-
1
-
-
79957628227
-
ERK signaling controls blastema cell differentiation during planarian regeneration
-
21610023 10.1242/dev.060764 1:CAS:528:DC%2BC3MXhtVemtbbL
-
Tasaki J, Shibata N, Nishimura O, Itomi K, Tabata Y, Son F, Suzuki N, Araki R, Abe M, Agata K, Umesono Y (2011) ERK signaling controls blastema cell differentiation during planarian regeneration. Development 138:2417-2427
-
(2011)
Development
, vol.138
, pp. 2417-2427
-
-
Tasaki, J.1
Shibata, N.2
Nishimura, O.3
Itomi, K.4
Tabata, Y.5
Son, F.6
Suzuki, N.7
Araki, R.8
Abe, M.9
Agata, K.10
Umesono, Y.11
-
2
-
-
0036255131
-
Not your father's planarian: A classic model enters the era of functional genomics
-
11972158 10.1038/nrg759 1:CAS:528:DC%2BD38Xit1Cks7s%3D
-
Newmark PA, Sánchez Alvarado A (2002) Not your father's planarian: a classic model enters the era of functional genomics. Nat Rev Genet 3:210-219
-
(2002)
Nat Rev Genet
, vol.3
, pp. 210-219
-
-
Newmark, P.A.1
Sánchez Alvarado, A.2
-
3
-
-
51049089115
-
Molecular analysis of stem cells and their descendants during cell turnover and regeneration in the planarian Schmidtea mediterranea
-
18786419 10.1016/j.stem.2008.07.002 1:CAS:528:DC%2BD1cXhtF2jtr%2FI
-
Eisenhoffer GT, Kang H, Sánchez Alvarado A (2008) Molecular analysis of stem cells and their descendants during cell turnover and regeneration in the planarian Schmidtea mediterranea. Cell Stem Cell 3:327-339
-
(2008)
Cell Stem Cell
, vol.3
, pp. 327-339
-
-
Eisenhoffer, G.T.1
Kang, H.2
Sánchez Alvarado, A.3
-
4
-
-
38549143656
-
SmedGD: The Schmidtea mediterranea genome database
-
17881371 10.1093/nar/gkm684 1:CAS:528:DC%2BD1cXhtVWitrg%3D
-
Robb SM, Ross E, Sanchez Alvarado A (2008) SmedGD: the Schmidtea mediterranea genome database. Nucleic Acids Res 36:D599-D606
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Robb, S.M.1
Ross, E.2
Sanchez Alvarado, A.3
-
5
-
-
27744477538
-
Camels and zebrafish, viruses and cancer: A microRNA update
-
16244316 10.1093/hmg/ddi271 1:CAS:528:DC%2BD2MXhtFCjtL3L
-
Berezikov E, Plasterk RH (2005) Camels and zebrafish, viruses and cancer: a microRNA update. Hum Mol Genet 14(Spec No. 2):R183-R190
-
(2005)
Hum Mol Genet
, vol.14
, Issue.SPEC NO. 2
-
-
Berezikov, E.1
Plasterk, R.H.2
-
6
-
-
33745249539
-
Viruses and microRNAs
-
16736021 10.1038/ng1793 1:CAS:528:DC%2BD28XltVOmt7Y%3D
-
Cullen BR (2006) Viruses and microRNAs. Nat Genet 38(Suppl):S25-S30
-
(2006)
Nat Genet
, vol.38
, Issue.SUPPL.
-
-
Cullen, B.R.1
-
7
-
-
33745271035
-
Functions of microRNAs and related small RNAs in plants
-
16736022 10.1038/ng1791 1:CAS:528:DC%2BD28XltVOmt7k%3D
-
Mallory AC, Vaucheret H (2006) Functions of microRNAs and related small RNAs in plants. Nat Genet 38(Suppl):S31-S36
-
(2006)
Nat Genet
, vol.38
, Issue.SUPPL.
