Using SSR markers to determine the population genetic structure of wild apricot (Prunus armeniaca L.) in the Ily Valley of West China

Genetic Resources and Crop Evolution

Volumn 54, Issue 3, 2007, Pages 563-572

  Tian Ming, He ^a   Xue Sen, Chen ^a   Zheng, Xu ^b   Jiang Sheng, Gao ^c   Pei Jun, Lin ^b   Wen, Liu ^a   Qing, Liang ^a   Yan, Wu ^a  

^a SHANDONG AGRICULTURAL UNIVERSITY   (China)

^b Research and Development Center of Wild Fruit Forest   (China)

^c the Production Engineering Laboratory of Characteristic Fruit Trees in Southern Xinjiang of Xinjiang Production and Construction Corps   (China)

Author keywords

DNA fingerprint; Genetic diversity; Germplasm; Molecular phylogeny; Prunus armeniaca; Wild apricot

Indexed keywords

DISPERSAL; DIVERSITY INDEX; GENE FLOW; GENETIC ANALYSIS; GENETIC STRUCTURE; GEOGRAPHICAL DISTRIBUTION; POLYMORPHISM; TREE; WILD POPULATION;

ASIA; CHINA; EURASIA; FAR EAST; ILY VALLEY; XINJIANG UYGUR;

HEXAPODA; PRUNUS; PRUNUS ARMENIACA;

EID: 34147107922     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-006-0013-5     Document Type: Article

References (37)

