriol. 188:642-658.
    • (2006) J. Bacteriol , vol.188 , pp. 642-658
    • Fricke, W.F.1    Seedorf, H.2    Henne, M.3    Krüer, H.L.4    Hedderich, R.5    Gottschalk, G.6    Thauer, R.K.7
  • 12
    • 0035488974 scopus 로고    scopus 로고
    • Axial differences in community structure of Crenarchaeota and Euryarchaeota in the highly compartmentalized gut of the soil-feeding termite Cubitermes orthognathus
    • Friedrich, M.W., D. Schmitt-Wagner, T. Lueders, and A. Brune. 2001. Axial differences in community structure of Crenarchaeota and Euryarchaeota in the highly compartmentalized gut of the soil-feeding termite Cubitermes orthognathus. Appl. Environ. Microbiol. 67:4880-4890.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 4880-4890
    • Friedrich, M.W.1    Schmitt-Wagner, D.2    Lueders, T.3    Brune, A.4
  • 13
    • 0030872620 scopus 로고    scopus 로고
    • Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
    • Godon, J.-J., E. Zumstein, P. Dabert, F. Habouzit, and R. Moletta. 1997. Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl. Environ. Microbiol. 63:2802-2813.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 2802-2813
    • Godon, J.-J.1    Zumstein, E.2    Dabert, P.3    Habouzit, F.4    Moletta, R.5
  • 14
    • 17144438252 scopus 로고    scopus 로고
    • Ferroplasma acidiphilum gen. nov., sp. nov., an acidophilic, autotrophic, ferrous-iron-oxidizing, cell-wall-lacking, mesophilic member of the Ferroplasmaceae fam. nov., comprising a distinct lineage of the Archaea
    • Golyshina, O.V., T.A. Pivovarova, G.I. Karavaiko, et al. 2000. Ferroplasma acidiphilum gen. nov., sp. nov., an acidophilic, autotrophic, ferrous-iron-oxidizing, cell-wall-lacking, mesophilic member of the Ferroplasmaceae fam. nov., comprising a distinct lineage of the Archaea. Int. J. Syst. Evol. Microbiol. 50:997-1006.
    • (2000) Int. J. Syst. Evol. Microbiol , vol.50 , pp. 997-1006
    • Golyshina, O.V.1    Pivovarova, T.A.2    Karavaiko, G.I.3
  • 15
    • 70450275832 scopus 로고    scopus 로고
    • Acidiplasma aeolicum gen. nov., sp. nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. nov
    • Golyshina, O.V., M.M. Yakimov, H. Lünsdorf, M. Ferrer, M. Nimtz, K.N. Timmis, V. Wray, B.J. Tindall, and P.N. Golyshin 2009. Acidiplasma aeolicum gen. nov., sp. nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. nov. Int. J. Syst. Evol. Microbiol. 59:2815-2823.
    • (2009) Int. J. Syst. Evol. Microbiol , vol.59 , pp. 2815-2823
    • Golyshina, O.V.1    Yakimov, M.M.2    Lünsdorf, H.3    Ferrer, M.4    Nimtz, M.5    Timmis, K.N.6    Wray, V.7    Tindall, B.J.8    Golyshin, P.N.9
  • 16
    • 84866338044 scopus 로고    scopus 로고
    • Complete genome sequence of Methanomassiliicoccus luminyensis, the largest genome of a human-associated Archaea species
    • Gorlas, A., C. Robert, G. Gimenez, M. Drancourt, and D. Raoult. 2012. Complete genome sequence of Methanomassiliicoccus luminyensis, the largest genome of a human-associated Archaea species. J. Bacteriol. 194:4745.
    • (2012) J. Bacteriol , vol.194 , pp. 4745
    • Gorlas, A.1    Robert, C.2    Gimenez, G.3    Drancourt, M.4    Raoult, D.5
  • 17
    • 0040336333 scopus 로고    scopus 로고
    • Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms
    • Großkpof, R., S. Stubner, and W. Liesack. 1998. Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl. Environ. Microbiol. 63:4983-4989.
