-
2
-
-
0036595008
-
Volatile organic compounds in some urban locations in United States
-
Mohamed M.F., Kang D., and Aneja V.P. Volatile organic compounds in some urban locations in United States. Chemosphere 47 (2002) 863-882
-
(2002)
Chemosphere
, vol.47
, pp. 863-882
-
-
Mohamed, M.F.1
Kang, D.2
Aneja, V.P.3
-
5
-
-
0032965170
-
Degradation of 1,2-dibromoethane by Mycobacterium sp. strain GP1
-
Poelarends G.J., van Hylckama Vlieg J.E., Marchesi J.R., Freitas Dos Santos L.M., and Janssen D.B. Degradation of 1,2-dibromoethane by Mycobacterium sp. strain GP1. J. Bacteriol. 181 (1999) 2050-2058
-
(1999)
J. Bacteriol.
, vol.181
, pp. 2050-2058
-
-
Poelarends, G.J.1
van Hylckama Vlieg, J.E.2
Marchesi, J.R.3
Freitas Dos Santos, L.M.4
Janssen, D.B.5
-
6
-
-
0343986273
-
Dehalogenation of haloalkanes by Mycobacterium tuberculosis H37Rv and other mycobacteria
-
Jesenska A., Sedlacek I., and Damborsky J. Dehalogenation of haloalkanes by Mycobacterium tuberculosis H37Rv and other mycobacteria. Appl. Environ. Microbiol. 66 (2000) 219-222
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 219-222
-
-
Jesenska, A.1
Sedlacek, I.2
Damborsky, J.3
-
7
-
-
0036325189
-
Cloning and expression of the haloalkane dehalogenase gene dhmA from Mycobacterium avium N85 and preliminary characterization of DhmA
-
Jesenska A., Bartos M., Czernekova V., Rychlik I., Pavlik I., and Damborsky J. Cloning and expression of the haloalkane dehalogenase gene dhmA from Mycobacterium avium N85 and preliminary characterization of DhmA. Appl. Environ. Microbiol. 68 (2002) 3724-3730
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3724-3730
-
-
Jesenska, A.1
Bartos, M.2
Czernekova, V.3
Rychlik, I.4
Pavlik, I.5
Damborsky, J.6
-
8
-
-
32044445515
-
Cloning, biochemical properties, and distribution of mycobacterial haloalkane dehalogenases
-
Jesenska A., Pavlova M., Strouhal M., Chaloupkova R., Tesinska I., Monincova M., Prokop Z., Bartos M., Pavlik I., Rychlik I., Mobius P., Nagata Y., and Damborsky J. Cloning, biochemical properties, and distribution of mycobacterial haloalkane dehalogenases. Appl. Environ. Microbiol. 71 (2005) 6736-6745
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 6736-6745
-
-
Jesenska, A.1
Pavlova, M.2
Strouhal, M.3
Chaloupkova, R.4
Tesinska, I.5
Monincova, M.6
Prokop, Z.7
Bartos, M.8
Pavlik, I.9
Rychlik, I.10
Mobius, P.11
Nagata, Y.12
Damborsky, J.13
-
9
-
-
0025734772
-
Crystal structure of haloalkane dehalogenase: an enzyme to detoxify halogenated alkanes
-
Franken S.M., Rozeboom H.J., Kalk K.H., and Dijkstra B.W. Crystal structure of haloalkane dehalogenase: an enzyme to detoxify halogenated alkanes. EMBO J. 10 (1991) 1297-1302
-
(1991)
EMBO J.
, vol.10
, pp. 1297-1302
-
-
Franken, S.M.1
Rozeboom, H.J.2
Kalk, K.H.3
Dijkstra, B.W.4
-
10
-
-
0033166637
-
Haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 refined at 1.15Å resolution
-
Ridder I.S., Rozeboom H.J., and Dijkstra B.W. Haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 refined at 1.15Å resolution. Acta. Crystallogr. D Biol. Crystallogr. 55 (1999) 1273-1290
-
(1999)
Acta. Crystallogr. D Biol. Crystallogr.
