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Volumn , Issue , 2009, Pages 65-72

A graph-theoretic model based on primary and predicted secondary structure reveals functional specificity in a set of plant secondary product UDP-glucosyltransferases

Author keywords

[No Author keywords available]

Indexed keywords

FUNCTIONAL SPECIFICITY; GLUCOSYLTRANSFERASES; GRAPH-THEORETIC MODELS; PRIMARY SEQUENCES; PRIMARY STRUCTURES; SECONDARY METABOLITES; SECONDARY STRUCTURES; SUBSTRATE SPECIFICITY;

EID: 84878144331     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (2)

References (23)
  • 1
    • 15544364507 scopus 로고    scopus 로고
    • Genomics-based selection and functional characterization of triterpene glycosyl transferases from the modellegume medicago truncatula
    • Achnine, L., Huhman, D.V., Farag, M.A., Sumner, L.W., Blount, J.W., and Dixon, R.A. Genomics-based selection and functional characterization of triterpene glycosyl transferases from the modellegume Medicago truncatula. Plant J. 41, 2005, pp. 875-887.
    • (2005) Plant J , vol.41 , pp. 875-887
    • Achnine, L.1    Huhman, D.V.2    Farag, M.A.3    Sumner, L.W.4    Blount, J.W.5    Dixon, R.A.6
  • 2
    • 84878156887 scopus 로고    scopus 로고
    • Exploring the extremes of sequence/structure space with ensemble fold recognition in the program PHYRE, Proteins: Structure, function
    • Bennett-Lovsey, R., A. Herbert, M. Steinberg, and L.A. Kelley. Exploring the extremes of sequence/structure space with ensemble fold recognition in the program PHYRE. Proteins: structure, function, bioinformatics 70(3), 2008.
    • (2008) Bioinformatics , vol.70 , Issue.3
    • Bennett-Lovsey, R.1    Herbert, A.2    Steinberg, M.3    Kelley, L.A.4
  • 4
    • 46249099576 scopus 로고    scopus 로고
    • Characterization and prediction of residues determining protein functional specificity
    • Capra J and M. Singh, Characterization and prediction of residues determining protein functional specificity, Bioinformatics, 24, 2008, pp. 1473-1480.
    • (2008) Bioinformatics , vol.24 , pp. 1473-1480
    • Capra, J.1    Singh, M.2
  • 5
    • 0029587166 scopus 로고
    • A method to predict functional residues in proteins
    • Casari, G., A method to predict functional residues in proteins, Nat. Struct. Biol. 2, 1995, pp. 171-178.
    • (1995) Nat. Struct. Biol. , vol.2 , pp. 171-178
    • Casari, G.1
  • 6
    • 20744444583 scopus 로고    scopus 로고
    • Determining functional specificity from protein sequences
    • Donald J. and E. Shakhnovich, Determining functional specificity from protein sequences, Bioinformatics, 21, 2005, pp. 2629-2635.
    • (2005) Bioinformatics , vol.21 , pp. 2629-2635
    • Donald, J.1    Shakhnovich, E.2
  • 7
    • 0033230289 scopus 로고    scopus 로고
    • Flavanone-7-oglucosyltransferase activity from petunia hybrida
    • Durren, R. and C.A. McIntosh, Flavanone-7-OGlucosyltransferase Activity from Petunia hybrida. Phytochemistry 52: 1999, pp.793-798.
    • (1999) Phytochemistry , vol.52 , pp. 793-798
    • Durren, R.1    McIntosh, C.A.2
  • 8
    • 0034644783 scopus 로고    scopus 로고
    • Analysis and prediction of functional sub-types from protein sequence alignments
    • Hannenhalli, S. and R Russell, Analysis and prediction of functional sub-types from protein sequence alignments, J. Mol. Biol., 303, 2000, pp. 61-76.
    • (2000) J. Mol. Biol. , vol.303 , pp. 61-76
    • Hannenhalli, S.1    Russell, R.2
  • 9
    • 33645463046 scopus 로고    scopus 로고
    • A quantitative analysis of secondary RNA structure using domination based parameters on trees
    • Haynes, T, Knisley, D., E. Seier and Y. Zou, A Quantitative Analysis of Secondary RNA Structure Using Domination Based Parameters on Trees, BMC Bioinformatics 7: (208), 2006.
    • (2006) BMC Bioinformatics , vol.7 , Issue.208
    • Haynes, T.1    Knisley, D.2    Seier, E.3    Zou, Y.4
  • 10
    • 0034079353 scopus 로고    scopus 로고
    • Cloning and expression of UDP-glucose: Flavonoid 7-oglucosyltransferase from hairy root cultures of scutellatia baicalensis
    • Hirotani, M., R. Kuroda, H. Suzuki, and T. oshikawa. Cloning and expression of UDP-glucose: flavonoid 7-Oglucosyltransferase from hairy root cultures of Scutellatia baicalensis. Planta 210, 2000, pp. 1006-1013.
    • (2000) Planta , vol.210 , pp. 1006-1013
    • Hirotani, M.1    Kuroda, R.2    Suzuki, H.3    Oshikawa, T.4
  • 11
    • 1642452921 scopus 로고    scopus 로고
    • Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families
    • Kalinina, O., Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families, Prot. Sci. 13, 2003, pp. 443-456.
    • (2003) Prot. Sci. , vol.13 , pp. 443-456
    • Kalinina, O.1
  • 12
