pH within pores in plant fiber cell walls assessed by Fluorescence Ratio Imaging

Cellulose

Volumn 20, Issue 3, 2013, Pages 1041-1055

  Hidayat, Budi J ^a   Thygesen, Lisbeth G ^a   Johansen, Katja S ^b  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b NOVOZYMES A S   (Denmark)

Author keywords

Cellulases; Dislocations; Donnan effect; FRIM; Lignocellulosic fibers; Xylanase

Indexed keywords

CELLULASES; DONNAN EFFECTS; FRIM; LIGNOCELLULOSIC FIBERS; XYLANASES;

CELLS; CYTOLOGY; DISLOCATIONS (CRYSTALS); EXPERIMENTS; FIBERS; HEMP FIBERS; HYDROLYSIS;

PH EFFECTS;

CELLULOSE FIBERS; CYTOLOGY; HEMP; HYDROLYSIS; LIGNOCELLULOSE; XYLANASE;

EID: 84877628509     PISSN: 09690239     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10570-013-9912-8     Document Type: Article

References (55)

1. Adani F, Papa G, Schievano A, Cardinale G, D'Imporzano G, Tambone F (2011) Nanoscale structure of the cell wall protecting cellulose from enzyme attack. Environ Sci Technol 45: 1107-1113.
2. Ander P, Hildén L, Daniel G (2008) Cleavage of softwood kraft pulp fibers by HCl and cellulases. BioResources 3: 477-490.
3. Andreasson B, Wågberg L (2009) On the mechanisms behind the action of wet strength and wet strength agents. In: Ek M, Gellerstedt G, Henriksson G (eds) Pulp and Paper Chemistry and Technology: Paper Products Physics and Technology. de Gruyter, Berlin, pp 185-208.
4. Antongiovanni M, Sargentini C (1991) Variability in chemical composition of straws. Options Méditerranéennes-Série Séminaires 16: 49-53.
5. Breeuwer P, Abee T (2000) Assessment of the intracellular pH of immobilized and continuously perfused yeast cells employing fluorescence ratio imaging analysis. J Microbiol Methods 39: 253-264.
6. Bright GR, Fisher GW, Rogowska J, Taylor DL (1987) Fluorescence ratio imaging microscopy: temporal and spatial measurements of cytoplasmic pH. J Cell Biol 104: 1019-1033.
7. Bubner P, Dohr J, Plank H, Mayrhofer C, Nidetzky B (2012) Cellulose dig deep: in situ observation of the mesoscopic structural dynamics of enzymatic cellulose degradation. J Biol Chem 287: 2759-2765.
8. Buchert J, Tamminen T, Viikari L (1997) Impact of the Donnan effect on the action of xylanases on fiber substrates. J Biotech 57: 217-222.
9. Buchert J, Tenkanen M, Tamminen T (2001) Characterization of carboxylic acids during kraft and superbatch pulping. Tappi J 84: 1-9.
10. Capper BS (1988) Genetic-variation in the feeding value of cereal straw. Anim Feed Sci Technol 21: 127-140.
11. Covington AK, Whalley PD, Davison W (1985) Recommendations for the determination of pH in low ionic strength fresh waters. Pure Appl Chem 57: 877-886.
12. Dainty J, Hope AB (1961) The electric double layer and the Donnan equilibrium in relation to plant cell walls. Aust J Biol Sci 14: 541-551.
13. Dellian M, Helmlinger G, Yuan F, Jain RK (1996) Fluorescence ratio imaging of interstitial pH in solid tumours: effect of glucose on spatial and temporal gradients. Br J Cancer 74: 1206-1215.
14. Donnan FG, Harris AB (1911) The osmotic pressure and conductivity of aqueous solutions of congo red and reversible membrane equilibrium. J Chem Soc 99: 1554-1577.
15. Fa K, Tulock JJ, Sweedler JV, Bohn PW (2005) Profiling pH gradients across nanocapillary array membranes connecting microfluidic channels. J Am Chem Soc 127: 13928-13933.
