Preliminary studies on palladium nanoparticle as a novel label for DNA microarray and their corresponding detection

Journal of Biomedical Nanotechnology

Volumn 9, Issue 6, 2013, Pages 1050-1059

  Wang, Zhifei ^a   Li, Hongyin ^a   Zhen, Shuang ^a   Zhang, Yuanying ^a   He, Nongyue ^a  

^a SOUTHEAST UNIVERSITY   (China)

Author keywords

Cobalt staining; DNA microarray; Label; Palladium nanoparticle; Silver staining

Indexed keywords

COLORIMETRIC ARRAYS; DNA MICRO-ARRAY; GOLD LABEL SILVER STAIN; MAGNETIC TUNNEL JUNCTION SENSORS; PALLADIUM NANOPARTICLES; PRELIMINARY STUDIES; SIGNAL AMPLIFICATIONS; SILVER STAINING;

COBALT; LABELS; MAGNETIC DEVICES; NANOPARTICLES;

SILVER;

COBALT; GOLD; METAL NANOPARTICLE; PALLADIUM; PALLADIUM NANOPARTICLE; SILVER; SINGLE STRANDED DNA; UNCLASSIFIED DRUG;

ARTICLE; BASE MISPAIRING; CATALYSIS; COLORIMETRY; DNA HYBRIDIZATION; DNA MICROARRAY; GENE AMPLIFICATION; MICROARRAY ANALYSIS; MOLECULAR SENSOR; SILVER STAINING; STAINING;

COLORIMETRY; DNA; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; IN SITU HYBRIDIZATION; LUMINESCENT MEASUREMENTS; METAL NANOPARTICLES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PALLADIUM; PILOT PROJECTS; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; STAINING AND LABELING;

EID: 84877821458     PISSN: 15507033     EISSN: 15507041     Source Type: Journal    
DOI: 10.1166/jbn.2013.1609     Document Type: Article

References (35)