    • (1998) Appl. Environ. Microbiol , vol.63 , pp. 4983-4989
    • Großkpof, R.1    Stubner, S.2    Liesack, W.3
  • 18
    • 0017886342 scopus 로고
    • Preparation of coenzyme M analogues and their activity in the methyl coenzyme M reductase system of Methanobacterium thermoautotrophicum
    • Gunsalus, R.P., J.A. Romesser, and R.S. Wolfe. 1978. Preparation of coenzyme M analogues and their activity in the methyl coenzyme M reductase system of Methanobacterium thermoautotrophicum. Biochemistry 17:2374-2377.
    • (1978) Biochemistry , vol.17 , pp. 2374-2377
    • Gunsalus, R.P.1    Romesser, J.A.2    Wolfe, R.S.3
  • 19
    • 24644443596 scopus 로고    scopus 로고
    • Phylogenetic analysis of symbiotic archaea living in the gut of xylophagous cockroaches
    • Hara, K., N. Shinzato, M. Seo, T. Oshima, and A. Yamagishi. 2002. Phylogenetic analysis of symbiotic archaea living in the gut of xylophagous cockroaches. Microb. Environ. 17:185-190.
    • (2002) Microb. Environ , vol.17 , pp. 185-190
    • Hara, K.1    Shinzato, N.2    Seo, M.3    Oshima, T.4    Yamagishi, A.5
  • 20
    • 0022376704 scopus 로고
    • Dating of the human ape splitting by a molecular clock of mitochondrial-DNA
    • Hasegawa, M., H. Kishino, and T.A. Yano. 1985. Dating of the human ape splitting by a molecular clock of mitochondrial-DNA. J. Mol. Evol. 22:160-174.
    • (1985) J. Mol. Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.A.3
  • 21
    • 33144462974 scopus 로고    scopus 로고
    • Dynamic transition of a methanogenic population in response to the concentration of volatile fatty acids in a thermophilic anaerobic digester
    • Hori, T., S. Haruta, Y. Ueno, M. Ishii, and Y. Igarashi. 2006. Dynamic transition of a methanogenic population in response to the concentration of volatile fatty acids in a thermophilic anaerobic digester. Appl. Environ. Microbiol. 72:1623-1630.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 1623-1630
    • Hori, T.1    Haruta, S.2    Ueno, Y.3    Ishii, M.4    Igarashi, Y.5
  • 22
    • 0242285526 scopus 로고    scopus 로고
    • Characterization of methanogenic Archaea in the leachate of a closed municipal solid waste landfill
    • Huang, L.N., Y.Q. Chen, H. Zhou, S. Luo, C.Y. Lan, and L.H. Qu. 2003. Characterization of methanogenic Archaea in the leachate of a closed municipal solid waste landfill. FEMS Microbiol. Ecol. 46:171-177
    • (2003) FEMS Microbiol. Ecol , vol.46 , pp. 171-177
    • Huang, L.N.1    Chen, Y.Q.2    Zhou, H.3    Luo, S.4    Lan, C.Y.5    Qu, L.H.6
  • 23
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J.P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 24
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz, P., C. Pitulle, K.L. Hershberger, and N.R. Pace. 1998. Novel division level bacterial diversity in a Yellowstone hot spring. J. Bacteriol. 180:366-376.
    • (1998) J. Bacteriol , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 25
    • 34548163396 scopus 로고    scopus 로고
    • Oscillibacter valericigenes gen. nov., sp. nov., a valerate-producing anaerobic bacterium isolated from the alimentary canal of a Japanese corbicula clam
    • Iino, T., K. Mori, K. Tanaka, K. Suzuki, and S. Harayama. 2007. Oscillibacter valericigenes gen. nov., sp. nov., a valerate-producing anaerobic bacterium isolated from the alimentary canal of a Japanese corbicula clam. Int. J. Syst. Evol. Microbiol. 57:1840-1845.
