Phylogenetic relationships in the North African genus Hedysarum as inferred from ITS sequences of nuclear ribosomal DNA

Genetic Resources and Crop Evolution

Volumn 54, Issue 2, 2007, Pages 389-397

  Chennaoui, H ^a   Marghali, S ^a   Marrakchi, M ^a   Trifi Farah, N ^a  

^a FACULTÉ DES SCIENCES DE TUNIS   (Tunisia)

Author keywords

Hedysarum; ITS; North Africa; Nuclear ribosomal DNA; Phylogeny

Indexed keywords

DNA FINGERPRINTING; LEGUME; PHYLOGENETICS; POLYMORPHISM;

AFRICA; NORTH AFRICA;

FABACEAE; HEDYSARUM; HEDYSARUM CARNOSUM; HEDYSARUM CORONARIUM; HEDYSARUM SPINOSISSIMUM;

EID: 33847389421     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-006-0001-9     Document Type: Article

References (27)

1. Anamthawat-Jonson K., Bragason B.T., Bödvarsdottir S.K. and Koebner R.M.D. 1999. Molecular variation in Leymus species and populations. Mol. Ecol. 8: 309-315.
2. Arnheim N. 1983. Concerted evolution of multigene families. In: Nei M. and Koehn R.K. (eds), Evolution of Genes and Proteins. Sinauer Associates Inc., Sunderland, Mass. pp. 38-61.
3. Baatout H., Marrakchi M., Mathieu C. and Vedel F. 1985. Variation of plastid and mitochondrial DNAs in the genus Hedysarum. Theor. Appl. Genet. 70: 577-584.
4. Baatout H., Marrakchi M. and Pernes J. 1990. Electrophoretic studies of genetic variation in natural populations of allogamous Hedysarum capitatum and autogamous Hedysarum euspinosissimum. Plant Sci. 69: 49-64.
5. Baldwin B.G. 1992. Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the Compositae. Mol. Phyl. Evol. 1(1): 3-16.
6. Baldwin B.G. 1993. Molecular phylogenetics of Calycadenia (Compositae) based on ITS sequences of nuclear ribosomal DNA: chromosomal and morphological evolution re-examined. Am. J. Bot. 80(2): 222-238.
7. Baldwin B.G., Sanderson M.J., Porter J.M., Wojciechowski M.E., Campbeli C.S. and Donoghue M.J. 1995. The ITS region of nuclear ribosomal DNA: a valuable source evidence of angiosperm phylogeny. Ann. Missouri Bot. Gard. 82: 247-277.
8. Boussaïd M., Ben Fadhel N., Trifi-Farah N., Abdelkefi A. and Marrakchi M. 1995. Les espèces Méditerranéennes du genre Hedysarum. In: Ressources génétiques des plantes fourragères et à gazon. BRG/INRA, France, pp. 115-130.
9. Cerbah M., Souza-Chies T., Jubier M.F., Lejeune B. and Siljak- Yakovlev S. 1998. Molecular phylogeny of the genus Hypochaeris using internal transcribed spacers of nuclear rDNA: inference for chromosomal evolution. Mol. Biol. Evol. 15(3): 345-354.
10. Choi B.H. and Ohashi H. 2003. Generic criteria and an infrageneric system for Hedysarum and related genera (Papilionoideae- Leguminosae). Taxon 52: 567-576.
11. Dellaporta S.L., Wood J. and Hiks J.B. 1983. A plant DNA minipreparation: version II. Plant Mol. Biol. Rep. 1: 19-21.
12. Gonzalez I.L., Chambers C., Gorski J.L., Stambolian D., Schmickel R.D. and Sylvester J.L. 1990. Sequence and structure correlation of human ribosomal transcribed spacers. J. Mol. Biol. 212: 27-35.
13. Kabbaj A., Zeboudj F., Peltier D., Tabmount A., Tersac M., Dulieu H. and Berville A. 1995. Variation and phylogeny of the ribosomal DNA unit types and 5S DNA in Petunia jussieu. Genet. Resour. Crop Evol. 42: 311-325.
14. Katz-Downie D.S., Valiejo-Roman C.M., Terentieva E.I., Troitsky A.V., Pimenov M.G., Lee B. and Downie S.R. 1999. Towards a molecular phylogeny of Apiaceae subfamily Apioideae: additional information from nuclear ribosomal DNA ITS sequences. Plant Syst. Evol. 216: 167-195.
15. Kimura M. 1980. A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
16. Marghali S., Panaud O., Lamy F., Ghariani S., Sarr A., Marrakchi M. and Trifi-Farah N. 2005. Exploration of intra- and inter-population genetic diversity in Hedysarum coronarium L. revealed by AFLP markers. Genet. Resour. Crop Evol. 52: 277-284.
17. Saïki R.K., Scharf S.J., Faloona F., Mullis K.A., Horn G.T., Ehrlich H.A. and Aenheim N. 1985. Enzymatic amplification of globilin genomic sequences and restriction site analyses for diagnosis of sickle cell anemia. Science 230: 1350-1356.
18. Sambrook J., Fritsch E.F. and Maniatis T. 1989. Molecular Cloning. Laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Plainview, NY.
19. Santoni S. and Berville A. 1992. Characterisation of the nuclear ribosomal DNA units and phylogeny of Beta L. wild forms and cultivated beets. Theor. Appl. Genet. 83: 533-542.
20. Sneath P.H.A. and Sokal R.R. 1973. Numerical Taxonomy. Freeman, San Francisco, USA.
21. Trifi-Farah N. and Marrakchi M. 2001. Hedysarum phylogeny mediated by RFLP analysis of nuclear ribosomal DNA. Genet. Resour. Crop Evol. 48: 339-345.
22. Trifi-Farah N. and Marrakchi M. 2002. Intra- and interspecific genetic variability in Hedysarum revealed rDNA-RFLP markers. J. Genet. Breed. 56: 127-135.
23. Trifi-Farah N., Chatti W.S., Marrakchi M. and Pernes J. 1989. Analyse de la variabilité morphologique et enzymatique des formes cultivées et spontanées de Hedysarum coronarium L. en Tunisie. Agronomie 9: 591-598.
24. Trifi-Farah N., Batout H., Boussaid M., Combes D., Figier J., Hannachi-Salhi A. and Marrakchi M. 2002. Evaluation des ressources génétiques des espèces du genre Hedysarum dans le bassin méditerranéen. Plant Genet. Res. Newslett. 130: 1-6.
25. Unfried I. and Gruendler P. 1990. Nucleotide sequence of the 5.8S and 25S rRNA intergenic genes and of the internal transcribed spacers from Arabidopsis thaliana. Nucleic Acids Res. 18: 4011.
26. Venkateswarlu K. and Nazar R. 1991. A conserved core structure in the 18-26S rRNA intergenic region from tobacco, Nicotiana rustica. Plant Mol. Biol. 17: 189-194.
27. White T.J., Burns T., Lee S. and Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Shinsky J.J. and White T.J. (eds), PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, pp. 315-322.