-
1
-
-
0032146829
-
Differential toxicity and environmental fates of hexachlorocyclohexane isomers
-
Willett KL, Ulrich EM, Hites RA. 1998. Differential toxicity and environmental fates of hexachlorocyclohexane isomers. Environ. Sci. Technol. 32:2197-2207.
-
(1998)
Environ. Sci. Technol.
, vol.32
, pp. 2197-2207
-
-
Willett, K.L.1
Ulrich, E.M.2
Hites, R.A.3
-
2
-
-
0033572957
-
Factors influencing the distribution of lindane and other hexachlorocyclohexanes in the environment
-
Walker K, Vallero DA, Lewis RG. 1999. Factors influencing the distribution of lindane and other hexachlorocyclohexanes in the environment. Environ. Sci. Technol. 33:4373-4378.
-
(1999)
Environ. Sci. Technol.
, vol.33
, pp. 4373-4378
-
-
Walker, K.1
Vallero, D.A.2
Lewis, R.G.3
-
3
-
-
0031712774
-
Degradation of α, β, γ and δ-hexachlorocyclohexanes by Sphingomonas paucimobilis
-
Johri AK, Dua M, Tuteja D, Saxena R, Saxena DM, Lal R. 1998. Degradation of α, β, γ and δ-hexachlorocyclohexanes by Sphingomonas paucimobilis. Biotechnol. Lett. 20:885-887.
-
(1998)
Biotechnol. Lett.
, vol.20
, pp. 885-887
-
-
Johri, A.K.1
Dua, M.2
Tuteja, D.3
Saxena, R.4
Saxena, D.M.5
Lal, R.6
-
4
-
-
0033830892
-
Degradation of hexachlorocyclohexane (HCH; α, β, γ and δ) by Bacillus circulans and Bacillus brevis isolated from soil contaminated with HCH
-
Gupta A, Kaushik CP, Kaushik A. 2000. Degradation of hexachlorocyclohexane (HCH; α, β, γ and δ) by Bacillus circulans and Bacillus brevis isolated from soil contaminated with HCH. Soil Biol. Biochem. 32:1803-1805.
-
(2000)
Soil Biol. Biochem.
, vol.32
, pp. 1803-1805
-
-
Gupta, A.1
Kaushik, C.P.2
Kaushik, A.3
-
5
-
-
0034992246
-
Degradation of hexachlorocyclohexane isomers by two strains of Alcaligenes faecalis isolated from a contaminated site
-
Gupta A, Kaushik CP, Kaushik A. 2001. Degradation of hexachlorocyclohexane isomers by two strains of Alcaligenes faecalis isolated from a contaminated site. Bull. Environ. Contam. Toxicol. 66:794-800.
-
(2001)
Bull. Environ. Contam. Toxicol.
, vol.66
, pp. 794-800
-
-
Gupta, A.1
Kaushik, C.P.2
Kaushik, A.3
-
6
-
-
0242413672
-
Catalytic mechanism of the haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26
-
Prokop Z, Monincová M, Chaloupková R, Klvaňa M, Nagata Y, Janssen DB, Damborský J. 2003. Catalytic mechanism of the haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26. J. Biol. Chem. 278: 45094-45100.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 45094-45100
-
-
Prokop, Z.1
Monincová, M.2
Chaloupková, R.3
Klvaňa, M.4
Nagata, Y.5
Janssen, D.B.6
Damborský, J.7
-
7
-
-
34548329536
-
Degradation of β-hexachlorocyclohexane by haloalkane dehalogenase LinB from γ-hexachlorocyclohexane-utilizing bacterium Sphingobium
-
Ito M, Prokop Z, Klvaňa M, Otsubo Y, Tsuda M, Damborský J, Nagata Y. 2007. Degradation of β-hexachlorocyclohexane by haloalkane dehalogenase LinB from γ-hexachlorocyclohexane-utilizing bacterium Sphingobium sp. MI1205. Arch. Microbiol. 188:313-325.
-
(2007)
sp.MI1205. Arch. Microbiol.
, vol.188
, pp. 313-325
-
-
Ito, M.1
Prokop, Z.2
Klvaňa, M.3
Otsubo, Y.4
Tsuda, M.5
Damborský, J.6
Nagata, Y.7
-
8
-
-
33845753491
-
A gene linB2 responsible for the conversion of β-HCH and 2,3,4,5,6-pentachlorocyclohexanol in Sphingomonas sp
-
Wu J, Hong Q, Han P, He J, Li S. 2007. A gene linB2 responsible for the conversion of β-HCH and 2,3,4,5,6-pentachlorocyclohexanol in Sphingomonas sp. BHC-A. Appl. Microbiol. Biotechnol. 73:1097-1105.
-
(2007)
BHC-A. Appl. Microbiol. Biotechnol.