    • (2007) Int. J. Syst. Evol. Microbiol , vol.57 , pp. 1840-1845
    • Iino, T.1    Mori, K.2    Tanaka, K.3    Suzuki, K.4    Harayama, S.5
  • 26
    • 66149131514 scopus 로고    scopus 로고
    • Lacticigenium naphtae gen. nov., sp. nov., a novel halotolerant and motile lactic acid bacterium isolated from crude oil
    • Iino, T., K. Suzuki, and S. Harayama. 2009. Lacticigenium naphtae gen. nov., sp. nov., a novel halotolerant and motile lactic acid bacterium isolated from crude oil. Int. J. Syst. Evol. Microbiol. 59:775-780.
    • (2009) Int. J. Syst. Evol. Microbiol , vol.59 , pp. 775-780
    • Iino, T.1    Suzuki, K.2    Harayama, S.3
  • 27
    • 77953304160 scopus 로고    scopus 로고
    • Ignavibacterium album gen. nov., sp. nov., a moderately thermophilic anaerobic bacterium isolated from microbial mats at a terrestrial hot spring and proposal of Ignavibacteria classis nov., for a novel lineage at the periphery of green sulfur bacteria
    • Iino, T., K. Mori, Y. Uchino, T. Nakagawa, S. Harayama, and K. Suzuki. 2010a. Ignavibacterium album gen. nov., sp. nov., a moderately thermophilic anaerobic bacterium isolated from microbial mats at a terrestrial hot spring and proposal of Ignavibacteria classis nov., for a novel lineage at the periphery of green sulfur bacteria. Int. J. Syst. Evol. Microbiol. 60:1376-1382.
    • (2010) Int. J. Syst. Evol. Microbiol , vol.60 , pp. 1376-1382
    • Iino, T.1    Mori, K.2    Uchino, Y.3    Nakagawa, T.4    Harayama, S.5    Suzuki, K.6
  • 28
    • 36549000261 scopus 로고    scopus 로고
    • Thermogymnomonas acidicola gen. nov., sp. nov., a novel thermoacidophilic, cell wall-less archaeon in the order Thermoplasmatales, isolated from a solfataric soil in Hakone
    • Itoh, T., N. Yoshikawa, and T. Takashina. 2007. Thermogymnomonas acidicola gen. nov., sp. nov., a novel thermoacidophilic, cell wall-less archaeon in the order Thermoplasmatales, isolated from a solfataric soil in Hakone, Japan. Int. J. Syst. Evol. Microbiol. 57:2557-2561.
    • (2007) Japan. Int. J. Syst. Evol. Microbiol , vol.57 , pp. 2557-2561
    • Itoh, T.1    Yoshikawa, N.2    Takashina, T.3
  • 29
    • 0001006634 scopus 로고
    • Electron transfer reactions in methanogens
    • Keltjens, J.T., and C. van der Drift. 1986. Electron transfer reactions in methanogens. FEMS Microbiol. Rev. 39:259-303.
    • (1986) FEMS Microbiol. Rev , vol.39 , pp. 259-303
    • Keltjens, J.T.1    van der Drift, C.2
  • 30
    • 15944406459 scopus 로고    scopus 로고
    • Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture
    • Kemnitz, D., S. Kolb, and R. Conrad. 2005. Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture. Environ. Microbiol. 7:553-565.
    • (2005) Environ. Microbiol , vol.7 , pp. 553-565
    • Kemnitz, D.1    Kolb, S.2    Conrad, R.3
  • 31
    • 0004320741 scopus 로고
    • (ed.), P.H.A. Sneath. editor for 1992 edition, Revision, Published for the International Union of Microbiological Societies by the American Society for Microbiology. Washington, D.C
    • Lapage, S.P., P.H.A. Sneath, E.F. Lessel, V.B.D. Skerman, H.P.R. Seeliger, and W.A. Clark (ed.). P.H.A. Sneath. editor for 1992 edition (1992) International Code of Nomenclature of Bacteria, 1990 Revision, Published for the International Union of Microbiological Societies by the American Society for Microbiology. Washington, D.C.
