Phylogenetic relationships of Mediterranean Hedysarea species assessed by AFLP markers

Plant Systematics and Evolution

Volumn 298, Issue 1, 2012, Pages 51-58

  Chennaoui Kourda, Houda ^a   Marghali, Sonia ^a   Zitouna, Nadia ^a   Trifi Farah, Neila ^a  

^a FACULTÉ DES SCIENCES DE TUNIS   (Tunisia)

Author keywords

AFLP; Genetic diversity; Hedysarum; Phylogeny; Sulla

Indexed keywords

HEDYSARUM; HEDYSARUM ACULEOLATUM; HEDYSARUM MEMBRANACEUM;

EID: 84855335020     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-011-0522-3     Document Type: Article

References (43)

1. Annicchiarico P, Abdelguerfi A, Ben Younes M, Bouzerzour H, Carroni AM, Pecetti L, Tibaoui G (2008) Adaptation of sulla cultivars to contrasting Mediterranean environments. Aust J Agric Res 59: 702-706.
2. Arab H, Haddi ML, Mehennaoui S (2009) Evaluation de la valeur nutritive par la composition chimique des principaux fourrages des zones aride et semi-aride en algerie. Sciences et technologie 30: 50-58.
3. Baatout H, Marrakchi M, Mathieu C, Vedel F (1985) Variation of plastid and mitochondrial DNAs in the genus Hedysarum. Theor Appl Genet 70: 577-584.
4. Baatout H, Marrakchi M, Pernes j (1990) Electrophoretic studies of genetic variation in natural populations of allogamous Hedysarum capitatum and autogamous Hedysarum euspinosissimum. Plant Sci 69: 49-64.
5. Bassam BJ, Caetano-Anolles G, Gresshoff PM (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Ann Biochem 196: 80-83.
6. Borreani G, Roggero PP, Sulas L, Valente ME (2003) Quantifying morphological stage to predict the nutritive value in sulla (Hedysarum coronarium L.). Agronomy J 95: 1608-1617.
7. Boussaïd M, Ben Fadhel N, Trifi-Farah N, Abdelkefi A, Marrakchi M (1995) Les espèces Méditerranéennes du genre Hedysarum. In: Ressources génétiques des plantes fourragères et à gazon, BRG/INRA, France, pp 115-130.
8. Chalhoub BA, Thibault S, Laucou V, Rameau C, Hofte H, Cousin R (1997) Silver staining and recovery of AFLP amplification products on large denaturing polyacrylamide gels. Biotechniques 22(2): 216-220.
9. Chennaoui H, Marghali S, Marrakchi M, Trifi-Farah N (2007) Phylogenetic relationships in Mediterranean Hedysarum genus as inferred from ITS sequences of nuclear ribosomal DNA. Genet Resour Crop Evol 54: 389-397.
10. Chennaoui-Kourda H, Marghali S, Marrakchi M, Trifi-Farah N (2007) Genetic diversity of Sulla genus (Hedysarea) and related species using Inter-simple sequence repeat (ISSR) markers. Biochem Syst Ecol 35: 682-688.
11. Choi BH, Ohashi H (2003) Generic criteria and infrageneric system for Hedysarum and related genera (Papilionoideae-Leguminosae). Taxon 52: 567-576.
12. Claudia P, Jaimes F, Aristizábal A, Mauricio Bernal G, Zulma M, Suarez R, Dolly M (2006) AFLP fingerprinting of Colombian Clostridium spp. strains, multivariate data analysis and its taxonomical implications. J Microbiol Meth 67(1): 64-69.
13. Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA mini-preparation: Version II. Plant Mol Biol Rep 1: 19-21.
14. Fávero AP, Simpson CE, Valls JFM, Vallsa JFM, Vello NA (2006) Study of the evolution of cultivated peanut through crossability studies among Arachisipaënsis, A duranensis, and A hypogaea. Crop Sci 46: 1546-1552.
15. Ford BA, Naczi RFC, Ghazvini H, Iranpour M (2006) Amplified frangment length polymorphism analysis reveals three distinct taxa in Carex digitalis sect. Careyanne (Cyperaceae). Can J Bot 84(9): 1444-1452.
16. Frijters MA, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414.
17. Gilbert JE, Lewis RV, Wilkinson MJ, Caligari PDS (1999) Developing an appropriate strategy to assess genetic variability in plant germplasm collections. Theor Appl Genet 98: 1125-1131.
18. Jenczewski E, Prosperi JM, Ronfort J (1999) Evidence for gene flow between wild and cultivated Medicago sativa (Leguminosae) based on allozyme markers and quantitative traits. Am J Bot 86: 677-687.
19. Keiper FJ, McConchie R (2000) An analysis of genetic variation in natural populations of Sticherus flabellatus [R Br (St John)] using amplified fragment length polymorphism (AFLP) markers. Mol Ecol 9: 571-581.