, vol.55
, pp. 1273-1290
-
-
Ridder, I.S.1
Rozeboom, H.J.2
Dijkstra, B.W.3
-
11
-
-
0033534177
-
Haloalkane dehalogenases: structure of a Rhodococcus enzyme
-
Newman J., Peat T.S., Richard R., Kan L., Swanson P.E., Affholter J.A., Holmes I.H., Schindler J.F., Unkefer C.J., and Terwilliger T.C. Haloalkane dehalogenases: structure of a Rhodococcus enzyme. Biochemistry 38 (1999) 16105-16114
-
(1999)
Biochemistry
, vol.38
, pp. 16105-16114
-
-
Newman, J.1
Peat, T.S.2
Richard, R.3
Kan, L.4
Swanson, P.E.5
Affholter, J.A.6
Holmes, I.H.7
Schindler, J.F.8
Unkefer, C.J.9
Terwilliger, T.C.10
-
12
-
-
0034700262
-
Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26
-
Marek J., Vevodova J., Smatanova I.K., Nagata Y., Svensson L.A., Newman J., Takagi M., and Damborsky J. Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26. Biochemistry 39 (2000) 14082-14086
-
(2000)
Biochemistry
, vol.39
, pp. 14082-14086
-
-
Marek, J.1
Vevodova, J.2
Smatanova, I.K.3
Nagata, Y.4
Svensson, L.A.5
Newman, J.6
Takagi, M.7
Damborsky, J.8
-
13
-
-
0942301386
-
Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95Å resolution: dynamics of catalytic residues
-
Oakley A.J., Klvana M., Otyepka M., Nagata Y., Wilce M.C., and Damborsky J. Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95Å resolution: dynamics of catalytic residues. Biochemistry 43 (2004) 870-878
-
(2004)
Biochemistry
, vol.43
, pp. 870-878
-
-
Oakley, A.J.1
Klvana, M.2
Otyepka, M.3
Nagata, Y.4
Wilce, M.C.5
Damborsky, J.6
-
14
-
-
0027337615
-
Crystallographic analysis of the catalytic mechanism of haloalkane dehalogenase
-
Verschueren K.H., Seljee F., Rozeboom H.J., Kalk K.H., and Dijkstra B.W. Crystallographic analysis of the catalytic mechanism of haloalkane dehalogenase. Nature 363 (1993) 693-698
-
(1993)
Nature
, vol.363
, pp. 693-698
-
-
Verschueren, K.H.1
Seljee, F.2
Rozeboom, H.J.3
Kalk, K.H.4
Dijkstra, B.W.5
-
15
-
-
0027280086
-
Refined X-ray structures of haloalkane dehalogenase at pH 6.2 and pH 8.2 and implications for the reaction mechanism
-
Verschueren K.H., Franken S.M., Rozeboom H.J., Kalk K.H., and Dijkstra B.W. Refined X-ray structures of haloalkane dehalogenase at pH 6.2 and pH 8.2 and implications for the reaction mechanism. J. Mol. Biol. 232 (1993) 856-872
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 856-872
-
-
Verschueren, K.H.1
Franken, S.M.2
Rozeboom, H.J.3
Kalk, K.H.4
Dijkstra, B.W.5
-
16
-
-
0027819259
-
Crystallographic and fluorescence studies of the interaction of haloalkane dehalogenase with halide ions. Studies with halide compounds reveal a halide binding site in the active site
-
Verschueren K.H., Kingma J., Rozeboom H.J., Kalk K.H., Janssen D.B., and Dijkstra B.W. Crystallographic and fluorescence studies of the interaction of haloalkane dehalogenase with halide ions. Studies with halide compounds reveal a halide binding site in the active site. Biochemistry 32 (1993) 9031-9037
-
(1993)
Biochemistry
, vol.32
, pp. 9031-9037
-
-
Verschueren, K.H.1
Kingma, J.2
Rozeboom, H.J.3
Kalk, K.H.4
Janssen, D.B.5
Dijkstra, B.W.6
-
17
-
-
0033024132
-
Identification of the catalytic triad in the haloalkane dehalogenase from Sphingomonas paucimobilis UT26
-
Hynkova K., Nagata Y., Takagi M., and Damborsky J. Identification of the catalytic triad in the haloalkane dehalogenase from Sphingomonas paucimobilis UT26. FEBS Lett. 446 (1999) 177-181
-
(1999)
FEBS Lett.
, vol.446
, pp. 177-181
-
-
Hynkova, K.1
Nagata, Y.2
Takagi, M.3
Damborsky, J.4
-
18
-
-
0038385475
-
Steady-state and pre-steady-state kinetic analysis of halopropane conversion by a Rhodococcus haloalkane dehalogenase
-
Bosma T., Pikkemaat M.G., Kingma J., Dijk J., and Janssen D.B. Steady-state and pre-steady-state kinetic analysis of halopropane conversion by a Rhodococcus haloalkane dehalogenase. Biochemistry 42 (2003) 8047-8053
-
(2003)
Biochemistry
, vol.42
, pp. 8047-8053
-
-
Bosma, T.1
Pikkemaat, M.G.2
Kingma, J.3
Dijk, J.4
Janssen, D.B.5
-
19
-
-
0031923751
-
Use of a Mycobacterium tuberculosis H37Rv bacterial artificial chromosome library for genome mapping, sequencing, and comparative genomics
-
Brosch R., Gordon S.V., Billault A., Garnier T., Eiglmeier K., Soravito C., Barrell B.G., and Cole S.T. Use of a Mycobacterium tuberculosis H37Rv bacterial artificial chromosome library for genome mapping, sequencing, and comparative genomics. Infect. Immun. 66 (1998) 2221-2229
-
(1998)
Infect. Immun.