, vol.73
, pp. 1097-1105
-
-
Wu, J.1
Hong, Q.2
Han, P.3
He, J.4
Li, S.5
-
9
-
-
33748799126
-
Haloalkane dehalogenase LinB is responsible for β- and δ-hexachlorocyclohexane transformation in Sphingobium indicum B90A
-
Sharma P, Raina V, Kumari R, Malhotra S, Dogra C, Kumari H, Kohler HP, Buser HR, Holliger C, Lal R. 2006. Haloalkane dehalogenase LinB is responsible for β- and δ-hexachlorocyclohexane transformation in Sphingobium indicum B90A. Appl. Environ. Microbiol. 72:5720-5727.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5720-5727
-
-
Sharma, P.1
Raina, V.2
Kumari, R.3
Malhotra, S.4
Dogra, C.5
Kumari, H.6
Kohler, H.P.7
Buser, H.R.8
Holliger, C.9
Lal, R.10
-
10
-
-
17444418325
-
Degradation of β-hexachlorocyclohexane by haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26
-
Nagata Y, Prokop Z, Sato Y, Jerabek P, Kumar A, Ohtsubo Y, Tsuda M, Damborský J. 2005. Degradation of β-hexachlorocyclohexane by haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26. Appl. Environ. Microbiol. 71:2183-2185.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 2183-2185
-
-
Nagata, Y.1
Prokop, Z.2
Sato, Y.3
Jerabek, P.4
Kumar, A.5
Ohtsubo, Y.6
Tsuda, M.7
Damborský, J.8
-
11
-
-
0034700262
-
Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26
-
Marek J, Vévodová J, Smatanová IK, Nagata Y, Svensson LA, Newman J, Takagi M, Damborský J. 2000. Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26. Biochemistry 39: 14082-14086.
-
(2000)
Biochemistry
, vol.39
, pp. 14082-14086
-
-
Marek, J.1
Vévodová, J.2
Smatanová, I.K.3
Nagata, Y.4
Svensson, L.A.5
Newman, J.6
Takagi, M.7
Damborský, J.8
-
12
-
-
0037117757
-
Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition
-
Oakley AJ, Prokop Z, Boháč M, Kmuniček J, Jedlička T, Monincová M, Kuta-Smatanová I, Nagata Y, Damborský J, Wilce MC. 2002. Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition. Biochemistry 41:4847-4855.
-
(2002)
Biochemistry
, vol.41
, pp. 4847-4855
-
-
Oakley, A.J.1
Prokop, Z.2
Boháč, M.3
Kmuniček, J.4
Jedlička, T.5
Monincová, M.6
Kuta-Smatanová, I.7
Nagata, Y.8
Damborský, J.9
Wilce, M.C.10
-
13
-
-
0041823656
-
Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates
-
Streltsov VA, Prokop Z, Damborský J, Nagata Y, Oakley A, Wilce MC. 2003. Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates. Biochemistry 42:10104-10112.
-
(2003)
Biochemistry
, vol.42
, pp. 10104-10112
-
-
Streltsov, V.A.1
Prokop, Z.2
Damborský, J.3
Nagata, Y.4
Oakley, A.5
Wilce, M.C.6
-
14
-
-
0942301386
-
Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 Å resolution: dynamics of catalytic residues.
-
Oakley AJ, Klvaňa M, Otyepka M, Nagata Y, Wilce MC, Damborský J. 2004. Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 Å resolution: dynamics of catalytic residues. Biochemistry 43:870-878.
-
(2004)
Biochemistry
, vol.43
, pp. 870-878
-
-
Oakley, A.J.1
Klvaňa, M.2
Otyepka, M.3
Nagata, Y.4
Wilce, M.C.5
Damborský, J.6
-
15
-
-
13044312731
-
Crystallization and preliminary X-ray diffraction analysis of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26
-
Smatanová I, Nagata Y, Svensson LA, Takagi M, Marek J. 1999. Crystallization and preliminary X-ray diffraction analysis of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26. Acta Crystallogr.D 55:1231-1233.
-
(1999)
Acta Crystallogr.D
, vol.55
, pp. 1231-1233
-
-
Smatanová, I.1
Nagata, Y.2
Svensson, L.A.3
Takagi, M.4
Marek, J.5
-
16
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
17
-
-
0000560808
-
MOLREP: an automated program for molecular replacement
-
Vagin A, Teplyakov A. 1997. MOLREP: an automated program for molecular replacement. J. Appl. Crystallogr. 30:1022-1025. 18. Emsley P, Cowtan K. 2004. Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60:2126-2132.
-
(1997)
J. Appl. Crystallogr.
, vol.30
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
18
-
-
13244281317
-
Coot: model-building tools for molecular graphics
-
Emsley P, Cowtan K. 2004. Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60:2126-2132.
-
(2004)
Acta Crystallogr. D
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
19
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov GN, Vagin AA, Dodson EJ. 1997. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D 53:240-255.
-
(1997)
Acta Crystallogr. D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
20
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
Perrakis A, Morris R, Lamzin VS. 1999. Automated protein model building combined with iterative structure refinement. Nat. Struct. Biol. 6:458-463.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
21
-
-
0037441653
-
Structure validation by Cα geometry: φ,ψ and Cβ deviation
-
Lovell SC, Davis IW, Arendall WB, III, de Bakker PI, Word JM, Prisant MG, Richardson JS, Richardson DC. 2003. Structure validation by Cα geometry: φ,ψ and Cβ deviation. Proteins 50:437-450.