20. Koopman WJM, Wissemann V, De Cock K, Huylenbroeck JV, De Riek J, Sabatino GJH, Visser D, Vosman B, Ritz CM, Maes B, Werlemark G, Nybom H, Debener T, Linde M, Smulders MJM (2008) AFLP markers as a tool to reconstruct complex relationships: a case study in Rosa (Rosaceae). Am J Bot 95: 353-366.
21. Lanteri S, Acquadro A, Quagliotti L, Portis E (2003) RAPD and AFLP assessment of genetic variation in a landrace of pepper (Capsicum annuum L), grown in North-West Italy. Gen Res Crop Evol 50: 723-735.
22. Lanteri S, Saba E, Cadinu M, Mallica GM, Baghino L, portis E (2004) Amplified fragment length polymorphism for genetic diversity assessment in globe artichoke. Theor Appl Genet 108: 1534-1544.
23. Lu J, Knox MR, Ambrose M, Brown JKM, Ellis THN (1996) Comparative analysis of genetic diversity in pea assessed by RFLP and PCR methods. Theor Appl Genet 93: 1103-1111.
24. Mantel NA (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220.
25. Morgante M, Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3: 175-182.
26. Mulunch T, Heiko CB, Maass BL (2007) Genetic diversity in Yam germplasm from Ethiopia and their relatedness to the main cultivated Discorea species assessed by AFLP markers. Crop Sci 47: 1744-1753.
27. Nei M, Li WH (1979) Mathematical model for studying genetical variation in terms of restriction endonucleases. Proc Natl Acad Sci 74: 5267-5273.
28. Portis E, Barchi L, Acquadro A, Macua JI, Lanteri S (2005) Genetic diversity assessment in cultivated cardoon by AFLP (amplified fragment length polymorphism) and microsatellite markers. Plant Breed 124: 299-304.
29. Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, Rafalski A (1996) The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed 2: 225-238.
30. Prevost A, Wilkinson MJ (1999) A new system of comparing PCR primers applied to SSR fingerprinting of potato cultivars. Theor Appl Genet 98: 107-112.
31. Rohlf FJ (2000) NTSYS-pc numerical taxonomy and multivariate analysis system version 2. 1 Manual. Applied Biostatistics Inc, New York.
32. Roldan-Ruiz I, Dendauw J, van Bockstaele E, Depicker A, De Loose M (2000) AFLP markers reveal high polymorphic rates in ryegrasses (Lolium ssp). Mol Breed 6: 125-134.
33. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Plainview, NY.
34. Sarno R, Stringi L (1982) Sulla (Hedysarum coronarium L.). In: Baldoni R, Giardini L (eds) Coltivazioni Erbacee, vol 18. Bologna, Pàtron Editore, pp 897-907.
35. SAS (1990) SAS user's guide: SAS STAT, SAS BASIC. Version 6 fourth edition. SAS incl BOX 8000. cary, N. C. 27512-8000.
36. Shah AH, Dilnawaz SA, Khaliq I, Batool F, Hassan L, Pearce SR (2009) Evaluation of phylogenetic relationship among Sea Buckthorn (Hippophae rhamnoides L spp. turkestanica) wild ecotypes from Pakistan using Amplified Fragment Length Polymorphism (AFLP). Pak J Bot 41(5): 2419-2426.
37. Trifi-Farah N, Marrakchi M (2001) Hedysarum phylogeny mediated by RFLP analysis of nuclear ribosomal DNA. Genet Res Crop Evol 48: 339-345.
38. Trifi-Farah N, Chatti WS, Marrakchi M (1989) Analyse de la variabilité morphologique et enzymatique des formes cultivées et spontanées de Hedysarum coronarium L en Tunisie. Agronomie 9: 59-698.
39. Trifi-Farah N, Baatout H, Boussaid M, Combes D, Figier J, Hannachi-Salhi A, Marrakchi M (2002) Evaluation des ressources génétiques des espèces du genre Hedysarum dans le bassin méditerranéen. Plant Genet Resour Newsl 130: 1-6.
40. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kupier M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414.
41. Wang Z, Gao HW, Wu YQ, Han JG (2007) Genetic diversity and population structure of caragana korshinskii revealed by AFLP. Crop Sci 47: 1737-1743.
42. Yap IV, Nelson RJ (1996) Winboot: a program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrograms IRRI Discussion Paper Se-ries No 14 International Rice Research Institute, PO Box 933, Manila, Philippines. Yuan 95.
43. Zuriaga L, Blanca J, Nuez F (2009) Classification and phylogenetic relationships in Solanum section Lycopersicon based on AFLP and two nuclear gene sequences. Genet Resour Crop Evol 56(5): 663-678.