-
-
Mallory, A.C.1
Vaucheret, H.2
-
8
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
8252621 10.1016/0092-8674(93)90529-Y 1:CAS:528:DyaK2cXpslGqtA%3D%3D
-
Lee RC, Feinbaum RL, Ambros V (1993) The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75:843-854
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
9
-
-
3042767202
-
MicroRNAs: Small RNAs with a big role in gene regulation
-
15211354 10.1038/nrg1379 1:CAS:528:DC%2BD2cXltVSmsbw%3D
-
He L, Hannon GJ (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 5:522-531
-
(2004)
Nat Rev Genet
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.J.2
-
10
-
-
18344369543
-
MicroRNA biogenesis: Coordinated cropping and dicing
-
15852042 10.1038/nrm1644 1:CAS:528:DC%2BD2MXjvF2jsLg%3D
-
Kim VN (2005) MicroRNA biogenesis: coordinated cropping and dicing. Nat Rev Mol Cell Biol 6:376-385
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 376-385
-
-
Kim, V.N.1
-
11
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
11679672 10.1126/science.1065329 1:CAS:528:DC%2BD3MXotVChu70%3D
-
Lee RC, Ambros V (2001) An extensive class of small RNAs in Caenorhabditis elegans. Science 294:862-864
-
(2001)
Science
, vol.294
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
12
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
11679671 10.1126/science.1065062 1:CAS:528:DC%2BD3MXotVChurw%3D
-
Lau NC, Lim LP, Weinstein EG, Bartel DP (2001) An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294:858-862
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
13
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
11679670 10.1126/science.1064921 1:CAS:528:DC%2BD3MXotVChtb8%3D
-
Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T (2001) Identification of novel genes coding for small expressed RNAs. Science 294:853-858
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
-
14
-
-
77955902024
-
The widespread regulation of microRNA biogenesis, function and decay
-
20661255 1:CAS:528:DC%2BC3cXhtVCnurzF
-
Krol J, Loedige I, Filipowicz W (2010) The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet 11:597-610
-
(2010)
Nat Rev Genet
, vol.11
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
15
-
-
65349117527
-
MiRNAs and cancer
-
19264914 10.2353/ajpath.2009.080794 1:CAS:528:DC%2BD1MXksVOksL0%3D
-
Visone R, Croce CM (2009) MiRNAs and cancer. Am J Pathol 174:1131-1138
-
(2009)
Am J Pathol
, vol.174
, pp. 1131-1138
-
-
Visone, R.1
Croce, C.M.2
-
16
-
-
58149235625
-
MicroRNAs in embryonic stem cells
-
18821562 10.1002/jcp.21607 1:CAS:528:DC%2BD1MXns1Sntw%3D%3D
-
Wang Y, Keys DN, Au-Young JK, Chen C (2009) MicroRNAs in embryonic stem cells. J Cell Physiol 218:251-255
-
(2009)
J Cell Physiol
, vol.218
, pp. 251-255
-
-
Wang, Y.1
Keys, D.N.2
Au-Young, J.K.3
Chen, C.4
-
17
-
-
33745248430
-
MicroRNA target predictions in animals
-
16736023 10.1038/ng1798 1:CAS:528:DC%2BD28XltVOmtL4%3D
-
Rajewsky N (2006) microRNA target predictions in animals. Nat Genet 38(Suppl):S8-S13
-
(2006)
Nat Genet
, vol.38
, Issue.SUPPL.
-
-
Rajewsky, N.1
-
18
-
-
67650711615
-
SOAP2: An improved ultrafast tool for short read alignment
-
19497933 10.1093/bioinformatics/btp336 1:CAS:528:DC%2BD1MXovVeku7w%3D
-
Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25:1966-1967
-
(2009)
Bioinformatics
, vol.25
, pp. 1966-1967
-
-
Li, R.1
Yu, C.2
Li, Y.3
Lam, T.W.4
Yiu, S.M.5
Kristiansen, K.6
Wang, J.7
-
19
-
-
44149127238
-
The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians
-
18456843 10.1261/rna.1085008 1:CAS:528:DC%2BD1cXntVCjs7k%3D
-
Palakodeti D, Smielewska M, Lu YC, Yeo GW, Graveley BR (2008) The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians. RNA 14:1174-1186
-
(2008)
RNA
, vol.14
, pp. 1174-1186
-
-
Palakodeti, D.1
Smielewska, M.2
Lu, Y.C.3
Yeo, G.W.4
Graveley, B.R.5
-
20
-
-
77956873456
-
Advances in understanding tissue regenerative capacity and mechanisms in animals
-
20838411 10.1038/nrg2879 1:CAS:528:DC%2BC3cXhtFyju77I
-
