Biomolecular invariants of amino acid trees

International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics 2008, BCBGC 2008

Volumn , Issue , 2008, Pages 106-110

  Knisley, Debra ^a   Knisley, Jeff ^a   Roberts, Leonard ^b  

^a EAST TENNESSEE STATE UNIVERSITY   (United States)

^b KENTUCKY STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIO-MOLECULAR; COMPLETE GRAPHS; DESCRIPTORS; EUCLIDEAN DISTANCE; GRAPH-THEORETIC; MEASURING SIMILARITIES; MINIMUM DISTANCE;

AMINO ACIDS; BIOINFORMATICS; FORESTRY;

TREES (MATHEMATICS);

EID: 84878158884     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (10)

1. Anderson NH, Cao B, Chen C, Peptide/protein structure analysis using the chemical shift index method: upfield alpha-CH values reveal dynamic helices and αL sites, Biochem and Biophys. Res. Comm. 184, 1008-1014, 1992.
2. Argos P, Rao M, Hargrove P, Structural Prediction of Membrane-Bound Proteins, E. Jour. of Biochemistry 128 565-575, 1982.
3. Betts M, Russell R, Amino acid properties and consequences of substitutions, Bioinformatics for Geneticists, Barnes and Gray eds, Wiley, 2003.
4. Gan, Fera, Zorn, Shiffeldrim, Tang, Laserson, Kim and Schlick, RAG: RNA-As-Graphs Database, Bioinformatics 20, 1285-1291, 2004.
5. Gan, Pasquali and Schlick, Exploring the repertoire of RNA secondary motifs using graph theory with implications for RNA design, Nucleic Acids Research 31 2926-2942, 2003.
6. Haynes T, Hedetneimi S and Slater R, Domination in Graphs, Marcel Dekker, 1998.
7. Haynes T, Knisley D and Knisley J, Using a Neural Network to Identify Secondary RNA Structures Quantified by Graphical Invariants, MATCH: Communications in Mathematical and Computer Chemistry 60, 2008.
8. Haynes T, Knisley D, Seier E and Zou Y, A Quantitative Analysis of Secondary RNA Structure using Domination based Parameters on Trees, BMC Bioinformatic 7, 2006.
9. Kawashima S and Kanehisa M, AAindex Database, Nucleic Acids Research, 28 (http:www.genome.ad.jp/aaindex/)2000.
10. Mitaku S, Hirokawa T and Tsuji T, Amphiphilicity index of polar amino acids as an aid in the characterization of amino aci preference, Bioinformatics 4 608-618, 2002.