-
(2003)
Proteins
, vol.50
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall, W.B.3
De Bakker, P.I.4
Word, J.M.5
Prisant, M.G.6
Richardson, J.S.7
Richardson, D.C.8
-
22
-
-
0030921160
-
Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3
-
Mendes P. 1997. Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3. Trends Biochem. Sci. 22:361-363.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 361-363
-
-
Mendes, P.1
-
24
-
-
0014432781
-
Solvent content of protein crystals
-
Matthews BW. 1968. Solvent content of protein crystals. J. Mol. Biol. 33:491-497.
-
(1968)
J. Mol. Biol.
, vol.33
, pp. 491-497
-
-
Matthews, B.W.1
-
25
-
-
0027280086
-
Refined X-ray structures of haloalkane dehalogenase at pH 6.2 and pH 8.2 and implications for the reaction mechanism
-
Verschueren KH, Franken SM, Rozeboom HJ, Kalk KH, Dijkstra BW. 1993. Refined X-ray structures of haloalkane dehalogenase at pH 6.2 and pH 8.2 and implications for the reaction mechanism. J. Mol. Biol. 232: 856-872.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 856-872
-
-
Verschueren, K.H.1
Franken, S.M.2
Rozeboom, H.J.3
Kalk, K.H.4
Dijkstra, B.W.5
-
26
-
-
0033534177
-
Haloalkane dehalogenases: structure of a Rhodococcus enzyme
-
Newman J, Peat TS, Richard R, Kan L, Swanson PE, Affholter JA, Holmes IH, Schindler JF, Unkefer CJ, Terwilliger TC. 1999. Haloalkane dehalogenases: structure of a Rhodococcus enzyme. Biochemistry 38: 16105-16114.
-
(1999)
Biochemistry
, vol.38
, pp. 16105-16114
-
-
Newman, J.1
Peat, T.S.2
Richard, R.3
Kan, L.4
Swanson, P.E.5
Affholter, J.A.6
Holmes, I.H.7
Schindler, J.F.8
Unkefer, C.J.9
Terwilliger, T.C.10
-
27
-
-
33846264124
-
The identification of catalytic pentad inthe haloalkane dehalogenase DhmA from Mycobacterium avium N85: reaction mechanism and molecular evolution
-
Pavlová M, Klvaňa M, Jesenská A, Prokop Z, Konečná H, Sato T, Tsuda M, Nagata Y, Damborský J. 2007. The identification of catalytic pentad inthe haloalkane dehalogenase DhmA from Mycobacterium avium N85: reaction mechanism and molecular evolution. J. Struct. Biol. 157:384-392.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 384-392
-
-
Pavlová, M.1
Klvaňa, M.2
Jesenská, A.3
Prokop, Z.4
Konečná, H.5
Sato, T.6
Tsuda, M.7
Nagata, Y.8
Damborský, J.9
-
28
-
-
38549104102
-
X-ray crystal structure of Mycobacterium tuberculosis haloalkane dehalogenase Rv2579
-
Mazumdar PA, Hulecki JC, Cherney MM, Garen CR, James MN. 2008. X-ray crystal structure of Mycobacterium tuberculosis haloalkane dehalogenase Rv2579. Biochim. Biophys. Acta 1784:351-362.
-
(2008)
Biochim. Biophys. Acta
, vol.1784
, pp. 351-362
-
-
Mazumdar, P.A.1
Hulecki, J.C.2
Cherney, M.M.3
Garen, C.R.4
James, M.N.5
-
29
-
-
80052642327
-
Cloning, functional expression, biochemical characterization, and structural analysis of a haloalkane dehalogenase from Plesiocystis pacifica SIR-1
-
Hesseler M, Bogdanović X, Hidalgo A, Berenguer J, Palm GJ, Hinrichs W, Bornscheuer UT. 2011. Cloning, functional expression, biochemical characterization, and structural analysis of a haloalkane dehalogenase from Plesiocystis pacifica SIR-1. Appl. Microbiol. Biotechnol. 91:1049-1060.
-
(2011)
Appl. Microbiol. Biotechnol.
, vol.91
, pp. 1049-1060
-
-
Hesseler, M.1
Bogdanović, X.2
Hidalgo, A.3
Berenguer, J.4
Palm, G.J.5
Hinrichs, W.6
Bornscheuer, U.T.7
-
30
-
-
70349330482
-
Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate
-
Pavlová M, Klvaňa M, Prokop Z, Chaloupková R, Banás P, Otyepka M, Wade RC, Tsuda M, Nagata Y, Damborský J. 2009. Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate. Nat. Chem. Biol. 5:727-733.
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 727-733
-
-
Pavlová, M.1
Klvaňa, M.2
Prokop, Z.3
Chaloupková, R.4
Banás, P.5
Otyepka, M.6
Wade, R.C.7
Tsuda, M.8
Nagata, Y.9
Damborský, J.10
|