16. Fahlén J, Salmén L (2005) Pore and matrix distribution in the fiber wall revealed by atomic force microscopy and image analysis. Biomacromolecules 6: 433-438.
17. Fält S, Wågberg M (2003) Influence of electrolytes on the swelling and strength of kraft-liner pulps. Nordic Pulp Pap J 18: 69-73.
18. Fornasiero F, Park HG, Holt JK, Stadermann M, Grigoropoulos CP, Noy A, Bakajin O (2008) Ion exclusion by sub-2-nm carbon nanotube pores. PNAS 105: 17250-17255.
19. Fu Y, Collinson MM, Higgins DA (2004) Single-molecule spectroscopy studies of microenvironmental acidity in silicate thin films. J Am Chem Soc 16: 13838-13844.
20. Gama FM, Teixeira JA, Mota M (1994) Cellulose morphology and enzymatic reactivity: a modified solute exclusion technique. Biotech Bioeng 43: 381-387.
21. Grethlein HE (1985) The effect of pore size distribution on the rate of enzymatic hydrolysis of cellulosic substrates. Bio/Technology 3: 155-160.
22. Griffin DM (1977) Water potential and wood-decay fungi. Annu Rev Phytopathol 15: 319-329.
23. Grignon J, Scallan T (1980) Effect of pH and neutral salt upon the swelling of cellulose gels. J Appl Polym Sci 25: 2829-2843.
24. Grynkiewicz G, Poenie M, Tsien RY (1985) A new generation of Ca2 + indicators with greatly improved fluorescence properties. J Biol Chem 260: 3440-3450.
25. Heinemann M, Limper U, Bu{double acute}chs J (2004) New insights in the spatially resolved dynamic pH measurement in macroscopic large absorbent particles by confocal laser scanning microscopy. J Chromatogr 1024: 45-53.
26. Hidayat BJ, Thygesen LG, Johansen KS, Felby C (2011) Using fluorescence microscopy to probe cell wall ultrastructure and susceptibility to enzyme binding. In: Orlandi M, Crestini C (eds) Italic 6: science & technology of biomasses, proceeding book, pp 121-124, 5-8 Sept 2011, Viterbo, Italy.
27. Hidayat BJ, Felby C, Johansen KS, Thygesen LG (2012) Cellulose is not just cellulose: a review of dislocations as reactive sites in the enzymatic hydrolysis of cellulose microfibrils. Cellulose 19: 1481-1493.
28. Kempen GMP, van Vliet LJ (2000) Mean and variance of ratio estimator used in fluorescence ratio imaging. Cytometry 39: 300-305.
29. Kristensen J, Thygesen L, Felby C, Jørgensen H, Elder T (2008) Cell-wall structural changes in wheat straw pretreated for bioethanol production. Biotechnol Biofuels. 1: 29-32. doi: 10. 1186/1754-6834-1-5.
30. Larsen J, Petersen MØ, Thirup L, Li HW, Iversen FK (2008) The IBUS Process-lignocellulosic bioethanol close to a commercial reality. Chem Eng Technol 31: 765-772.
31. Levitz SM, Nong S-H, Seetoo KF, Harrison TS, Speizer RA, Simons ER (1999) Cryptococcus neoformans resides in an acidic phagolysosome of human macrophages. Infect Immun 67: 885-890.
32. Li C, Ladisch CM, Ladisch MR (2001) Pore characterization of cellulase enzyme treated cotton fabric. Text Res J 71: 407-414.
33. Lindedam J, Andersen SB, deMartini J, Bruun J, Jørgensen H, Felby C, Magid J, Yang B, Wyman CE (2012) Cultivar variation and selection potential relevant to the production of cellulosic ethanol from wheat straw. Biomass Bioenerg 37: 221-228.
34. Moore R, Clark WD (1995) Botany: plant form and function. Wm C Brown Publishers, Dubuque.
35. Nielsen LJ, Eyleyb S, Thielemans W, Aylott JW (2010) Dual fluorescent labelling of cellulose nanocrystals for pH sensing. Chem Commun 46: 8929-8931.