    • (1992) International Code of Nomenclature of Bacteria
    • Lapage, S.P.1    Sneath, P.H.A.2    Lessel, E.F.3    Skerman, V.B.D.4    Seeliger, H.P.R.5    Clark, W.A.6
  • 32
    • 2542523843 scopus 로고    scopus 로고
    • ARB: A software environment for sequence data
    • Ludwig, W., O. Strunk, R. Westram, et al. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1363-1371
    • Ludwig, W.1    Strunk, O.2    Westram, R.3
  • 33
    • 52349091138 scopus 로고    scopus 로고
    • A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene
    • Mihajlovski, A., M. Alric, and J.F. Brugére. 2008. A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene. Res. Microbiol. 159:516-521.
    • (2008) Res. Microbiol , vol.159 , pp. 516-521
    • Mihajlovski, A.1    Alric, M.2    Brugére, J.F.3
  • 34
    • 0021921541 scopus 로고
    • Methanosphaera stadtmaniae gen. nov., sp. nov.: A species that forms methane by reducing methanol with hydrogen
    • Miller, T.L., and M.J. Wollin. 1985. Methanosphaera stadtmaniae gen. nov., sp. nov.: a species that forms methane by reducing methanol with hydrogen. Arch. Microbiol. 141:116-122.
    • (1985) Arch. Microbiol , vol.141 , pp. 116-122
    • Miller, T.L.1    Wollin, M.J.2
  • 35
    • 84861163330 scopus 로고    scopus 로고
    • Aceticlastic and NaCl-requiring methanogen "Methanosaeta pelagica" sp. nov., isolated from marine tidal flat sediment
    • Mori, K., T. Iino, K. Suzuki, K. Yamaguchi, and Y. Kamagata. 2012. Aceticlastic and NaCl-requiring methanogen "Methanosaeta pelagica" sp. nov., isolated from marine tidal flat sediment. Appl. Environ. Microbiol. 78:3416-3423.
    • (2012) Appl. Environ. Microbiol , vol.78 , pp. 3416-3423
    • Mori, K.1    Iino, T.2    Suzuki, K.3    Yamaguchi, K.4    Kamagata, Y.5
  • 36
    • 0022474990 scopus 로고
    • Utilization of methanol plus hydrogen by Methanosarcina barkeri for methanogenesis and growth
    • Müller, V., M. Blaut, and G. Gottschalk. 1986. Utilization of methanol plus hydrogen by Methanosarcina barkeri for methanogenesis and growth. Appl. Environ. Microbiol. 52:269-274.
    • (1986) Appl. Environ. Microbiol , vol.52 , pp. 269-274
    • Müller, V.1    Blaut, M.2    Gottschalk, G.3
  • 37
    • 0028887837 scopus 로고
    • Taxonomic Note: Implementation of the provisional status Candidatus for incompletely described procaryotes
    • Murray, R.G.E., and E. Stackebrandt. 1995. Taxonomic Note: Implementation of the provisional status Candidatus for incompletely described procaryotes. Int. J. Syst. Bacteriol. 45:186-187.
    • (1995) Int. J. Syst. Bacteriol , vol.45 , pp. 186-187
    • Murray, R.G.E.1    Stackebrandt, E.2
  • 38
    • 0024490353 scopus 로고
    • Isolation and characterization of an anaerobic, cellulolytic bacterium, Clostridium celerecrescens sp. nov
    • Palop, M.L.L., S. Valles, F. Piñaga, and A. Flors. 1989. Isolation and characterization of an anaerobic, cellulolytic bacterium, Clostridium celerecrescens sp. nov. Int. J. Syst. Bacteriol. 39:68-71.