    • 54349122608 scopus 로고    scopus 로고
    • Using a neural network to identify secondary RNA structures quantified by graphical invariants
    • Knisley D. and Knisley J., Haynes T, Using a Neural Network to Identify Secondary RNA Structures Quantified by Graphical Invariants, Communications in Mathematical and Computer Chemistry, 60:2, 2008, pp. 277-290.
    • (2008) Communications in Mathematical and Computer Chemistry , vol.60 , Issue.2 , pp. 277-290
    • Knisley, D.1    Knisley, J.2    Haynes, T.3
  • 14
    • 34250172749 scopus 로고    scopus 로고
    • Crystal structure of medicago trunculata UGT85H2 - insights into the structural basis of a multifunctional (ISO)falconoid glycosyl transferase
    • Li, L., L.V. Modolo, L.L. Escamilla-Trevino, L. Achnine, R.A. Dixon, and X. Wang. Crystal structure of Medicago trunculata UGT85H2 - insights into the structural basis of a multifunctional (iso)flavonoid glycosyltransferase. J Molec Biol 370, 2007, pp. 951-963.
    • (2007) J Molec Biol , vol.370 , pp. 951-963
    • Li, L.1    Modolo, L.V.2    Escamilla-Trevino, L.L.3    Achnine, L.4    Dixon, R.A.5    Wang, X.6
  • 15
    • 0029913807 scopus 로고    scopus 로고
    • An evolutionary trace method defines binding surfaces common to protein families
    • Lictharge, O, An evolutionary trace method defines binding surfaces common to protein families, J. Mol. Biol. 257, 1996, pp. 342-358.
    • (1996) J. Mol. Biol. , vol.257 , pp. 342-358
    • Lictharge, O.1
  • 16
    • 0027764344 scopus 로고
    • Protein sequence alignments: A strategy for the hierarchical analysis of residue conservation
    • Livingston O. and G. Barton, Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation, Comput. Appl. Biosci. 9, 1993, pp. 745-756.
    • (1993) Comput. Appl. Biosci. , vol.9 , pp. 745-756
    • Livingston, O.1    Barton, G.2
  • 17
    • 0025178922 scopus 로고
    • Flavanone-specific 7-o-glucosyltransferase activity in citrus paradisi seedlings: Purification and characterization
    • McIntosh, C., L. Latchinian, and R.L. Mansell. Flavanone-specific 7-O-glucosyltransferase activity in Citrus paradisi seedlings: purification and characterization. Arch Biochem Biophys 282, 1990, pp. 50-57.
    • (1990) Arch Biochem Biophys , vol.282 , pp. 50-57
    • McIntosh, C.1    Latchinian, L.2    Mansell, R.L.3
  • 18
    • 84878125470 scopus 로고    scopus 로고
    • Identification, recombinant expression, and biochemical characterization of a flavonol-3-o-glucosyltransferase clone from
    • Submitted
    • Owens, D.K. and C.A. McIntosh. Identification, recombinant expression, and biochemical characterization of a flavonol-3-O-glucosyltransferase clone from Citrus paradisi. (Submitted).
    • Citrus Paradisi
    • Owens, D.K.1    McIntosh, C.A.2
  • 20
    • 70349339255 scopus 로고    scopus 로고
    • Cloning, expression and characterization of a putative flavonoid glucosyltransferase from grapefruit (citrus paradisi) leaves
    • B.J. Nicolau and E.S. Wurtele (eds), Springer, Dordrecht
    • Roy Sarkar, T., C.L. Strong, M.B. Sibhatu, L.M. Pike, and C.A. McIntosh. Cloning, expression and characterization of a putative flavonoid glucosyltransferase from grapefruit (Citrus paradisi) leaves. In, B.J. Nicolau and E.S. Wurtele (eds), Concepts in Plant Metabolomics, Springer, Dordrecht, pp. 247-257.
    • Concepts in Plant Metabolomics , pp. 247-257
    • Roy Sarkar, T.1    Strong, C.L.2    Sibhatu, M.B.3    Pike, L.M.4    McIntosh, C.A.5
  • 21
    • 33645281589 scopus 로고    scopus 로고
    • Crystal structures of a multi funcional triterpene/flavonoid glycosyl transferase from medicago trunculata
    • Shao, A., X. He, L. Achnine, J.W. Blount, R.A. Dixon, and X. Wang. Crystal Structures of a Multifuncional Triterpene/Flavonoid Glycosyltransferase from Medicago trunculata. Plant Cell 17, 2005, pp. 3141- 3157.
    • (2005) Plant Cell , vol.17 , pp. 3141-3157
    • Shao, A.1    He, X.2    Achnine, L.3    Blount, J.W.4    Dixon, R.A.5    Wang, X.6
  • 22
    • 0031574072 scopus 로고    scopus 로고
    • The clustalx windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and, D.G. Higgins The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Res. 24, 1997, pp. 4876-4882.
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 23
    • 0033799536 scopus 로고    scopus 로고
    • Glycosyl transferases in plant natural product synthesis: Characterization of a supergene family
    • Vogt, T., and Jones, P. Glycosyltransferases in plant natural product synthesis: Characterization of a supergene family. Trends Plant Sci. 5, 2000, pp. 380-386.
    • (2000) Trends Plant Sci , vol.5 , pp. 380-386
    • Vogt, T.1    Jones, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.