1. G. McGall and F. C. Christians, High-Density Genechip Oligonucleotide Probe Arrays, Advances In Biochemical Engineering Biotechnology, Springer-Verlag, Berlin, Heidelberg (2002), p. 77.
2. S. Mark, S. Dari, W. D. Ronald, and O. B. Patrick, Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 20, 467 (1995).
3. G. David, M. R. Douglas, C. P. Stephen, S. Joseph, J. D. Maitreya, B. David, and K. Leonid, Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray. Science 31, 1932 (2006).
4. H. Hatakeyama, E. Ito, M. Yamamoto, H. Akita, Y. Hayashi, K. Kajimoto, N. Kaji, Y. Baba, and H. Harashima, A DNA microarray-based analysis of the host response to a nonviral gene carrier: A strategy for improving the immune response. Mol. Ther. 19, 1487 (2011).
5. A. S. Ishkanian, C. A. Malloff, S. K. Watson, R. J. deLeeuw, B. Chi, B. P. Coe, A. Snijders, D. G Albertson, D. Pinkel, M. A. Marra, V. Ling, C. MacAulay, and W. L. Lam, A tiling resolution DNA microarray with complete coverage of the human genome. Nat. Genet. 36, 299 (2004).
6. W. Fritzsche and T. A. Taton, Metal nanoparticles as labels for heterogeneous, chip-based DNA detection. Nanotechnology 14, R63 (2003).
7. R. L. Edelstein, C. R. Tamanaha, P. E. Sheehan, M. M. Miller, D. R. Baselt, L. J. Whitman, and R. J. Colton, The BARC biosensor applied to the detection of biological warfare agents. Biosens. Bioelectron. 14, 805 (2000).
8. X. C. Zhou and J. Z. Zhou, Improving the signal sensitivity and photostability of DNA hybridizations on microarrays by using dyedoped core-shell silica nanoparticles, Anal. Chem. 76, 5302 (2004).
9. I. L Medintz, H. T. Uyeda, E. R. Goldman, and H. Mattoussi, Quantum dot bioconjugates for imaging, labelling and sensing. Nat. Mater. 4, 435 (2005).
10. D. Gerion, F. Q. Chen, B. Kannan, A. H. Fu, W. J. Parak, D. J. Chen, A. Majumdar, and A. P. Alivisatos, Room-temperature single-nucleotide polymorphism and multiallele DNA detection using fluorescent nanocrystals and microarrays. Anal. Chem. 75, 4766 (2003).
11. R. L. Millen, T. Kawaguchi, M. C. Granger, and M. D. P. Tondra, Giant magnetoresistive sensors and superparamagnetic nanoparticles: A chip-scale detection Strategy for immunosorbent assays. Anal. Chem. 77, 6581 (2005).
12. T. A. Taton, C. A. Mirkin, and R. L. Letsinger, Scanometric DNA array detection with nanoparticles probes. Science 289, 1757 (2000).
13. X. D. Cao, Y. K Ye, and S. Q. Liu, Gold nanoparticle-based signal amplification for biosensing. Anal. Biochem. 417, 1 (2011).
14. T. A. Taton, G. Lu, and C. A. Mirkin, Two-colour labeling of oligonucleotide arrays via size-selective scattering of nanoparticle probes. J. Am. Chem. Soc. 123, 5164 (2001).
15. J. J. Storhoff, R. Elghanian, R. C. Mucic, C. A. Mirkin, and R. L. Letsinger, One-pot colorimetric differentiation of polynucleotides with single base imperfections using gold nanoparticle probes. J. Am. Chem. Soc. 120, 1959 (1998).
16. R. Elghanian, J. J. Storhoff, R. C. Mucic, R. L. Letsinger, and C. A. Mirkin, Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles. Science 277, 1078 (1997).
17. R. Liu, X. Liu, Y. R. Tang, L. Wu, X. D. Hou, and Y. Lv, Highly sensitive immonosaay based on immunogold-silver amplification and inductively coupled plasma mass spectrometric detection. Anal. Chem. 83, 2330 (2011).
18. D. Aldakov, Y. Bonnassieux, B. Geffroy, and S. Palacin, Selective electroless copper deposition on self-assembled dithiol monolayers. Appl. Mater. Interfaces 1, 584 (2009).
19. T. C. Wang, B. Chen, M. F. Rubner, and R. E. Cohen, Selective electroless nickel plating on polyelectrolyte multilayer platforms. Langmuir 17, 6610 (2001).
20. Q. Gu and D. T. Haynie, Palladium nanoparticle-controlled growth of magnetic cobalt nanowires on DNA templates. Mater. Lett. 62, 3047 (2008).
21. D. Ishii, T. Nagashima, M. Udatsu, R. D. Sun, Y. Ishikawa, S. Kawasaki, M. Yamada, T. Iyoda, and M. Nakagawa, Pd-promoted Ni-P electroless deposition on a hydrogen-bonded molecular surface of a supramolecular fibrous template. Chem. Mater. 18, 2152 (2006).
22. X. C. Xu, A. M. Bittner, and K. Kern, Spatially selective electroless deposition of cobalt on oxide surface directed by microcontact printing of dendrimers. Langmuir 18, 4984 (2002).
23. N. John, L. M. Rachel, A. B. Heather, D. P. M. Marc, and T. C. Granger, Giant magnetoresistance sensors. 1. Internally calibrated readout of scanned magnetic arrays. Anal. Chem. 80, 7930 (2008).
24. L. M. Rachel, N. John, A. B. Heather, D. P. M. Marc, and T. C. Granger, Giant magenetoresistive sensors. 2. Detection of biorecognition events at self-referencing and magnetically tagged arrays. Anal. Chem. 80, 7940 (2008).
25. D. P. Randy, R. Gunter, C. X. Liu, W. Roel, L. Wim, N. Olle, and L. Liesbet, Magnetic bead sensing platform for the detection of proteins. Anal. Chem. 79, 8669 (2007).
26. Z. F. Wang, H. Y. Li, S. Zheng, and N. Y. He, Preparation of carboxyl group-modified palladium nanoparticles in an aqueous solution and their conjugation with DNA. Nanoscale 4, 3536 (2012).
27. R. Westermeier and R. Marouga, Protein detection methods in proteomics research. Biosci. Rep. 25, 19 (2005).
28. F. B. Noronha, M. Schmal, B. Moraweck, P. Delichère, M. Brun, F. Villain, and R. Fréty, Characterization of niobia-supported palladium-cobalt catalysts. J. Phys. Chem. B 104, 5478 (2000).
29. Y. Bai, D. Lin, Q. Han, Y. Jia, J. Tu, J. Luo, Q. Ge, D. Zhang, and Z. Lu, Discrimination of single nucleotide mutation by using a new class of immobilized shared-stem double-stranded DNA probes. J. Biomed. Nanotechnol. 7, 640 (2011).
30. H. Zhao, X. Ma, M. Li, D. Zhou, P. Xiao, and Z. Lu, Analysis of CpG island methylation using rolling circle amplification (RCA) product microarray. J. Biomed. Nanotechnol. 7, 292 (2011).
31. J. R. Thompson, M. Fuchs, K. F. Fischer, and K. L. Perry, Macroarray detection of grapevine leafroll-associated viruses. J. Virol. Methods 183, 161 (2012).
32. G. Xia, W. Gao, K. Ji, S. Liu, B. Wan, J. Luo, and Y. Bai, Single nucleotide polymorphisms analysis of noise-induced hearing loss using three-dimensional polyacrylamide gel-based microarray method. J. Biomed. Nanotechnol. 7, 807 (2011).
33. J.-I. Hahm, Polymeric surface-mediated, high-density nano-assembly of functional protein arrays. J. Biomed. Nanotechnol. 7, 731 (2011).
34. A. Bitar, H. Fessi, and A. Elaissari, Synthesis and characterization of thermally and glucose-sensitive poly N-Vinylcaprolactam-based microgels. J. Biomed. Nanotechnol. 8, 709 (2012).
35. A. Ronowicz, M. Brzeskwiniewicz, P. Madanecki, P. G. Buckley, E. Orlowska, J. R. Ochocka, J. Limon, and A. Piotrowski, Regeneration of comparative genomic hybridization oligonucleotide microarrays with dimethylurea. Anal. Biochem. 426, 91 (2012).