Poss KD (2010) Advances in understanding tissue regenerative capacity and mechanisms in animals. Nat Rev Genet 11:710-722
-
(2010)
Nat Rev Genet
, vol.11
, pp. 710-722
-
-
Poss, K.D.1
-
21
-
-
67650925067
-
High-resolution profiling and discovery of planarian small RNAs
-
19564616 10.1073/pnas.0905222106
-
Friedländer MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sánchez Alvarado A, Kim JK, Rajewsky N (2009) High-resolution profiling and discovery of planarian small RNAs. Proc Natl Acad Sci USA 106:11546-11551
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 11546-11551
-
-
Friedländer, M.R.1
Adamidi, C.2
Han, T.3
Lebedeva, S.4
Isenbarger, T.A.5
Hirst, M.6
Marra, M.7
Nusbaum, C.8
Lee, W.L.9
Jenkin, J.C.10
Sánchez Alvarado, A.11
Kim, J.K.12
Rajewsky, N.13
-
22
-
-
67650998880
-
Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
-
19553344 10.1261/rna.1702009 1:CAS:528:DC%2BD1MXpsFOlurY%3D
-
Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR (2009) Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea. RNA 15:1483-1491
-
(2009)
RNA
, vol.15
, pp. 1483-1491
-
-
Lu, Y.C.1
Smielewska, M.2
Palakodeti, D.3
Lovci, M.T.4
Aigner, S.5
Yeo, G.W.6
Graveley, B.R.7
-
23
-
-
79952467615
-
Novel and conserved micrornas in Dalian purple urchin (Strongylocentrotus nudus) identified by next generation sequencing
-
21383954 10.7150/ijbs.7.180 1:CAS:528:DC%2BC3MXjsFSisLY%3D
-
Wei Z, Liu X, Feng T, Chang Y (2011) Novel and conserved micrornas in Dalian purple urchin (Strongylocentrotus nudus) identified by next generation sequencing. Int J Biol Sci 7:180-192
-
(2011)
Int J Biol Sci
, vol.7
, pp. 180-192
-
-
Wei, Z.1
Liu, X.2
Feng, T.3
Chang, Y.4
-
24
-
-
33947107476
-
The miRNA pathway intrinsically controls self-renewal of Drosophila germline stem cells
-
17320391 10.1016/j.cub.2007.01.060 1:CAS:528:DC%2BD2sXjt1Slt70%3D
-
Park JK, Liu X, Strauss TJ, McKearin DM, Liu Q (2007) The miRNA pathway intrinsically controls self-renewal of Drosophila germline stem cells. Curr Biol 17:533-538
-
(2007)
Curr Biol
, vol.17
, pp. 533-538
-
-
Park, J.K.1
Liu, X.2
Strauss, T.J.3
McKearin, D.M.4
Liu, Q.5
-
25
-
-
0034775750
-
Specific double-stranded RNA interference in undifferentiated mouse embryonic stem cells
-
11604515 10.1128/MCB.21.22.7807-7816.2001 1:CAS:528:DC%2BD3MXnvVWlt78%3D
-
Yang S, Tutton S, Pierce E, Yoon K (2001) Specific double-stranded RNA interference in undifferentiated mouse embryonic stem cells. Mol Cell Biol 21:7807-7816
-
(2001)
Mol Cell Biol
, vol.21
, pp. 7807-7816
-
-
Yang, S.1
Tutton, S.2
Pierce, E.3
Yoon, K.4
-
26
-
-
77950584927
-
MicroRNA-125a represses cell growth by targeting HuR in breast cancer
-
19875930 10.4161/rna.6.5.10079 1:CAS:528:DC%2BC3cXmtlWitL0%3D
-
Guo X, Wu Y, Hartley RS (2009) MicroRNA-125a represses cell growth by targeting HuR in breast cancer. RNA Biol 6:575-583
-
(2009)
RNA Biol
, vol.6
, pp. 575-583
-
-
Guo, X.1
Wu, Y.2
Hartley, R.S.3
-
27
-
-
1842639526
-
Differential gene expression during the reparative regeneration of differing polarities in planarians
-
9173352 1:STN:280:DyaK2s3nsV2gsw%3D%3D
-
Bogdanova EA, Matts MV, Tarabykin VS, Usman N, Luk'ianov SA (1997) Differential gene expression during the reparative regeneration of differing polarities in planarians. Ontogenez 28:132-137
-
(1997)
Ontogenez
, vol.28
, pp. 132-137
-
-
Bogdanova, E.A.1
Matts, M.V.2
Tarabykin, V.S.3
Usman, N.4
Luk'Ianov, S.A.5
-
28
-
-
38349150677
-
Smed-betacatenin-1 is required for anteroposterior blastema polarity in planarian regeneration
-
18063755 10.1126/science.1149943 1:CAS:528:DC%2BD1cXmt1yjsA%3D%3D
-
Petersen CP, Reddien PW (2008) Smed-betacatenin-1 is required for anteroposterior blastema polarity in planarian regeneration. Science 319:327-330
-
(2008)
Science
, vol.319
, pp. 327-330
-
-
Petersen, C.P.1
Reddien, P.W.2
-
29
-
-
70350134956
-
A wound-induced Wnt expression program controls planarian regeneration polarity
-
19805089 10.1073/pnas.0906823106 1:CAS:528:DC%2BD1MXhtlaksL%2FN
-
