Mediterranean Hedysarum phylogeny by transferable microsatellites from Medicago

Biochemical Systematics and Ecology

Volumn 50, Issue , 2013, Pages 129-135

  Zitouna, Nadia ^a   Marghali, Sonia ^a   Gharbi, Maroua ^a   Chennaoui Kourda, Houda ^a   Haddioui, Abdelmajid ^b   Trifi Farah, Neila ^a  

^a FACULTÉ DES SCIENCES DE TUNIS   (Tunisia)

^b SULTAN MOULAY SLIMANE UNIVERSITY   (Morocco)

Author keywords

Medicago truncatula; Phylogeny; SSRs; Sulla; Transferability

Indexed keywords

ALLELE; BREEDING; EUKARYOTE; EVOLUTION; GENOME; GRASSLAND; HETEROZYGOSITY; INTRASPECIFIC VARIATION; PHYLOGENETICS; PHYLOGENY; SOIL NUTRIENT;

MEDITERRANEAN REGION;

EID: 84877359273     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bse.2013.03.040     Document Type: Article

References (28)

1. Belkhir K., Goudet J., Chikhi L. Genetix (Ver. 4.01) Logiciel sous windows TM pour la génétique des populations 2000, Laboratoire Génome et Population, Université Montpellier II, Montpellier, France.
2. Botstein D., White R.L., Skolnick M., Davis R.W. Construction of a genetic linkage map in man using restriction fragment polymorphisms. Am. J. Hum. Genet. 1980, 32:314-331.
3. Bullitta S., Bullitta P., Saba P. Seed production and its components in Sardinian germplasm of Hedysarum coronarium L. and H. spinosissimum L. CIHEAM - Options Mediterraneennes 2000, 45:355-358.
4. Cavalli-Sforza L.L., Edwards A.W.F. Phylogenetic analysis: models and estimation procedures. Am. J. Hum. Genet. 1967, 19:233-257.
5. Chennaoui-Kourda H., Marghali S., Zitouna N., Trifi-Farah N. Phylogenetic relationships of Mediteranean Hedysarea species assessed by AFLP markers. Plant Syst. Evol. 2012, 298:51-58.
6. Chennaoui H., Marghali S., Marrakchi M., Trifi-Farah N. Phylogenetic relationships in Mediterranean Hedysarum genus as inferred from ITS sequences of nuclear ribosomal DNA. Genet. Resour. Crop Evol. 2007, 54:389-397.
7. Chennaoui-Kourda H., Marghali S., Marrakchi M., Trifi-Farah N. Genetic diversity of Sulla genus (Hedysarea) and related species using Inter-Simple Sequence Repeat (ISSR) markers. Biochem. Syst. Ecol. 2007, 35:682-688.
8. Choi H.K., Mun J.H., Kim D.J., Zhu H., Baek J.M., Mudge J., Roe B., Ellis N., Doyle J., Kiss G.B., Young N.D., Cook D.R. Estimating genome conservation between crop and model legume species. PNAS 2004, 101:15289-15294.
9. Choi B.H., Ohashi H. Generic criteria and an infragenic system for Hedysarum and related genera (Papilionoideae-Leguminosae). Taxon 2003, 52:567-576.
10. Felsenstein J. PHYLIP (Phylogeny Inference Package) 2004, version 3.6. Distributed by the author, Department of Genome Sciences, University of Washington, Seattle.
11. Gutierrez M.V., Vaz Patto M.C., Huguet T., Cubero J.I., Moreno M.T., Torres A.M. Cross-species amplification of Medicago truncatula microsatellites across three major pulse crops. Theor. Appl. Genet. 2005, 110:1210-1217.
12. Hamrick J.L., Lee J.M. The effect of soil heterogeneity and litter cover on germination, survival, and growth of musk thistle. Am. J. Bot. 1987, 74:451-457.
13. He T.M., Chen X.S., Xu Z., Gao J.S., Lin P.J., Liu W., Liang Q., Wu Y. Using SSR markers to determine the population genetic structure of wild apricot (Prunus armeniaca L.) in the valley of West China. Genet. Resour. Crop Evol. 2007, 54:563-572.
14. Hendre P.S., Phanindranath R., Annapurna V., Lalremruata A., Aggarwa R.K. Development of new genomic microsatellite markers from robusta coffee (Coffea canephora Pierre ex A. Froehner) showing broad cross-species transferability and utility in genetic studies. BMC Plant Biol. 2008, 8:1-19. http://www.medicagohapmap.org/downloads_genome/Mt_genetic_markers_Oct_2009.txt.
15. Juan Y., Chu H.J., Wang H.C., Li J.Q., Sang T. Population genetic structure of two Medicago species shaped by distinct life form, mating system and seed dispersal. Ann. Bot. 2009, 103:825-834.
16. Julier B., Flajoulot S., Barre P., Cardinet G., Santoni S., Huguet T., Huyghe C. Construction of two genetic linkage maps in cultivated tetraploid alfalfa (Medicago sativa) using microsatellite and AFLP markers. BMC Plant Biol. 2003, 3:1-19.
17. Kaddour R., Sellami N., Chennaoui H., Nasri N., Baatour O., Mahmoudi H., Tarchoun I., Lachaâl M., Gruber M., Trifi N. Correlation between salt tolerance and genetic diversity between Sulla carnosa and Sulla coronaria. Afr. J. Biotechnol. 2011, 10:14355-14365.
18. Lai K., Lorenc M.T., Edwards D. Genomic databases for crop improvement. Agronomy 2012, 2:62-73.
19. Liu K., Muse S.V. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 2005, 21:2128-2129.
20. Mahalakshmi V., Aparna P., Ramadevi S., Ortiz R. Genomic sequence derived simple sequence repeats markers: a case study with Medicago spp. Electron J. Biotechnol. 2002, 5:30717-33458.
21. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 1978, 89:583-590.
22. Nei M. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. U. S. A. 1973, 70:3321-3323.
23. Raymond M., Rousset F. An exact test for population differentiation. Evolution 1995, 49:1280-1283.
24. Slatkin M., Barton N.H. A comparison of three indirect methods for estimating average levels of gene flow. Evolution 1989, 43:1349-1368.
25. Trifi-Farah N., Marrakchi M. Intra- and inter-specific genetic variability in Hedysarum revealed rDNA-RFLP markers. J. Genet. Breed. 2002, 56:1-9.
26. Trifi-Farah N., Baatout H., Boussaid M., Combes D., Figier J., Salhi-Hannachi A., Marrakchi M. Evaluation des ressources génétiques des espèces dugenre Hedysarum dans le bassin méditerranéen. Plant Genet. Resour. 2002, 130:1-6.
27. Weir B.S., Cockerham C. Estimating F-statistics for the analysis of population structure. Evolution 1984, 38:1358-1370.
28. Wright S. Evolution and the Genetics of Populations. The Theory of Gene Frequencies 1969, vol. II. University of Chicago Press, Chicago.