, vol.66
, pp. 2221-2229
-
-
Brosch, R.1
Gordon, S.V.2
Billault, A.3
Garnier, T.4
Eiglmeier, K.5
Soravito, C.6
Barrell, B.G.7
Cole, S.T.8
-
20
-
-
0032949025
-
Identification of variable regions in the genomes of tubercle bacilli using bacterial artificial chromosome arrays
-
Gordon S.V., Brosch R., Billault A., Garnier T., Eiglmeier K., and Cole S.T. Identification of variable regions in the genomes of tubercle bacilli using bacterial artificial chromosome arrays. Mol. Microbiol. 32 (1999) 643-655
-
(1999)
Mol. Microbiol.
, vol.32
, pp. 643-655
-
-
Gordon, S.V.1
Brosch, R.2
Billault, A.3
Garnier, T.4
Eiglmeier, K.5
Cole, S.T.6
-
21
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
25
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
Perrakis A., Morris R., and Lamzin V.S. Automated protein model building combined with iterative structure refinement. Nat. Struct. Biol. 6 (1999) 458-463
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
26
-
-
0032790081
-
XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density
-
McRee D.E. XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density. J. Struct. Biol. 125 (1999) 156-165
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
28
-
-
0000243829
-
PROCHECK: a program to check the stereochemical quality of protein structures
-
Laskowski R.A., MacArthur M.W., Moss D.S., and Thornton J.M. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26 (1993) 283-291
-
(1993)
J. Appl. Cryst.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
29
-
-
14644406189
-
Quantitative analysis of substrate specificity of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26
-
Kmunicek J., Hynkova K., Jedlicka T., Nagata Y., Negri A., Gago F., Wade R.C., and Damborsky J. Quantitative analysis of substrate specificity of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26. Biochemistry 44 (2005) 3390-3401
-
(2005)
Biochemistry
, vol.44
, pp. 3390-3401
-
-
Kmunicek, J.1
Hynkova, K.2
Jedlicka, T.3
Nagata, Y.4
Negri, A.5
Gago, F.6
Wade, R.C.7
Damborsky, J.8
-
30
-
-
0037117757
-
Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition
-
Oakley A.J., Prokop Z., Bohac M., Kmunicek J., Jedlicka T., Monincova M., Kuta-Smatanova I., Nagata Y., Damborsky J., and Wilce M.C. Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition. Biochemistry 41 (2002) 4847-4855
-
(2002)
Biochemistry
, vol.41
, pp. 4847-4855
-
-
Oakley, A.J.1
Prokop, Z.2
Bohac, M.3
Kmunicek, J.4
Jedlicka, T.5
Monincova, M.6
Kuta-Smatanova, I.7
Nagata, Y.8
Damborsky, J.9
Wilce, M.C.10
-
31
-
-
0041823656
-
Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates
-
Streltsov V.A., Prokop Z., Damborsky J., Nagata Y., Oakley A., and Wilce M.C. Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates. Biochemistry 42 (2003) 10104-10112
-
(2003)
Biochemistry
, vol.42
, pp. 10104-10112
-
-
Streltsov, V.A.1
Prokop, Z.2
Damborsky, J.3
Nagata, Y.4
Oakley, A.5
Wilce, M.C.6
-
32
-
-
0041989751
-
CASTp: computed atlas of surface topography of proteins
-
Binkowski T.A., Naghibzadeg S., and Liang J. CASTp: computed atlas of surface topography of proteins. Nucleic Acids Res. 31 (2003) 3352-3355
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3352-3355
-
-
Binkowski, T.A.1
Naghibzadeg, S.2
Liang, J.3
-
33
-
-
0242432320
-
Reconstruction of mycobacterial dehalogenase Rv2579 by cumulative mutagenesis of haloalkane dehalogenase LinB
-
Nagata Y., Prokop Z., Marvanova S., Sykorova J., Monincova M., Tsuda M., and Damborsky J. Reconstruction of mycobacterial dehalogenase Rv2579 by cumulative mutagenesis of haloalkane dehalogenase LinB. Appl. Environ. Microbiol. 69 (2003) 2349-2355
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2349-2355
-
-
Nagata, Y.1
Prokop, Z.2
Marvanova, S.3
Sykorova, J.4
Monincova, M.5
Tsuda, M.6
Damborsky, J.7
-
34
-
-
0034623005
-
T-Coffee: a novel method for fast and accurate multiple sequence alignment
-
Notredame C., Higgins D.G., and Heringa J. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302 (2000) 205-217
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
35
-
-
0032961270
-
ESPript: analysis of multiple sequence alignments in PostScript
-
Gouet P., Courcelle E., Stuart D.I., and Metoz F. ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15 (1999) 305-308
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
-
36
-
-
38549099969
-
-
W.L. DeLano, The PyMOL Molecular Graphics System on World Wide Web http://www.pymol.org.(2002).
-
-
-
-
37
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel E., and Henrick K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D Biol. Crystallogr. 60 (2004) 2256-2268
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
|