Petersen CP, Reddien PW (2009) A wound-induced Wnt expression program controls planarian regeneration polarity. Proc Natl Acad Sci USA 106:17061-17066
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 17061-17066
-
-
Petersen, C.P.1
Reddien, P.W.2
-
30
-
-
74549192488
-
Planarian hedgehog/patched establishes anterior-posterior polarity by regulating Wnt signaling
-
20018728 10.1073/pnas.0907464106 1:CAS:528:DC%2BC3cXmtlamtg%3D%3D
-
Yazawa S, Umesono Y, Hayashi T, Tarui H, Agata K (2009) Planarian hedgehog/patched establishes anterior-posterior polarity by regulating Wnt signaling. Proc Natl Acad Sci USA 106:22329-22334
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 22329-22334
-
-
Yazawa, S.1
Umesono, Y.2
Hayashi, T.3
Tarui, H.4
Agata, K.5
-
31
-
-
71549119821
-
Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia
-
19933103 10.1126/science.1178712 1:CAS:528:DC%2BD1MXhsV2gsLjN
-
Rink JC, Gurley KA, Elliott SA, Sanchez Alvarado A (2009) Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia. Science 326:1406-1410
-
(2009)
Science
, vol.326
, pp. 1406-1410
-
-
Rink, J.C.1
Gurley, K.A.2
Elliott, S.A.3
Sanchez Alvarado, A.4
-
32
-
-
79952610078
-
Dishevelled is essential for neural connectivity and planar cell polarity in planarians
-
21282632 10.1073/pnas.1012090108 1:CAS:528:DC%2BC3MXitl2jsLg%3D
-
Almuedo-Castillo M, Salo E, Adell T (2011) Dishevelled is essential for neural connectivity and planar cell polarity in planarians. Proc Natl Acad Sci USA 108:2813-2818
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 2813-2818
-
-
Almuedo-Castillo, M.1
Salo, E.2
Adell, T.3
-
33
-
-
79956053290
-
Polarized notum activation at wounds inhibits Wnt function to promote planarian head regeneration
-
21566195 10.1126/science.1202143 1:CAS:528:DC%2BC3MXlslylsL8%3D
-
Petersen CP, Reddien PW (2011) Polarized notum activation at wounds inhibits Wnt function to promote planarian head regeneration. Science 332:852-855
-
(2011)
Science
, vol.332
, pp. 852-855
-
-
Petersen, C.P.1
Reddien, P.W.2
-
34
-
-
58149191274
-
Rfam: Updates to the RNA families database
-
18953034 10.1093/nar/gkn766 1:CAS:528:DC%2BD1cXhsFejtLrJ
-
Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, Bateman A (2009) Rfam: updates to the RNA families database. Nucleic Acids Res 37:D136-D140
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.G.3
Nawrocki, E.P.4
Kolbe, D.L.5
Lindgreen, S.6
Wilkinson, A.C.7
Finn, R.D.8
Griffiths-Jones, S.9
Eddy, S.R.10
Bateman, A.11
-
35
-
-
74049164557
-
Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
-
19615057 10.1186/gb-2009-10-7-r78
-
Chen X, Li Q, Wang J, Guo X, Jiang X, Ren Z, Weng C, Sun G, Wang X, Liu Y, Ma L, Chen JY, Wang J, Zen K, Zhang J, Zhang CY (2009) Identification and characterization of novel amphioxus microRNAs by Solexa sequencing. Genome Biol 10:R78
-
(2009)
Genome Biol
, vol.10
, pp. 78
-
-
Chen, X.1
Li, Q.2
Wang, J.3
Guo, X.4
Jiang, X.5
Ren, Z.6
Weng, C.7
Sun, G.8
Wang, X.9
Liu, Y.10
Ma, L.11
Chen, J.Y.12
Wang, J.13
Zen, K.14
Zhang, J.15
Zhang, C.Y.16
-
36
-
-
67649885497
-
Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust
-
19146710 10.1186/gb-2009-10-1-r6
-
Wei Y, Chen S, Yang P, Ma Z, Kang L (2009) Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust. Genome Biol 10:R6
-
(2009)
Genome Biol
, vol.10
, pp. 6
-
-
Wei, Y.1
Chen, S.2
Yang, P.3
Ma, Z.4
Kang, L.5
-
37
-
-
0030681260
-
The significance of digital gene expression profiles
-
9331369 1:CAS:528:DyaK2sXntFahurc%3D
-
Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res 7:986-995
-
(1997)
Genome Res
, vol.7
, pp. 986-995
-
-
Audic, S.1
Claverie, J.M.2
-
38
-
-
38849140922
-
Protocol: A highly sensitive RT-PCR method for detection and quantification of microRNAs
-
17931426 10.1186/1746-4811-3-12
-
Varkonyi-Gasic E, Wu R, Wood M, Walton EF, Hellens RP (2007) Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Methods 3:12
-
(2007)
Plant Methods
, vol.3
, pp. 12
-
-
Varkonyi-Gasic, E.1
Wu, R.2
Wood, M.3
Walton, E.F.4
Hellens, R.P.5
|