36. Nishiyama H, Ohya T, Tanoi K, Nakanishi TM (2008) A simple measurement of the pH of root apoplast by the fluorescence ratio method. Plant Root 2: 3-6. doi: 10. 3117/plantroot. 2. 3.
37. NurAlam Md, Antal M, Tejado A, van de Ven TGM (2012) Salt-induced acceleration of chemical reactions in cellulose nanopores. Cellulose 19: 517-522.
38. Posch HE, Leiner MJP, Wolfbeis OS (1989) Toward a gastric pH-sensor: an optrode for the pH 0-7 range. Fresenius Z Anal Chem 334: 162-165.
39. Rouvinen J, Bergfors T, Teeri T, Knowles J, Jones A (1990) Three-dimensional structure of cellobiohydrolase II from Trichoderma reesei. Science 249: 380-386.
40. Siegumfeldt H, Rechinger KB, Jakobsen M (1999) Use of fluorescence ratio imaging for intracellular pH determination of individual bacterial cells in mixed cultures. Microbiology 145: 1703-1709.
41. Sithole B (2005) New method of measuring the pH of wood chips. In: Appita conference, Auckland, New Zealand 16-19 May 2005.
42. Søndergaard CR, McIntosh LP, Pollastri G, Nielsen JE (2008) Determination of electrostatic interaction energies and protonation state populations in enzyme active sites. J Mol Biol 376: 269-287.
43. Sørensen HR, Meyer AS, Pedersen S (2003) Enzymatic hydrolysis of water-soluble wheat arabinoxylan. 1. Synergy between alpha-l-arabinofuranosidases, endo-1, 4-beta-xylanases, and beta-xylosidase activities. Biotechnol Bioeng 81: 726-731.
44. Spiess AC, Kasche V (2001) Direct measurement on pH profiles in immobilized enzyme carriers during kinetically controlled synthesis using CLSM. Biotechnol Prog 17: 294-303.
45. Sun W-C, Gee KR, Klaubert DH, Haugland RP (1997) Synthesis of fluorinated fluoresceins. J Org Chem 62: 6469-6475.
46. Taylor KACC (1995) A modification of the phenol sulfuric acid method of total sugar determination. Appl Biochem Biotechnol 53: 207-214.
47. 13C NMR spectroscopy. Carbohydr Res 272: 55-71.
48. Thygesen LG, Hidayat BJ, Johansen KS, Felby C (2011) Role of supramolecular cellulose structures in enzymatic hydrolysis of plant cell walls. J Ind Microbiol Biot 38: 975-983.
49. Tolera A, Tsegaye B, Berg T (2008) Effects of variety, cropping year, location and fertilizer application on nutritive value of durum wheat straw. J Anim Physiol Anim Nutr (Berl) 92: 121-130.
50. Tsien RY, Poenie M (1986) Fluorescence ratio imaging: a new window into intracellular ionic signaling. TIBS 11: 450-455.
51. Vlachy V, Haymet ADJ (1990) Salt exclusion from charged and uncharged micropores. J Electroanal Chem 283: 77-85.
52. Weimer PJ, Weston WM (1985) Relationship between the fine structure of native cellulose and cellulose degradability by the cellulase complexes of Trichoderma reesei and Clostridium thermocellum. Biotechnol Bioeng 27: 1540-1547.
53. Whitaker JE, Haugland RP, Prendergast FG (1991) Spectral and photophysical studies of benzo[c]xanthene dyes: dual emission pH sensors. Anal Biochem 194: 330-344.
54. Wilhelm S (2010) Confocal laser scanning microscopy. Carl Zeis Microimaging GmbH. http://www. zeiss. com/C1256D18002CC306/0/F99A7F3E8944EEE3C1256E5C0045F68B/$file/60-1-0030_confocal-principles. pdf. Accessed 7 Jan 2013.
55. Wu N, Hubbe MA, Rojas OJ, Park S (2009) Permeation of polyelectrolytes and other solutes into the pore spaces of water-swollen cellulose: a review. Bioresources 4: 1222-1262.