1. Barreneche T., Bodenes C., Lexer C., Trontin J.F., Fluch S., Streiff R., Plomion C., Roussel G., Steinkellner H., Burg K., Favre J.M., Glössl J. and Kremer A. 1998. A genetic linkage map of Quercus robur L. (pedunculate oak) based on RAPD, SCAR, microsatellite, isozyme and 5S rDNA markers. Theor. Appl. Genet. 97: 1090-1103.
2. Cipriani G., Lot G., Huang W.G., Marrazzo M.T., Peterlunger E. and Testolin R. 1999. AC/GT and AG/CT microsatellite repeats in peach [Prunus persica (L.) Batsch]: Isolation, characterization and cross-species amplification in Prunus. Theor. Appl. Genet. 99: 65-72.
3. Crawford D.J. 1990. Plant Molecular Systematics: Macromolecular Approaches. Wiley, New York, USA.
4. Crow J.F. and Aoki K. 1984. Group selection for a polygenic behavioral trait: estimating the degree of population subdivision. Proc. Natl. Acad. Sci. USA 81: 6073-6077.
5. Doyle J.J. and Doyle J.L. 1990. Isolation of plant DNA from fresh tissue. BRL Focus 12: 13-15.
6. Francis C.Y. and Yang R.C. 1993. Popgene version 1.31. http//www.ualberta.ca/∼fyeh/index.htm.
7. Ge S. 1994. Electrophoretic data and studies of plant systematics and evolution. J. Wuhan Bot. Res. 12: 71-84.
8. Gómez A., González-Martínez S.C., Collada C., Climent J. and Gil L. 2003. Complex population genetic structure in the endemic Canary Island pine revealed using chloroplast microsatellite markers. Theor. Appl. Genet. 107: 1123-1131.
9. Grant V. 1991. The Evolutionary Process: A Critical Study of Evolutionary Theory. Columbia University Press, New York, USA.
10. Hamrick J.L. 1987. Gene flow distribution of genetic variation in plant populations. In: Urbanska K. (ed.), Differentiation Patterns in Higher Plants. Academic Press, New York, USA, pp. 53-57.
11. Hamrick J.L. and Godt M.J.W. 1990. Allozyme diversity in plant species. In: Brown A.H.D., Clegg M.T., Kahler A.L. and Weir B.S. (eds), Plant Population Genetics, Breeding, and Genetic Resources. Sinauer Assoc, Sunderland, Mass., pp. 43-63.
12. Hormaza J.I. 2002a. Molecular characterization and similarity relationships among apricot (Prunus armeniaca L.) genotypes using simple sequence repeats. Theor. Appl. Genet. 104: 321-328.
13. Hormaza J.I. 2002b. Identification of apricot (Prunus armeniaca L.) genotypes using microsatellite and RAPD markers. Acta Hort. 546: 209-215.
14. Lamboy W.F. and Alpha C.G. 1998. The utility of simple sequence repeats (SSRs) for DNA fingerprinting germplasm accessions of grape (Vitis L.) species. J. Am. Hort. Sci. 123: 182-188.
15. Layne R.E.C., Bailey C.H. and Hough L.F. 1996. Apricot. In: Janick J. and Moore J.N. (eds), Fruit Breeding, Vol. 1. Tree and Tropical Fruits. John Wiley and Sons, New York, USA, pp. 79-111.
16. Li H.S. and Chen G.Z. 2004. Genetic diversity of Sonneratia alba in China detected by inter-simple sequence repeats (ISSR) analysis. Acta Bot. Sin. 46: 515-521.
17. Lin P.J. and Cui N.R. 2003. Wild Fruit Forests Resources in Tianshan Mountains: Comprehensive Research on Wild Fruit Forests in Ily, Xinjiang, China. China Forestry Publishing House, Beijing, China.
18. Mantel N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220.
19. Millar C.I. and Westfall R.D. 1992. Allozyme markers in forest genetic conservation. New Forests 6: 347-371.
20. Nei M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70: 3321-3323.
21. Nei M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590.
22. Powell W., Morgante M., Andre C., Hanafey M., Vogel J., Tingley S. and Rafalski A. 1996. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed. 2: 225-238.
23. Romero C., Pedryc A., Muñoz V., Llácer G. and Badenes M.L. 2003. Genetic diversity of different apricot geographical groups determined by SSR markers. Genome 46: 244-252.
24. Rostova N.S. and Sokolova E.A. 1992. Variability of anatomical and morphological leaf characters in apricot (Armeniaca Scop.) species and varieties. Bull. Appl. Bot. Gente. Plant Breed. 146: 74-86.
25. Sánchez-Pérez R., Ruiz D., Dicenta F., Egea J. and Martínez-Gómez P. 2004. Application of simple sequence repeat (SSR) markers in apricot breeding: molecular characterization, protection, and genetic relationships. Sci. Hort. 103: 131-444.
26. Schneider S., Roessli D. and Excoffier L. 2001. ARLEQUIN Version 2001: a software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Swizerland, http://lgb.unige.ch/arlequin/ index.
27. Shannon C.E. and Weaver W. 1949. The Mathematical Theory of Communication. University of Illinois Press, Urbana.
28. Slatkin M. and Barton N.H. 1989. A comparison of three indirect methods for estimating average levels of gene flow. Evolution 43: 1349-1368.
29. Sosinski B., Gannavarapu M., Hager L.D., Beck L.E., King G. J., Ryder C.D., Rajapakse S., Baird W.V., Ballard R.E. and Abbott A.G. 2000. Characterization of microsatellite markers in peach [Prunus persica (L.) Batsch]. Theor. Appl. Genet. 101: 421-428.
30. Spiegel S., Kovalenko E.M., Varga A. and James D. 2004. Detection and partial molecular characterization of two plum pox virus isolates from plum and wild apricot in southeast Kazakhstan. Plant Dis. 88: 973-979.
31. Testolin R., Marrazzo T., Cipriani G., Quarta R., Verde I., Dettori M.T., Pancaldi M. and Sansavini S. 2000. Microsatellite DNA in peach [Prunus persica (L.) Batsch] and its use in fingerprinting and testing the genetic origin of cultivars. Genome 43: 512-520.
32. Vavilov N.I. 1951. Phytogeographical basis of plant breeding. In: Chester K.S. (trans) The origin, variation, immunity and breeding of cultivated plants. Chron. Bot. 13: 13-54.
33. Vendramin G.G., Anzidei M., Madaghiele A. and Bucci G. 1998. Distribution of genetic diversity in Pinus pinaster Ait. as revealed by chloroplast microsatellite. Theor. Appl. Genet. 97: 456-463.
34. Wang Y.H., Luo J.X., Xue X.M., Helena K. and Li C.Y. 2005. Diversity of microsatellite markers in the populations of Picea asperata originating from the Mountains of China. Plant Science 168: 707-714.
35. Wright S. 1978. Evolution and the Genetics of Populations, Vol. 4. Variability within and Among Natural Populations. University of Chicago Press, Chicago, USA.
36. Xu L.A., Li X.J., Pan H.X., Zou H.Y., Yin D.M. and Huang M.R. 2001. Study of population genetic structure in Castanopsis fargesii with microsatelite markers. Acta Bot. Sin. 43: 409-412.
37. Zhebentyayeva T.N., Reighard G.L., Gorina V.M. and Abbott A.G. 2003. Simple sequence repeat (SSR) analysis for assessment of genetic variability in apricot germplasm. Theor. Appl. Genet. 106: 435-444.