    • (1989) Int. J. Syst. Bacteriol , vol.39 , pp. 68-71
    • Palop, M.L.L.1    Valles, S.2    Piñaga, F.3    Flors, A.4
  • 39
    • 84870794077 scopus 로고    scopus 로고
    • Methanoplasmatales," thermoplasmatales-related archaea in termite guts and other environments, are the seventh order of methanogens
    • Paul, K., J.O. Nonoh, L. Mikulski, and A. Brune. 2012. Methanoplasmatales," thermoplasmatales-related archaea in termite guts and other environments, are the seventh order of methanogens. Appl. Environ. Microbiol. 78:8245-8253.
    • (2012) Appl. Environ. Microbiol , vol.78 , pp. 8245-8253
    • Paul, K.1    Nonoh, J.O.2    Mikulski, L.3    Brune, A.4
  • 40
    • 0033823565 scopus 로고    scopus 로고
    • Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent
    • Reysenbach, A.L., K. Longnecker, and J. Kirshtein. 2000. Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent. Appl. Environ. Microbiol. 66:3798-3806.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 3798-3806
    • Reysenbach, A.L.1    Longnecker, K.2    Kirshtein, J.3
  • 41
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist, F., and J.P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 42
    • 0023375195 scopus 로고
    • A neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. A neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 43
    • 33749572498 scopus 로고    scopus 로고
    • Archaeal population on supporting material in methanogenic packed-bed reactor
    • Sasaki, K., S. Haruta, Y. Ueno, M. Ishii, and Y. Igarashi. 2006a. Archaeal population on supporting material in methanogenic packed-bed reactor. J. Biosci. Bioeng. 102:244-246.
    • (2006) J. Biosci. Bioeng , vol.102 , pp. 244-246
    • Sasaki, K.1    Haruta, S.2    Ueno, Y.3    Ishii, M.4    Igarashi, Y.5
  • 44
    • 33745727507 scopus 로고    scopus 로고
    • Microbial community in methanogenic packed-bed reactor successfully operating at short hydraulic retention time
    • Sasaki, K., S. Haruta, M. Tatara, A. Yamazawa, Y. Ueno, M. Ishii, and Y. Igarashi. 2006b. Microbial community in methanogenic packed-bed reactor successfully operating at short hydraulic retention time. J. Biosci. Bioeng. 101:271-273.
    • (2006) J. Biosci. Bioeng , vol.101 , pp. 271-273
    • Sasaki, K.1    Haruta, S.2    Tatara, M.3    Yamazawa, A.4    Ueno, Y.5    Ishii, M.6    Igarashi, Y.7
  • 45
    • 34547456501 scopus 로고    scopus 로고
    • Microbial population in the biomass adhering to supporting material in a packed-bed reactor degrading organic solid waste
    • Sasaki, K., S. Haruta, Y. Ueno, M. Ishii, and Y. Igarashi. 2007. Microbial population in the biomass adhering to supporting material in a packed-bed reactor degrading organic solid waste. Appl. Microbiol. Biotechnol. 75:941-952.
    • (2007) Appl. Microbiol. Biotechnol , vol.75 , pp. 941-952
    • Sasaki, K.1    Haruta, S.2    Ueno, Y.3    Ishii, M.4    Igarashi, Y.5
  • 46
    • 78650979528 scopus 로고    scopus 로고
    • Methanogenic pathway and community structure in a thermophilic anaerobic digestion process of organic solid waste
    • Sasaki, D., T. Hori, S. Haruta, Y. Ueno, M. Ishii, and Y. Igarashi. 2011. Methanogenic pathway and community structure in a thermophilic anaerobic digestion process of organic solid waste. J. Biosci. Bioeng. 111:41-46.
    • (2011) J. Biosci. Bioeng , vol.111 , pp. 41-46
    • Sasaki, D.1    Hori, T.2    Haruta, S.3    Ueno, Y.4    Ishii, M.5    Igarashi, Y.6
  • 47
    • 0029681421 scopus 로고    scopus 로고
    • Picrophilus oshimae and Picrophilus torridus fam. nov., gen. nov., sp. nov., two species of hyperacidophilic, thermophilic, heterotrophic, aerobic archaea
    • Schleper, C., G. Pühler, H.P. Klenk, and W. Zillig. 1996. Picrophilus oshimae and Picrophilus torridus fam. nov., gen. nov., sp. nov., two species of hyperacidophilic, thermophilic, heterotrophic, aerobic archaea. Int. J. Syst. Bacteriol. 46:814-816.
    • (1996) Int. J. Syst. Bacteriol , vol.46 , pp. 814-816
    • Schleper, C.1    Pühler, G.2    Klenk, H.P.3    Zillig, W.4
  • 48
    • 0019295321 scopus 로고
    • Microbial methanol formation: A major end product of pectin metabolism
    • Schink, B., and J.G. Zeikus. 1980. Microbial methanol formation: a major end product of pectin metabolism. Curr. Microbiol. 4:387-389.
    • (1980) Curr. Microbiol , vol.4 , pp. 387-389
    • Schink, B.1    Zeikus, J.G.2
  • 49
    • 0025860931 scopus 로고
    • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
    • Schmidt, T.M., E.F. DeLong, and N.R. Pace. 1991. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J. Bacteriol. 173:4371-4378.
    • (1991) J. Bacteriol , vol.173 , pp. 4371-4378
    • Schmidt, T.M.1    Delong, E.F.2    Pace, N.R.3
  • 50
    • 38049087631 scopus 로고    scopus 로고
    • Tetraether membrane lipids of Candidatus "Aciduliprofundum boonei", a cultivated obligate thermoacidophilic euryarchaeote from deep-sea hydrothermal vents
    • Shouten, S., M. Baas, E.C. Hopmans, A.-L. Reysenbach, and J.S.S. Damsé. 2008. Tetraether membrane lipids of Candidatus "Aciduliprofundum boonei", a cultivated obligate thermoacidophilic euryarchaeote from deep-sea hydrothermal vents. Extremophiles 12:119-124.
    • (2008) Extremophiles , vol.12 , pp. 119-124
    • Shouten, S.1    Baas, M.2    Hopmans, E.C.3    Reysenbach, A.-L.4    Damsé, J.S.S.5
  • 51
    • 0034519180 scopus 로고    scopus 로고
    • Methanomicrococcus blatticola gen. nov., sp. nov., a methanol-and methylamine-reducing methanogen from the hindgut of the cockroach Periplaneta Americana
    • Sprenger, W.W., M.C. van Belzen, J. Rosenberg, J.H.P. Hackstein, and J.T. Keltjens. 2000. Methanomicrococcus blatticola gen. nov., sp. nov., a methanol-and methylamine-reducing methanogen from the hindgut of the cockroach Periplaneta Americana. Int. J. Syst. Evol. Microbiol. 50:1989-1999.
    • (2000) Int. J. Syst. Evol. Microbiol , vol.50 , pp. 1989-1999
    • Sprenger, W.W.1    van Belzen, M.C.2    Rosenberg, J.3    Hackstein, J.H.P.4    Keltjens, J.T.5
  • 52
    • 25144465580 scopus 로고    scopus 로고
    • The energy metabolism of Methanomicrococcus blatticola: Physiological and biochemical aspects
    • Sprenger, W.W., J.H.P. Hackstein, and J.T. Keltjens. 2005. The energy metabolism of Methanomicrococcus blatticola: physiological and biochemical aspects. Antonie van Leeuwenhoek. 87:289-299.
    • (2005) Antonie Van Leeuwenhoek , vol.87 , pp. 289-299
    • Sprenger, W.W.1    Hackstein, J.H.P.2    Keltjens, J.T.3
  • 53
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes
    • In E. Stackbrandt and M. Goodfellow (ed.), John Wiley & Sons, New York
    • Stahl, D.A., and R. Amann. 1991. Development and application of nucleic acid probes, p. 205-248. In E. Stackbrandt and M. Goodfellow (ed.), Nucleic Acid Techniques in Bacterial Systematics. John Wiley & Sons, New York.
    • (1991) Nucleic Acid Techniques In Bacterial Systematics , pp. 205-248
    • Stahl, D.A.1    Amann, R.2
  • 54
    • 0035849668 scopus 로고    scopus 로고
    • Phylogenetic analysis of archaeal 16S rRNA libraries from the rumen suggests the existence of a novel group of archaea not associated with known methanogens
    • Tajima, K., T. Nagamine, H. Matsui, M. Nakamura, and R.I. Aminov. 2001. Phylogenetic analysis of archaeal 16S rRNA libraries from the rumen suggests the existence of a novel group of archaea not associated with known methanogens. FEMS Microbiol. Lett. 200:67-72.
    • (2001) FEMS Microbiol. Lett , vol.200 , pp. 67-72
    • Tajima, K.1    Nagamine, T.2    Matsui, H.3    Nakamura, M.4    Aminov, R.I.5
  • 55
    • 0344035670 scopus 로고    scopus 로고
    • Genetic diversity of archaea in deep-sea hydrothermal vent environments
    • Takai, K., and K. Horikoshi. 1999. Genetic diversity of archaea in deep-sea hydrothermal vent environments. Genetics 152:1285-1297.
    • (1999) Genetics , vol.152 , pp. 1285-1297
    • Takai, K.1    Horikoshi, K.2
  • 56
    • 17444372781 scopus 로고    scopus 로고
    • Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques
    • Tamaki, H., Y. Sekiguchi, S. Hanada, K. Nakamura, N. Nomura, M. Matsumura, and Y. Kamagata. 2005. Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques. Appl. Environ. Microbiol. 71:2162-2169.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 2162-2169
    • Tamaki, H.1    Sekiguchi, Y.2    Hanada, S.3    Nakamura, K.4    Nomura, N.5    Matsumura, M.6    Kamagata, Y.7
  • 57
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal_X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tool
    • Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The Clustal_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tool. Nucleic. Acids Res. 24:4876-4882.
    • (1997) Nucleic. Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 58
    • 0020662646 scopus 로고
    • Isolation and characterization of Methanococcus mazei strain MC3
    • Touzel, J.P., and G. Albagnac. 1983. Isolation and characterization of Methanococcus mazei strain MC3. FEMS Microbiol. Lett. 16:241-245.
    • (1983) FEMS Microbiol. Lett , vol.16 , pp. 241-245
    • Touzel, J.P.1    Albagnac, G.2
  • 60
    • 10644224511 scopus 로고
    • Formation of methane by bacterial extracts
    • Wolin, E.A., M.J. Wolin, and R.S. Wolfe. 1963. Formation of methane by bacterial extracts. J. Biol. Chem. 238:2882-2886.
    • (1963) J. Biol. Chem , vol.238 , pp. 2882-2886
    • Wolin, E.A.1    Wolin, M.J.2    Wolfe, R.S.3
  • 61
    • 84858277012 scopus 로고    scopus 로고
    • Identity and diversity of archaeal communities during anaerobic co-digestion of chicken feathers and other animal wastes
    • Xia, Y., D.I. Masse, T.A. McAllister, Y. Kong, R. Seviour, and C. Beaulieu. 2012. Identity and diversity of archaeal communities during anaerobic co-digestion of chicken feathers and other animal wastes. Bioresour. Technol. 110:111-119.
    • (2012) Bioresour. Technol , vol.110 , pp. 111-119
    • Xia, Y.1    Masse, D.I.2    McAllister, T.A.3    Kong, Y.4    Seviour, R.5    Beaulieu, C.6
  • 62
    • 10644234817 scopus 로고    scopus 로고
    • Mechanistic approach to the problem of hybridization efficiency in fluorescent in situ hybridization
    • Yulmaz, J.S., and D.R. Noguera. 2004. Mechanistic approach to the problem of hybridization efficiency in fluorescent in situ hybridization. Appl. Environ. Microbiol. 70:7126-7139.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 7126-7139
    • Yulmaz, J.S.1    Noguera, D.R.2


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